RLG00000020778

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
68642709 .. 68644985
2277 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020778

Sequence Viewer

Length: 654 bp
ATGACGAAGAGAACCAATCTCAGACCCCAATTGAAACCAATTTCGAAGCCAGCGCTCAAATTCCTATGGATGATTAGAAAAAAGAGACACCTCTCACTCTCTTCCCGGCGTTCTTCAACCGCCCCCGGCATGCCGGATGGCTGTGCCGCGGTCCTCACCGACCACGAAGATTATGCTTTATGGAACCCTTGTACTGGAGAGTACAATGTGTTGCCGAAACCTAGTGTTTTTTGTTATCCAAGGTATTATGGATTTGGTTATGATGAAATCAATGATGATTACAAGGTAGTGAAGGGGTCACATTGTGAAACTGATGGGAATGGTCCGCTGAAACCACTTATTCAGGTGTTTTCGCTGAGAAAAGGTACATGGAAGACCTATCCCGGCCCGAAGAATGTTTGCATGAGAGGGCAGGGGGCGTTTGTAAATGGAAAGCTGCATTGGCTGTGGTTTGAGGAGTGGTGGAATGCGGAAAGCAAGGAAATTAGACCTTTTAGTTTAGCTGAGGAGAAATTTCAGGAGGCGATGCTGATTCCTTGGAATAACATTGGTGGAATTCTGATTTCCGGGAATCGTCTCTGTGTGCATAGTGAAACAGGTGCTAAAGATGAAGAACCCAAGGAACCTAGTAGATATCCGGAGTCAGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

218

Amino Acids

24.86

Weight (kDa)

9.06

Isoelectric Point (pI)

