RchiOBHm_Chr2g0154561

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
71692728 .. 71693209
482 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52354

Sequence Viewer

Length: 258 bp
ATGGGGGACGGCGATGTCGTGCTTAGGCGAGTTCATACCGACTTCGGCGACTACGAGGAAGATGTGATTGCGGAGATCCTAGCAAGGCTTCCGGTCAAATCCTTGATGCGATTCCGGTGCGTCTGCAAGTCATGGCGTGCTTTGATCTCTGATTCGTATTTTGTAAAGAAACACCTCAGCTACGGAGAGAAAGGCATCACCGAGAGCGCTCACAGGCTCATTTTTCATGCTGGATCCTCCCTTGGCCTTGGACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

85

Amino Acids

9.57

Weight (kDa)

7.84

Isoelectric Point (pI)

33.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 20 - 56 1.4e-11 F-box domain
F-box-like PF12937 21 - 54 2.6e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 14
AciI CCGC 1 cut(s) 71
AclWI GGATC 3 cut(s) 70, 228, 241
AfeI AGCGCT 1 cut(s) 208
AluBI AGCT 1 cut(s) 180
AluI AGCT 1 cut(s) 180
AlwI GGATC 3 cut(s) 70, 228, 241
Aor51HI AGCGCT 1 cut(s) 208
AoxI GGCC 1 cut(s) 244
AspLEI GCGC 1 cut(s) 209
AsuHPI GGTGA 1 cut(s) 190
BamHI GGATCC 1 cut(s) 233
BbvCI CCTCAGC 1 cut(s) 176
BceAI ACGGC 1 cut(s) 25
BcgI CGANNNNNNTGC 2 cut(s) 99, 133
BfaI CTAG 1 cut(s) 80
BfoI RGCGCY 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 235
BmsI GCATC 2 cut(s) 96, 204
Bpu10I CCTNAGC 2 cut(s) 23, 176
BsaJI CCNNGG 2 cut(s) 241, 247
BsaWI WCCGGW 2 cut(s) 91, 114
BseDI CCNNGG 2 cut(s) 241, 247
BseMII CTCAG 1 cut(s) 190
BshFI GGCC 1 cut(s) 246
BsiSI CCGG 2 cut(s) 92, 115
BslFI GGGAC 1 cut(s) 20
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 1 cut(s) 246
Bsp143I GATC 3 cut(s) 75, 144, 233
BspACI CCGC 1 cut(s) 71
BspANI GGCC 1 cut(s) 246
BspCNI CTCAG 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 235
BspPI GGATC 3 cut(s) 70, 228, 241
BssECI CCNNGG 2 cut(s) 241, 247
BssMI GATC 3 cut(s) 75, 144, 233
BssT1I CCWWGG 2 cut(s) 241, 247
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 2 cut(s) 23, 176
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 1 cut(s) 209
BstKTI GATC 3 cut(s) 78, 147, 236
BstMBI GATC 3 cut(s) 75, 144, 233
BstX2I RGATCY 2 cut(s) 75, 233
BstYI RGATCY 2 cut(s) 75, 233
BsuRI GGCC 1 cut(s) 246
BtgZI GCGATG 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 138
CfoI GCGC 1 cut(s) 209
CseI GACGC 1 cut(s) 109
CviAII CATG 2 cut(s) 132, 227
CviJI RGCY 4 cut(s) 88, 180, 217, 246
CviKI_1 RGCY 4 cut(s) 88, 180, 217, 246
DdeI CTNAG 2 cut(s) 23, 176
DpnI GATC 3 cut(s) 77, 146, 235
DpnII GATC 3 cut(s) 75, 144, 233
DrdI GACNNNNNNGTC 1 cut(s) 14
DseDI GACNNNNNNGTC 1 cut(s) 14
Eco130I CCWWGG 2 cut(s) 241, 247
Eco47III AGCGCT 1 cut(s) 208
EcoT14I CCWWGG 2 cut(s) 241, 247
ErhI CCWWGG 2 cut(s) 241, 247
FaeI CATG 2 cut(s) 135, 230
FaiI YATR 4 cut(s) 36, 133, 228, 256
FaqI GGGAC 1 cut(s) 20
FatI CATG 2 cut(s) 131, 226
FspBI CTAG 1 cut(s) 80
GlaI GCGC 1 cut(s) 208
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 1 cut(s) 246
HapII CCGG 2 cut(s) 92, 115
HgaI GACGC 1 cut(s) 109
HhaI GCGC 1 cut(s) 209
Hin1II CATG 2 cut(s) 135, 230
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HinfI GANTC 2 cut(s) 111, 152
HpaII CCGG 2 cut(s) 92, 115
HphI GGTGA 1 cut(s) 190
Hpy188I TCNGA 1 cut(s) 151
HpyCH4V TGCA 1 cut(s) 126
HpyF3I CTNAG 2 cut(s) 23, 176
Hsp92II CATG 2 cut(s) 135, 230
HspAI GCGC 1 cut(s) 207
Kzo9I GATC 3 cut(s) 75, 144, 233
LpnPI CCDG 4 cut(s) 105, 128, 199, 216
LweI GCATC 2 cut(s) 96, 204
MaeI CTAG 1 cut(s) 80
MalI GATC 3 cut(s) 77, 146, 235
MboI GATC 3 cut(s) 75, 144, 233
MboII GAAGA 1 cut(s) 71
MflI RGATCY 2 cut(s) 75, 233
MnlI CCTC 3 cut(s) 49, 185, 247
MspI CCGG 2 cut(s) 92, 115
NdeII GATC 3 cut(s) 75, 144, 233
NlaIII CATG 2 cut(s) 135, 230
NlaIV GGNNCC 1 cut(s) 235
PcsI WCGNNNNNNNCGW 2 cut(s) 15, 51
PfeI GAWTC 2 cut(s) 111, 152
PspN4I GGNNCC 1 cut(s) 235
PsuI RGATCY 2 cut(s) 75, 233
Sau3AI GATC 3 cut(s) 75, 144, 233
SetI ASST 2 cut(s) 177, 182
SfaNI GCATC 2 cut(s) 96, 204
SsiI CCGC 1 cut(s) 71
SspMI CTAG 1 cut(s) 80
StyI CCWWGG 2 cut(s) 241, 247
TfiI GAWTC 2 cut(s) 111, 152
TspDTI ATGAA 2 cut(s) 23, 215
TspGWI ACGGA 1 cut(s) 198
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.