Prupe.1G567200_v2.0.a1

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000113
Physical Location & Seq
Forward (+)
46286985 .. 46287965
981 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G567200.1

Sequence Viewer

Length: 981 bp
ATGACTCACCTCAACAACACAGTCACAGGCATCAACATGAACATGGACATGAATCTCTTGGTCTCACATAATGACTCTCTTCTTTCGATGTACTGCGAAGGATCCAAGGATGGAGATGGTAGTCATCTCGCAATCAAGAAGGTTGATCATCCTGCAGTAATGGACCCAGATGTGTGTTTGTGTATTTTGGGCTCTTGCAATGACTTGGTATGTCTAGAAATCGGCGACGACAACTCCATTATTATATTATGGAACCCTTGTACTAGAGATACCAAGGTGTTAGCACAACCTCCATATCATTTCCAAGACAAGATGTTTCACGGATTCGGTTATGATTCTTTAACTGAAGATTACAAGATAATGTTGGCCACCGAGGGGCCTTCTGAAGTTATGATGAATGTCTTTTCACTTAAAAGGAATTCATGGAGGACTTATGAATACCTTGCTGATTTGAGAACGACTGATCAGCAGGGGTGCTTCTTAAACGGAGCTCTTCACTGGATAACGTCTGGAACTATCACCTCTCTGGATTTAGCAGATGAGGAATTTAAGGAGATTGTGCCATTACCCTATTGTGGCAACACGGATTATAGCTTCGAGGGAGTTACGAGTGCTCGAAATTGTCTTTATCTGTATAATGACCCGACTGAAGACACAGATTTTTGCATATGGATTATGAAGGAATATGGTGTCAAGGAATCTTGGACTAGAGTCATAAAAATTTCATCAGAGATTTTGGCTCAACAGGTTTTCGTGGAAGTGGATAAACTTGAGCTGAAGGTTGTCTGCATTTTAGAGAATGGTGAAGTTTTGATGGATCATGAAGGAAAGGTCTTGGTATCATATAATCCCAAGACTAGGACATTTAGGAATATTATTAATGGTAAAGAAGATGATGAATTCCAAGCAACTACTTACCTAGAGACTTTAGTTTCGCCAGTAACAGCAGCAGAGGGTGGTGGTGGTGCAAACCATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like FBA_1

Protein Analysis

327

Amino Acids

36.67

Weight (kDa)

4.56

Isoelectric Point (pI)

