FvH4_1g03001

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000113
Physical Location & Seq
Reverse (-)
1697361 .. 1697642
282 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03001.t1

Sequence Viewer

Length: 282 bp
ATGGCCGACGCGGCAGTGAACCGGAAGCGAGAAATGGACCCCACCGGGGAGGCGAAACGACTGCGTTCCGACCTTGTCGAAAACGACGACGTCATTGCGGAGATACTGGTACGCCTGCCGGTGAAATCCCTAATAAGATTCCGGTGCGTATGCAAGTCATGGCGGGCTTTGATTTCCGCGCCCTATTTCGTCAACCGCCACCTCCGCCGCGTCACCACCGGCCTTAACAAGAACAGGTGCAACCTCCTCCTTCCCGGACCGGAACATCTCTCAAGTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

94

Amino Acids

10.63

Weight (kDa)

10.04

Isoelectric Point (pI)

47.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 29 - 63 2.3e-10 F-box domain
F-box-like PF12937 29 - 65 2.1e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 93
AccII CGCG 3 cut(s) 11, 179, 210
AciI CCGC 7 cut(s) 11, 98, 163, 177, 196, 205, 208
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 46
AoxI GGCC 2 cut(s) 3, 220
AspLEI GCGC 1 cut(s) 181
AspS9I GGNCC 2 cut(s) 37, 257
AsuC2I CCSGG 2 cut(s) 46, 255
AsuHPI GGTGA 2 cut(s) 133, 205
AvaII GGWCC 2 cut(s) 37, 257
BcgI CGANNNNNNTGC 4 cut(s) 43, 77, 77, 111
BcnI CCSGG 2 cut(s) 46, 255
BfmI CTRYAG 1 cut(s) 278
BglI GCCNNNNNGGC 1 cut(s) 11
BisI GCNGC 2 cut(s) 12, 208
BlsI GCNGC 2 cut(s) 13, 209
Bme1390I CCNGG 2 cut(s) 46, 255
Bme18I GGWCC 2 cut(s) 37, 257
BmgT120I GGNCC 2 cut(s) 37, 257
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 2 cut(s) 46, 255
BpuEI CTTGAG 1 cut(s) 256
BpuMI CCSGG 2 cut(s) 46, 255
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 45
BsaWI WCCGGW 3 cut(s) 21, 141, 259
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse118I RCCGGY 2 cut(s) 118, 218
Bse1I ACTGG 1 cut(s) 111
Bse3DI GCAATG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 45
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMI GCAATG 1 cut(s) 93
BseNI ACTGG 1 cut(s) 111
BseRI GAGGAG 1 cut(s) 236
Bsh1236I CGCG 3 cut(s) 11, 179, 210
BshFI GGCC 2 cut(s) 5, 222
BsiSI CCGG 7 cut(s) 22, 45, 119, 142, 219, 255, 260
BslI CCNNNNNNNGG 1 cut(s) 46
BsnI GGCC 2 cut(s) 5, 222
BspACI CCGC 7 cut(s) 11, 98, 163, 177, 196, 205, 208
BspANI GGCC 2 cut(s) 5, 222
BspFNI CGCG 3 cut(s) 11, 179, 210
BspLI GGNNCC 1 cut(s) 39
BsrDI GCAATG 1 cut(s) 93
BsrFI RCCGGY 2 cut(s) 118, 218
BsrI ACTGG 1 cut(s) 111
BssAI RCCGGY 2 cut(s) 118, 218
BssECI CCNNGG 1 cut(s) 45
BssNI GRCGYC 1 cut(s) 90
BstACI GRCGYC 1 cut(s) 90
BstC8I GCNNGC 2 cut(s) 116, 165
BstFNI CGCG 3 cut(s) 11, 179, 210
BstHHI GCGC 1 cut(s) 181
BstMWI GCNNNNNNNGC 2 cut(s) 11, 204
BstSCI CCNGG 2 cut(s) 44, 253
BstSFI CTRYAG 1 cut(s) 278
BstUI CGCG 3 cut(s) 11, 179, 210
BsuRI GGCC 2 cut(s) 5, 222
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 2 cut(s) 116, 165
CfoI GCGC 1 cut(s) 181