48.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 53 - 182 1.7e-13 F-box associated beta propeller domain
FBA_3 PF08268 56 - 173 4.3e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 149
AccIII TCCGGA 1 cut(s) 637
AciI CCGC 5 cut(s) 120, 147, 149, 326, 470
AcsI RAATTY 3 cut(s) 59, 512, 555
AdeI CACNNNGTG 1 cut(s) 305
AfaI GTAC 3 cut(s) 193, 203, 367
AfeI AGCGCT 1 cut(s) 54
AfiI CCNNNNNNNGG 2 cut(s) 194, 644
AgsI TTSAA 2 cut(s) 34, 117
AjuI GAANNNNNNNTTGG 2 cut(s) 424, 456
AluBI AGCT 2 cut(s) 436, 503
AluI AGCT 2 cut(s) 436, 503
Alw26I GTCTC 2 cut(s) 79, 581
Aor13HI TCCGGA 1 cut(s) 637
Aor51HI AGCGCT 1 cut(s) 54
AoxI GGCC 1 cut(s) 385
ApeKI GCWGC 1 cut(s) 436
ApoI RAATTY 3 cut(s) 59, 512, 555
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 3 cut(s) 151, 323, 386
AsuC2I CCSGG 4 cut(s) 106, 126, 384, 568
AsuHPI GGTGA 1 cut(s) 148
AsuII TTCGAA 1 cut(s) 44
AvaII GGWCC 2 cut(s) 151, 323
BbsI GAAGAC 1 cut(s) 380
BbvCI CCTCAGC 1 cut(s) 504
BbvI GCAGC 1 cut(s) 423
BccI CCATC 2 cut(s) 131, 308
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BcnI CCSGG 4 cut(s) 106, 126, 384, 568
BcoDI GTCTC 2 cut(s) 79, 581
BfaI CTAG 2 cut(s) 222, 627
BfoI RGCGCY 1 cut(s) 56
BisI GCNGC 2 cut(s) 147, 437
BlsI GCNGC 2 cut(s) 148, 438
Bme1390I CCNGG 4 cut(s) 106, 126, 384, 568
Bme18I GGWCC 2 cut(s) 151, 323
BmgT120I GGNCC 3 cut(s) 151, 323, 386
BmiI GGNNCC 2 cut(s) 185, 624
BmrFI CCNGG 4 cut(s) 106, 126, 384, 568
BmsI GCATC 1 cut(s) 516
BpiI GAAGAC 1 cut(s) 380
BpmI CTGGAG 1 cut(s) 216
Bpu10I CCTNAGC 1 cut(s) 504
Bpu14I TTCGAA 1 cut(s) 44
BpuMI CCSGG 4 cut(s) 106, 126, 384, 568
BsaJI CCNNGG 5 cut(s) 124, 147, 239, 536, 618
BsaWI WCCGGW 1 cut(s) 637
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 644
Bse1I ACTGG 1 cut(s) 199
BseAI TCCGGA 1 cut(s) 637
BseDI CCNNGG 5 cut(s) 124, 147, 239, 536, 618
BseGI GGATG 2 cut(s) 75, 142
BseLI CCNNNNNNNGG 2 cut(s) 194, 644
BseMII CTCAG 3 cut(s) 34, 347, 495
BseNI ACTGG 1 cut(s) 199
BseRI GAGGAG 2 cut(s) 470, 521
BseXI GCAGC 1 cut(s) 423
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 1 cut(s) 387
BsiSI CCGG 6 cut(s) 106, 126, 134, 384, 567, 638
BslI CCNNNNNNNGG 2 cut(s) 194, 644
BsmAI GTCTC 2 cut(s) 79, 581
BsmBI CGTCTC 1 cut(s) 581
BsmI GAATGC 1 cut(s) 472
BsnI GGCC 1 cut(s) 387
Bsp119I TTCGAA 1 cut(s) 44
Bsp13I TCCGGA 1 cut(s) 637
BspACI CCGC 5 cut(s) 120, 147, 149, 326, 470
BspANI GGCC 1 cut(s) 387
BspCNI CTCAG 3 cut(s) 33, 348, 496
BspEI TCCGGA 1 cut(s) 637
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 2 cut(s) 185, 624
BspT104I TTCGAA 1 cut(s) 44
BsrI ACTGG 1 cut(s) 199
BssECI CCNNGG 5 cut(s) 124, 147, 239, 536, 618
BssT1I CCWWGG 3 cut(s) 239, 536, 618
Bst6I CTCTTC 2 cut(s) 2, 106
BstBI TTCGAA 1 cut(s) 44
BstC8I GCNNGC 2 cut(s) 51, 131
BstDEI CTNAG 3 cut(s) 20, 356, 504
BstDSI CCRYGG 1 cut(s) 147
BstF5I GGATG 2 cut(s) 75, 142
BstFNI CGCG 1 cut(s) 149
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 1 cut(s) 55
BstMAI GTCTC 2 cut(s) 79, 581
BstMWI GCNNNNNNNGC 1 cut(s) 442
BstNSI RCATGY 1 cut(s) 133
BstSCI CCNGG 4 cut(s) 104, 124, 382, 566
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 1 cut(s) 423
BstV2I GAAGAC 1 cut(s) 380
BsuRI GGCC 1 cut(s) 387
BtgI CCRYGG 1 cut(s) 147
BtgZI GCGATG 1 cut(s) 539
BtsCI GGATG 2 cut(s) 75, 142
Cac8I GCNNGC 2 cut(s) 51, 131
CfoI GCGC 1 cut(s) 55
Cfr13I GGNCC 3 cut(s) 151, 323, 386
Cfr42I CCGCGG 1 cut(s) 150
Csp6I GTAC 3 cut(s) 192, 202, 366
CviAII CATG 3 cut(s) 130, 369, 403
CviJI RGCY 6 cut(s) 49, 141, 387, 436, 445, 503