28.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 96, 109, 825
AcoI YGGCCR 1 cut(s) 366
AcsI RAATTY 4 cut(s) 418, 545, 720, 899
AcuI CTGAAG 4 cut(s) 366, 405, 669, 797
AfaI GTAC 2 cut(s) 92, 262
AfiI CCNNNNNNNGG 3 cut(s) 375, 575, 858
AluBI AGCT 3 cut(s) 491, 594, 775
AluI AGCT 3 cut(s) 491, 594, 775
Alw21I GWGCWC 2 cut(s) 493, 616
Alw26I GTCTC 2 cut(s) 67, 917
AlwI GGATC 3 cut(s) 96, 109, 825
AoxI GGCC 2 cut(s) 366, 377
ApeKI GCWGC 1 cut(s) 947
ApoI RAATTY 4 cut(s) 418, 545, 720, 899
ArsI GACNNNNNNTTYG 2 cut(s) 916, 948
AseI ATTAAT 1 cut(s) 879
AspS9I GGNCC 2 cut(s) 163, 377
AsuHPI GGTGA 2 cut(s) 511, 815
AvaII GGWCC 1 cut(s) 163
BaeI ACNNNNGTAYC 2 cut(s) 261, 294
BalI TGGCCA 1 cut(s) 368
BamHI GGATCC 1 cut(s) 101
BanII GRGCYC 2 cut(s) 194, 493
BbsI GAAGAC 1 cut(s) 657
Bbv12I GWGCWC 2 cut(s) 493, 616
BbvI GCAGC 1 cut(s) 959
BccI CCATC 3 cut(s) 104, 110, 808
BclI TGATCA 2 cut(s) 145, 463
BcoDI GTCTC 2 cut(s) 67, 917
BfaI CTAG 5 cut(s) 215, 264, 708, 858, 920
BfmI CTRYAG 1 cut(s) 153
BisI GCNGC 1 cut(s) 948
BlsI GCNGC 1 cut(s) 949
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 163, 377
BmiI GGNNCC 4 cut(s) 103, 165, 254, 378
BmsI GCATC 1 cut(s) 39
BoxI GACNNNNGTC 1 cut(s) 710
BpiI GAAGAC 1 cut(s) 657
BpuEI CTTGAG 1 cut(s) 791
BsaI GGTCTC 1 cut(s) 67
BsaJI CCNNGG 3 cut(s) 105, 273, 372
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 3 cut(s) 375, 575, 858
Bse1I ACTGG 2 cut(s) 503, 938
Bse3DI GCAATG 1 cut(s) 205
BseDI CCNNGG 3 cut(s) 105, 273, 372
BseGI GGATG 2 cut(s) 115, 148
BseLI CCNNNNNNNGG 3 cut(s) 375, 575, 858
BseMI GCAATG 1 cut(s) 205
BseNI ACTGG 2 cut(s) 503, 938
BseXI GCAGC 1 cut(s) 959
BshFI GGCC 2 cut(s) 368, 379
BsiHKAI GWGCWC 2 cut(s) 493, 616
BslI CCNNNNNNNGG 3 cut(s) 375, 575, 858
BsmAI GTCTC 2 cut(s) 67, 917
BsnI GGCC 2 cut(s) 368, 379
Bso31I GGTCTC 1 cut(s) 67
Bsp1286I GDGCHC 3 cut(s) 194, 493, 616
Bsp143I GATC 4 cut(s) 101, 145, 463, 817
BspANI GGCC 2 cut(s) 368, 379
BspHI TCATGA 1 cut(s) 820
BspLI GGNNCC 4 cut(s) 103, 165, 254, 378
BspMAI CTGCAG 1 cut(s) 157
BspPI GGATC 3 cut(s) 96, 109, 825
BspQI GCTCTTC 1 cut(s) 498
BspTNI GGTCTC 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 205
BsrI ACTGG 2 cut(s) 503, 938
BssECI CCNNGG 3 cut(s) 105, 273, 372
BssMI GATC 4 cut(s) 101, 145, 463, 817
BssT1I CCWWGG 2 cut(s) 105, 273
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 2 cut(s) 84, 498
BstF5I GGATG 2 cut(s) 115, 148
BstKTI GATC 4 cut(s) 104, 148, 466, 820
BstMAI GTCTC 2 cut(s) 67, 917
BstMBI GATC 4 cut(s) 101, 145, 463, 817
BstPAI GACNNNNGTC 1 cut(s) 710
BstSFI CTRYAG 1 cut(s) 153
BstV1I GCAGC 1 cut(s) 959
BstV2I GAAGAC 1 cut(s) 657
BstX2I RGATCY 1 cut(s) 101
BstYI RGATCY 1 cut(s) 101
BsuRI GGCC 2 cut(s) 368, 379
BtsCI GGATG 2 cut(s) 115, 148
BtsIMutI CAGTG 1 cut(s) 496
CciI TCATGA 1 cut(s) 820
Cfr13I GGNCC 2 cut(s) 163, 377
Csp6I GTAC 2 cut(s) 91, 261
CviAII CATG 5 cut(s) 37, 43, 49, 423, 821
CviJI RGCY 7 cut(s) 192, 368, 379, 491, 594, 740, 775
CviKI_1 RGCY 7 cut(s) 192, 368, 379, 491, 594, 740, 775
CviQI GTAC 2 cut(s) 91, 261
DpnI GATC 4 cut(s) 103, 147, 465, 819
DpnII GATC 4 cut(s) 101, 145, 463, 817
EaeI YGGCCR 1 cut(s) 366
Eam1104I CTCTTC 2 cut(s) 84, 498
EarI CTCTTC 2 cut(s) 84, 498
Ecl136II GAGCTC 1 cut(s) 491
Eco130I CCWWGG 2 cut(s) 105, 273
Eco24I GRGCYC 2 cut(s) 194, 493
Eco31I GGTCTC 1 cut(s) 67
Eco47I GGWCC 1 cut(s) 163
Eco53kI GAGCTC 1 cut(s) 491
Eco57I CTGAAG 4 cut(s) 366, 405, 669, 797
EcoICRI GAGCTC 1 cut(s) 491
EcoO109I RGGNCCY 1 cut(s) 377
EcoRI GAATTC 2 cut(s) 418, 899
EcoT14I CCWWGG 2 cut(s) 105, 273
EcoT38I GRGCYC 2 cut(s) 194, 493
ErhI CCWWGG 2 cut(s) 105, 273
FaeI CATG 5 cut(s) 40, 46, 52, 426, 824
