Rorug05G0336000

F-box Kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000113
Physical Location & Seq
Forward (+)
40779204 .. 40784520
5317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0336000.1

Sequence Viewer

Length: 522 bp
ATGGCAAATCAAGGTGCAAAAAAGCGCAAGGAAGAGAATGCTCGGCACATGGCAAATATACGTCGCCTGATTGTGGCCTGCAATGTGATTTATGTGGTAGTAAGGATGCTCATCTTCCATTCTACTTTTACCTGGAAAAACTGGGTTGCTTTGCTGCTGACATCTGTAATTTATTATATTCCCTATCAACAACTTGCCCAAATGGCAAATCCTTCTTATGCTGATGATGGCGAACTTCTAGACGGCGGATTTGATATGACCACTGGTGGAGTGTGTGGCTATTTACATGACGTAATCTACATTACAAGCTTCGTGCAAGTCATGTCCATAATCTCTGGAAAATTTTGGTATACGTATCTGCTGATACCACGTTTTGGAGCATACAAATCATTTGGTTTCTTTAGAGGATTTATGTCCCAAAGTTCAGAGGGAGGCTTGGAGGATGAAAAGACACGAAAGAAGAGGGAAAAGATGGAGAAGAAGGCTTCAAGAGCCCAGTTTGTCAAGACAAGAAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

173

Amino Acids

20.01

Weight (kDa)