CviKI_1 RGCY 6 cut(s) 49, 141, 387, 436, 445, 503
CviQI GTAC 3 cut(s) 192, 202, 366
DdeI CTNAG 3 cut(s) 20, 356, 504
DraIII CACNNNGTG 1 cut(s) 305
Eam1104I CTCTTC 2 cut(s) 2, 106
EarI CTCTTC 2 cut(s) 2, 106
Eco130I CCWWGG 3 cut(s) 239, 536, 618
Eco32I GATATC 1 cut(s) 635
Eco47I GGWCC 2 cut(s) 151, 323
Eco47III AGCGCT 1 cut(s) 54
EcoRI GAATTC 1 cut(s) 555
EcoRV GATATC 1 cut(s) 635
EcoT14I CCWWGG 3 cut(s) 239, 536, 618
ErhI CCWWGG 3 cut(s) 239, 536, 618
Esp3I CGTCTC 1 cut(s) 581
FaeI CATG 3 cut(s) 133, 372, 406
FaiI YATR 9 cut(s) 67, 131, 174, 181, 249, 261, 370, 404, 588
FatI CATG 3 cut(s) 129, 368, 402
Fnu4HI GCNGC 2 cut(s) 147, 437
FokI GGATG 2 cut(s) 82, 149
Fsp4HI GCNGC 2 cut(s) 147, 437
FspBI CTAG 2 cut(s) 222, 627
GlaI GCGC 1 cut(s) 54
GluI GCNGC 2 cut(s) 147, 437
GsuI CTGGAG 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 1 cut(s) 387
HapII CCGG 6 cut(s) 106, 126, 134, 384, 567, 638
HhaI GCGC 1 cut(s) 55
Hin1II CATG 3 cut(s) 133, 372, 406
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HinfI GANTC 3 cut(s) 532, 571, 641
HpaII CCGG 6 cut(s) 106, 126, 134, 384, 567, 638
HphI GGTGA 1 cut(s) 148
Hpy188I TCNGA 2 cut(s) 23, 561
Hpy188III TCNNGA 3 cut(s) 518, 638, 645
HpyAV CCTTC 1 cut(s) 286
HpyCH4V TGCA 3 cut(s) 402, 439, 586
HpyF10VI GCNNNNNNNGC 1 cut(s) 442
HpyF3I CTNAG 3 cut(s) 20, 356, 504
Hsp92II CATG 3 cut(s) 133, 372, 406
HspAI GCGC 1 cut(s) 53
Kpn2I TCCGGA 1 cut(s) 637
KspI CCGCGG 1 cut(s) 150
Lsp1109I GCAGC 1 cut(s) 423
LweI GCATC 1 cut(s) 516
MaeI CTAG 2 cut(s) 222, 627
MaeIII GTNAC 1 cut(s) 297
MboII GAAGA 7 cut(s) 19, 93, 105, 179, 385, 403, 623
MfeI CAATTG 1 cut(s) 29
MluCI AATT 6 cut(s) 29, 39, 59, 483, 512, 555
MlyI GAGTC 1 cut(s) 650
MnlI CCTC 6 cut(s) 101, 164, 401, 448, 499, 514
MroI TCCGGA 1 cut(s) 637
MspA1I CMGCKG 2 cut(s) 149, 328
MspI CCGG 6 cut(s) 106, 126, 134, 384, 567, 638
MspR9I CCNGG 4 cut(s) 106, 126, 384, 568
MunI CAATTG 1 cut(s) 29
Mva1269I GAATGC 1 cut(s) 472
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 442
NciI CCSGG 4 cut(s) 106, 126, 384, 568
NlaIII CATG 3 cut(s) 133, 372, 406
NlaIV GGNNCC 2 cut(s) 185, 624
NmuCI GTSAC 1 cut(s) 297
NspI RCATGY 1 cut(s) 133
NspV TTCGAA 1 cut(s) 44
PaeI GCATGC 1 cut(s) 133
PctI GAATGC 1 cut(s) 472
PfeI GAWTC 2 cut(s) 532, 571
PfoI TCCNGGA 1 cut(s) 566
PkrI GCNGC 2 cut(s) 148, 438
PleI GAGTC 1 cut(s) 649
PpsI GAGTC 1 cut(s) 649
PspN4I GGNNCC 2 cut(s) 185, 624
PspPI GGNCC 3 cut(s) 151, 323, 386
RsaI GTAC 3 cut(s) 193, 203, 367
RsaNI GTAC 3 cut(s) 192, 202, 366
SacII CCGCGG 1 cut(s) 150
SatI GCNGC 2 cut(s) 147, 437
Sau96I GGNCC 3 cut(s) 151, 323, 386
SchI GAGTC 1 cut(s) 650
ScrFI CCNGG 4 cut(s) 106, 126, 384, 568
SfaNI GCATC 1 cut(s) 516
Sfr303I CCGCGG 1 cut(s) 150
SfuI TTCGAA 1 cut(s) 44
SgrBI CCGCGG 1 cut(s) 150
SinI GGWCC 2 cut(s) 151, 323
SphI GCATGC 1 cut(s) 133
Sse9I AATT 6 cut(s) 29, 39, 59, 483, 512, 555
SsiI CCGC 5 cut(s) 120, 147, 149, 326, 470
SspMI CTAG 2 cut(s) 222, 627
StyD4I CCNGG 4 cut(s) 104, 124, 382, 566
StyI CCWWGG 3 cut(s) 239, 536, 618
TaqI TCGA 1 cut(s) 44
TasI AATT 6 cut(s) 29, 39, 59, 483, 512, 555
TatI WGTACW 2 cut(s) 191, 201
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 2 cut(s) 532, 571
TseFI GTSAC 1 cut(s) 297
TseI GCWGC 1 cut(s) 436
Tsp45I GTSAC 1 cut(s) 297
TspDTI ATGAA 2 cut(s) 279, 624
VpaK11BI GGWCC 2 cut(s) 151, 323
XapI RAATTY 3 cut(s) 59, 512, 555
XceI RCATGY 1 cut(s) 133
XspI CTAG 2 cut(s) 222, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.