FatI CATG 5 cut(s) 36, 42, 48, 422, 820
FauNDI CATATG 2 cut(s) 668, 975
FbaI TGATCA 2 cut(s) 145, 463
Fnu4HI GCNGC 1 cut(s) 948
FokI GGATG 2 cut(s) 122, 135
FriOI GRGCYC 2 cut(s) 194, 493
Fsp4HI GCNGC 1 cut(s) 948
FspBI CTAG 5 cut(s) 215, 264, 708, 858, 920
GluI GCNGC 1 cut(s) 948
HaeIII GGCC 2 cut(s) 368, 379
Hin1II CATG 5 cut(s) 40, 46, 52, 426, 824
HinfI GANTC 7 cut(s) 4, 52, 74, 324, 335, 698, 711
HphI GGTGA 2 cut(s) 511, 815
Hpy188I TCNGA 2 cut(s) 385, 730
Hpy188III TCNNGA 5 cut(s) 136, 215, 510, 527, 821
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 6 cut(s) 92, 133, 390, 673, 772, 818
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 1 cut(s) 506
HpyCH4V TGCA 5 cut(s) 155, 198, 666, 789, 968
HpySE526I ACGT 1 cut(s) 506
Hsp92II CATG 5 cut(s) 40, 46, 52, 426, 824
Ksp22I TGATCA 2 cut(s) 145, 463
Kzo9I GATC 4 cut(s) 101, 145, 463, 817
LguI GCTCTTC 1 cut(s) 498
LmnI GCTCC 1 cut(s) 488
LpnPI CCDG 9 cut(s) 12, 165, 180, 455, 484, 495, 512, 731, 951
Lsp1109I GCAGC 1 cut(s) 959
LweI GCATC 1 cut(s) 39
MaeI CTAG 5 cut(s) 215, 264, 708, 858, 920
MaeII ACGT 1 cut(s) 506
MaeIII GTNAC 3 cut(s) 22, 604, 940
MalI GATC 4 cut(s) 103, 147, 465, 819
MboI GATC 4 cut(s) 101, 145, 463, 817
MboII GAAGA 5 cut(s) 71, 359, 485, 662, 902
MflI RGATCY 1 cut(s) 101
MhlI GDGCHC 3 cut(s) 194, 493, 616
MlsI TGGCCA 1 cut(s) 368
MluCI AATT 5 cut(s) 418, 545, 619, 720, 899
MluNI TGGCCA 1 cut(s) 368
MlyI GAGTC 2 cut(s) 68, 720
MnlI CCTC 8 cut(s) 20, 300, 367, 420, 532, 535, 592, 946
Mox20I TGGCCA 1 cut(s) 368
MscI TGGCCA 1 cut(s) 368
MseI TTAA 5 cut(s) 341, 411, 482, 549, 879
MslI CAYNNNNRTG 3 cut(s) 35, 41, 47
Msp20I TGGCCA 1 cut(s) 368
NdeI CATATG 2 cut(s) 668, 975
NdeII GATC 4 cut(s) 101, 145, 463, 817
NlaIII CATG 5 cut(s) 40, 46, 52, 426, 824
NlaIV GGNNCC 4 cut(s) 103, 165, 254, 378
NmuCI GTSAC 1 cut(s) 22
PagI TCATGA 1 cut(s) 820
PciSI GCTCTTC 1 cut(s) 498
PfeI GAWTC 4 cut(s) 52, 324, 335, 698
PkrI GCNGC 1 cut(s) 949
PleI GAGTC 2 cut(s) 68, 719
PpsI GAGTC 2 cut(s) 68, 719
PshAI GACNNNNGTC 1 cut(s) 710
PshBI ATTAAT 1 cut(s) 879
Psp124BI GAGCTC 1 cut(s) 493
PspN4I GGNNCC 4 cut(s) 103, 165, 254, 378
PspPI GGNCC 2 cut(s) 163, 377
PstI CTGCAG 1 cut(s) 157
PsuI RGATCY 1 cut(s) 101
RsaI GTAC 2 cut(s) 92, 262
RsaNI GTAC 2 cut(s) 91, 261
RseI CAYNNNNRTG 3 cut(s) 35, 41, 47
SacI GAGCTC 1 cut(s) 493
SapI GCTCTTC 1 cut(s) 498
SaqAI TTAA 5 cut(s) 341, 411, 482, 549, 879
SatI GCNGC 1 cut(s) 948
Sau3AI GATC 4 cut(s) 101, 145, 463, 817
Sau96I GGNCC 2 cut(s) 163, 377
SchI GAGTC 2 cut(s) 68, 720
SduI GDGCHC 3 cut(s) 194, 493, 616
SfaNI GCATC 1 cut(s) 39
SfcI CTRYAG 1 cut(s) 153
SinI GGWCC 1 cut(s) 163
SmiMI CAYNNNNRTG 3 cut(s) 35, 41, 47
SmlI CTYRAG 1 cut(s) 770
SmoI CTYRAG 1 cut(s) 770
Sse9I AATT 5 cut(s) 418, 545, 619, 720, 899
SspI AATATT 1 cut(s) 874
SspMI CTAG 5 cut(s) 215, 264, 708, 858, 920
SstI GAGCTC 1 cut(s) 493
StyI CCWWGG 2 cut(s) 105, 273
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 1 cut(s) 509
TaqI TCGA 3 cut(s) 86, 597, 616
TasI AATT 5 cut(s) 418, 545, 619, 720, 899
TatI WGTACW 2 cut(s) 90, 260
TfiI GAWTC 4 cut(s) 52, 324, 335, 698
Tru1I TTAA 5 cut(s) 341, 411, 482, 549, 879
Tru9I TTAA 5 cut(s) 341, 411, 482, 549, 879
TscAI CASTG 1 cut(s) 503
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 1 cut(s) 947
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 9 cut(s) 53, 65, 410, 411, 450, 692, 714, 837, 912
TspGWI ACGGA 3 cut(s) 336, 501, 599
TspRI CASTG 1 cut(s) 503
VpaK11BI GGWCC 1 cut(s) 163
VspI ATTAAT 1 cut(s) 879
XapI RAATTY 4 cut(s) 418, 545, 720, 899
XbaI TCTAGA 1 cut(s) 214
XspI CTAG 5 cut(s) 215, 264, 708, 858, 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.