9.79

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM208_SND2 PF05620 1 - 162 2.3e-56 SRP-independent targeting protein 2/TMEM208
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 374
AccI GTMKAC 1 cut(s) 350
AciI CCGC 1 cut(s) 246
AcsI RAATTY 1 cut(s) 341
AfiI CCNNNNNNNGG 2 cut(s) 73, 374
AgsI TTSAA 1 cut(s) 489
AjnI CCWGG 1 cut(s) 131
AluBI AGCT 1 cut(s) 309
AluI AGCT 1 cut(s) 309
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 154
ApoI RAATTY 1 cut(s) 341
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
AspLEI GCGC 1 cut(s) 27
BanII GRGCYC 1 cut(s) 496
BbvI GCAGC 1 cut(s) 141
BccI CCATC 2 cut(s) 221, 466
BceAI ACGGC 1 cut(s) 259
BciT130I CCWGG 1 cut(s) 133
BfaI CTAG 1 cut(s) 239
BglI GCCNNNNNGGC 1 cut(s) 203
BisI GCNGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 156
Bme1390I CCNGG 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 133
BmrI ACTGGG 2 cut(s) 151, 490
BmsI GCATC 1 cut(s) 96
BmuI ACTGGG 2 cut(s) 151, 490
BsaAI YACGTR 1 cut(s) 354
BsaBI GATNNNNATC 1 cut(s) 110
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 374
Bse1I ACTGG 3 cut(s) 146, 268, 496
Bse3DI GCAATG 1 cut(s) 88
Bse8I GATNNNNATC 1 cut(s) 110
BseBI CCWGG 1 cut(s) 133
BseGI GGATG 2 cut(s) 111, 448
BseJI GATNNNNATC 1 cut(s) 110
BseLI CCNNNNNNNGG 2 cut(s) 73, 374
BseMI GCAATG 1 cut(s) 88
BseNI ACTGG 3 cut(s) 146, 268, 496
BseXI GCAGC 1 cut(s) 141
BshFI GGCC 1 cut(s) 77
BslFI GGGAC 1 cut(s) 400
BslI CCNNNNNNNGG 2 cut(s) 73, 374
BsmFI GGGAC 1 cut(s) 400
BsmI GAATGC 1 cut(s) 43
BsnI GGCC 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 496
BspACI CCGC 1 cut(s) 246
BspANI GGCC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 88
BsrI ACTGG 3 cut(s) 146, 268, 496
BssNAI GTATAC 1 cut(s) 351
Bst1107I GTATAC 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 133
Bst6I CTCTTC 2 cut(s) 27, 455
BstBAI YACGTR 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 79
BstF5I GGATG 2 cut(s) 111, 448
BstHHI GCGC 1 cut(s) 27
BstMWI GCNNNNNNNGC 2 cut(s) 203, 491
BstNI CCWGG 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 131
BstSNI TACGTA 1 cut(s) 354
BstV1I GCAGC 1 cut(s) 141
BstZ17I GTATAC 1 cut(s) 351
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 2 cut(s) 111, 448
BtsIMutI CAGTG 1 cut(s) 261
Cac8I GCNNGC 1 cut(s) 79
CfoI GCGC 1 cut(s) 27
CviAII CATG 3 cut(s) 49, 287, 322
CviJI RGCY 6 cut(s) 77, 279, 309, 435, 485, 494
CviKI_1 RGCY 6 cut(s) 77, 279, 309, 435, 485, 494
Eam1104I CTCTTC 2 cut(s) 27, 455
EarI CTCTTC 2 cut(s) 27, 455
EciI GGCGGA 1 cut(s) 261
Eco105I TACGTA 1 cut(s) 354
Eco24I GRGCYC 1 cut(s) 496
EcoRII CCWGG 1 cut(s) 131
EcoT38I GRGCYC 1 cut(s) 496
FaeI CATG 3 cut(s) 52, 290, 325
FaqI GGGAC 1 cut(s) 400
FatI CATG 3 cut(s) 48, 286, 321
FblI GTMKAC 1 cut(s) 350
Fnu4HI GCNGC 1 cut(s) 155
FokI GGATG 2 cut(s) 118, 455
FriOI GRGCYC 1 cut(s) 496
Fsp4HI GCNGC 1 cut(s) 155
FspBI CTAG 1 cut(s) 239
GlaI GCGC 1 cut(s) 26
GluI GCNGC 1 cut(s) 155
HaeIII GGCC 1 cut(s) 77
HhaI GCGC 1 cut(s) 27
Hin1II CATG 3 cut(s) 52, 290, 325
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 307
Hpy166II GTNNAC 1 cut(s) 351
Hpy188I TCNGA 1 cut(s) 427
Hpy188III TCNNGA 4 cut(s) 239, 336, 489, 505
Hpy8I GTNNAC 1 cut(s) 351
Hpy99I CGWCG 1 cut(s) 66
HpyAV CCTTC 2 cut(s) 222, 475
HpyCH4IV ACGT 4 cut(s) 61, 291, 353, 370
HpyCH4V TGCA 3 cut(s) 17, 81, 316
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 491
HpySE526I ACGT 4 cut(s) 61, 291, 353, 370
Hsp92II CATG 3 cut(s) 52, 290, 325
HspAI GCGC 1 cut(s) 25
LmnI GCTCC 1 cut(s) 377
LpnPI CCDG 8 cut(s) 80, 91, 118, 127, 145, 249, 321, 509
Lsp1109I GCAGC 1 cut(s) 141
LweI GCATC 1 cut(s) 96
MaeI CTAG 1 cut(s) 239
MaeII ACGT 4 cut(s) 61, 291, 353, 370
MboII GAAGA 4 cut(s) 44, 106, 472, 490
MhlI GDGCHC 1 cut(s) 496
MluCI AATT 2 cut(s) 168, 341
MnlI CCTC 5 cut(s) 398, 421, 425, 433, 456
MspR9I CCNGG 1 cut(s) 133
Mva1269I GAATGC 1 cut(s) 43
MvaI CCWGG 1 cut(s) 133
MwoI GCNNNNNNNGC 2 cut(s) 203, 491
NlaIII CATG 3 cut(s) 52, 290, 325
NmeAIII GCCGAG 1 cut(s) 22
PctI GAATGC 1 cut(s) 43
PflMI CCANNNNNTGG 1 cut(s) 374
PkrI GCNGC 1 cut(s) 156
Ppu21I YACGTR 1 cut(s) 354
Psp6I CCWGG 1 cut(s) 131
PspGI CCWGG 1 cut(s) 131
SatI GCNGC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 133
SduI GDGCHC 1 cut(s) 496
SetI ASST 7 cut(s) 16, 64, 134, 294, 311, 356, 373
SfaNI GCATC 1 cut(s) 96
SnaBI TACGTA 1 cut(s) 354
Sse9I AATT 2 cut(s) 168, 341
SsiI CCGC 1 cut(s) 246
SspMI CTAG 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 131
TaiI ACGT 4 cut(s) 64, 294, 356, 373
TasI AATT 2 cut(s) 168, 341
TscAI CASTG 1 cut(s) 268
TseI GCWGC 1 cut(s) 154
TspDTI ATGAA 1 cut(s) 459
TspRI CASTG 1 cut(s) 268
Van91I CCANNNNNTGG 1 cut(s) 374
XapI RAATTY 1 cut(s) 341
XbaI TCTAGA 1 cut(s) 238
XmiI GTMKAC 1 cut(s) 350
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.