Cfr10I RCCGGY 2 cut(s) 118, 218
Cfr13I GGNCC 2 cut(s) 37, 257
CpoI CGGWCCG 1 cut(s) 257
CseI GACGC 2 cut(s) 17, 199
Csp6I GTAC 1 cut(s) 110
CspI CGGWCCG 1 cut(s) 257
CviAII CATG 1 cut(s) 159
CviJI RGCY 3 cut(s) 5, 167, 222
CviKI_1 RGCY 3 cut(s) 5, 167, 222
CviQI GTAC 1 cut(s) 110
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 194
Eco47I GGWCC 2 cut(s) 37, 257
FaeI CATG 1 cut(s) 162
FaiI YATR 2 cut(s) 151, 160
FatI CATG 1 cut(s) 158
FauI CCCGC 1 cut(s) 156
Fnu4HI GCNGC 2 cut(s) 12, 208
Fsp4HI GCNGC 2 cut(s) 12, 208
GlaI GCGC 1 cut(s) 180
GluI GCNGC 2 cut(s) 12, 208
HaeIII GGCC 2 cut(s) 5, 222
HapII CCGG 7 cut(s) 22, 45, 119, 142, 219, 255, 260
HgaI GACGC 2 cut(s) 17, 199
HhaI GCGC 1 cut(s) 181
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 1 cut(s) 162
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 1 cut(s) 138
HpaII CCGG 7 cut(s) 22, 45, 119, 142, 219, 255, 260
HphI GGTGA 2 cut(s) 133, 205
Hpy166II GTNNAC 2 cut(s) 19, 193
Hpy188I TCNGA 1 cut(s) 70
Hpy8I GTNNAC 2 cut(s) 19, 193
Hpy99I CGWCG 3 cut(s) 11, 89, 92
HpyAV CCTTC 1 cut(s) 260
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 2 cut(s) 153, 240
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 204
HpySE526I ACGT 1 cut(s) 90
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 1 cut(s) 162
HspAI GCGC 1 cut(s) 179
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 1 cut(s) 211
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 4 cut(s) 43, 212, 254, 257
MseI TTAA 1 cut(s) 225
MspI CCGG 7 cut(s) 22, 45, 119, 142, 219, 255, 260
MspR9I CCNGG 2 cut(s) 46, 255
MvnI CGCG 3 cut(s) 11, 179, 210
MwoI GCNNNNNNNGC 2 cut(s) 11, 204
NciI CCSGG 2 cut(s) 46, 255
NlaIII CATG 1 cut(s) 162
NlaIV GGNNCC 1 cut(s) 39
NmuCI GTSAC 1 cut(s) 211
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PfeI GAWTC 1 cut(s) 138
PflFI GACNNNGTC 2 cut(s) 74, 89
PfoI TCCNGGA 1 cut(s) 253
PkrI GCNGC 2 cut(s) 13, 209
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 2 cut(s) 37, 257
PsyI GACNNNGTC 2 cut(s) 74, 89
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
Rsr2I CGGWCCG 1 cut(s) 257
RsrII CGGWCCG 1 cut(s) 257
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 2 cut(s) 12, 208
Sau96I GGNCC 2 cut(s) 37, 257
ScrFI CCNGG 2 cut(s) 46, 255
SetI ASST 5 cut(s) 75, 93, 204, 239, 246
SfcI CTRYAG 1 cut(s) 278
SinI GGWCC 2 cut(s) 37, 257
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
SsiI CCGC 7 cut(s) 11, 98, 163, 177, 196, 205, 208
StyD4I CCNGG 2 cut(s) 44, 253
TaiI ACGT 1 cut(s) 93
TaqI TCGA 1 cut(s) 78
TauI GCSGC 2 cut(s) 14, 210
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 211
TspRI CASTG 1 cut(s) 21
Tth111I GACNNNGTC 2 cut(s) 74, 89
VpaK11BI GGWCC 2 cut(s) 37, 257
ZraI GACGTC 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.