Rorug06G0095900

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000113
Physical Location & Seq
Reverse (-)
12817942 .. 12820943
3002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0095900.1

Sequence Viewer

Length: 768 bp
ATGACTGAGTATTGGGTTAGCCAGGGAAACAAATGGTGTGACTTCTGCAAAATCTACATATCAAACAATCCTTCTAGCATTAGAAATCATGAGCTTGGTACGCGTCACAAGGATGCTGTTGCTAAGAAGCTTGCTGATATGCGAAAAGACAGAGCTGCTAAGGAGAAGGAAGAAAAGGAAGCAGAACGTGCCCTCTTGCAAATTGAAGCAAAAGCTAAGCGCAGCTATCAAAAGGATATGACGAACTTTCAGGAGGCTAGAGATACTCATGCTCTTGCACTAGATGTTGGGGATGATGGTGAAGAGAAATGGCAGTATGACAGCGCTTCTGGTTATTACTACCATCAAAATAATGGCTTTTGCTATGATGCGAACTCCGGTTTCTACTATTCTGATTCTATAGGCAAATGGGTGACACAGGAAGAGGCATATGCAACCCCTCAGTTTTTGTCAAATTCTGGACATAAATCAACAATGTTGAGGAAGCAAACGCCAACTTCACAGACTGGATCAGCTTCAGAAAATAAAGGTGCTGATAAAGCCAAAAATGGGCCTCCACCTGGGCCAGTGATTCCAACTTCTTTAAATTCTATGAGATCTGTTAAAGGTGCTCCCTCTAAAGTTGTCGTTGGCAAAAGAAAGAGGCAAGAGCAGAAGCCAAGGGCTATGACTGCAGAAGAAGCAGCTGCACTTAAAACAAGGGAGGCCGCCAGGAAGAGAGTTCAAGACAGAGAGAAACCATTGCTTGGCCTTTACAGGCCACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

255

Amino Acids

28.78

Weight (kDa)

9.4

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-U1 PF06220 11 - 42 4.8e-07 U1 zinc finger
OCRE PF17780 102 - 150 5.1e-16 OCRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 746
AccII CGCG 1 cut(s) 103
AciI CCGC 1 cut(s) 708
AclWI GGATC 1 cut(s) 517
AcsI RAATTY 2 cut(s) 454, 586
AcuI CTGAAG 1 cut(s) 501
AfaI GTAC 1 cut(s) 100
AfeI AGCGCT 1 cut(s) 325
AfiI CCNNNNNNNGG 3 cut(s) 549, 560, 746
AflIII ACRYGT 1 cut(s) 101
AgsI TTSAA 2 cut(s) 206, 725
AjnI CCWGG 3 cut(s) 21, 559, 710
AluBI AGCT 7 cut(s) 94, 130, 155, 215, 225, 515, 686
AluI AGCT 7 cut(s) 94, 130, 155, 215, 225, 515, 686
Alw21I GWGCWC 1 cut(s) 613
AlwI GGATC 1 cut(s) 517
Aor51HI AGCGCT 1 cut(s) 325
AoxI GGCC 5 cut(s) 551, 563, 705, 748, 758
ApeKI GCWGC 4 cut(s) 155, 222, 683, 686
ApoI RAATTY 2 cut(s) 454, 586
AspLEI GCGC 2 cut(s) 222, 326
AspS9I GGNCC 2 cut(s) 551, 563
AsuHPI GGTGA 2 cut(s) 311, 424
BaeGI GKGCMC 1 cut(s) 193
Bbv12I GWGCWC 1 cut(s) 613
BbvI GCAGC 4 cut(s) 142, 234, 673, 695
BccI CCATC 2 cut(s) 290, 351
BciT130I CCWGG 3 cut(s) 23, 561, 712
BfaI CTAG 3 cut(s) 75, 258, 281
BfmI CTRYAG 2 cut(s) 399, 672
BfoI RGCGCY 1 cut(s) 327
BglII AGATCT 1 cut(s) 596
BisI GCNGC 5 cut(s) 156, 223, 684, 687, 708
BlpI GCTNAGC 1 cut(s) 216
BlsI GCNGC 5 cut(s) 157, 224, 685, 688, 709
Bme1390I CCNGG 3 cut(s) 23, 561, 712
BmgT120I GGNCC 2 cut(s) 551, 563
BmrFI CCNGG 3 cut(s) 23, 561, 712
BmsI GCATC 2 cut(s) 103, 358
Bpu10I CCTNAGC 1 cut(s) 159
Bpu1102I GCTNAGC 1 cut(s) 216
BsaJI CCNNGG 3 cut(s) 22, 560, 659
BsaWI WCCGGW 1 cut(s) 377
Bsc4I CCNNNNNNNGG 3 cut(s) 549, 560, 746
Bse1I ACTGG 2 cut(s) 511, 566
Bse3DI GCAATG 1 cut(s) 740
BseBI CCWGG 3 cut(s) 23, 561, 712
BseDI CCNNGG 3 cut(s) 22, 560, 659
BseGI GGATG 2 cut(s) 118, 298
BseLI CCNNNNNNNGG 3 cut(s) 549, 560, 746
BseMI GCAATG 1 cut(s) 740
BseMII CTCAG 1 cut(s) 455
BseNI ACTGG 2 cut(s) 511, 566
BseSI GKGCMC 1 cut(s) 193
BseXI GCAGC 4 cut(s) 142, 234, 673, 695
BsgI GTGCAG 1 cut(s) 672
Bsh1236I CGCG 1 cut(s) 103
BshFI GGCC 5 cut(s) 553, 565, 707, 750, 760
BsiHKAI GWGCWC 1 cut(s) 613
BsiSI CCGG 1 cut(s) 378
BslI CCNNNNNNNGG 3 cut(s) 549, 560, 746
BsnI GGCC 5 cut(s) 553, 565, 707, 750, 760
Bsp1286I GDGCHC 2 cut(s) 193, 613
Bsp143I GATC 2 cut(s) 509, 596
Bsp1720I GCTNAGC 1 cut(s) 216
BspACI CCGC 1 cut(s) 708
BspANI GGCC 5 cut(s) 553, 565, 707, 750, 760
BspCNI CTCAG 1 cut(s) 454
BspFNI CGCG 1 cut(s) 103
BspHI TCATGA 1 cut(s) 88
BspMAI CTGCAG 1 cut(s) 676
BspPI GGATC 1 cut(s) 517
BsrDI GCAATG 1 cut(s) 740
BsrI ACTGG 2 cut(s) 511, 566
BssECI CCNNGG 3 cut(s) 22, 560, 659
BssMI GATC 2 cut(s) 509, 596
BssT1I CCWWGG 1 cut(s) 659
Bst2UI CCWGG 3 cut(s) 23, 561, 712
Bst6I CTCTTC 3 cut(s) 297, 417, 710
BstAPI GCANNNNNTGC 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 5 cut(s) 6, 123, 159, 216, 441
BstF5I GGATG 2 cut(s) 118, 298
BstFNI CGCG 1 cut(s) 103
BstH2I RGCGCY 1 cut(s) 327
BstHHI GCGC 2 cut(s) 222, 326
BstKTI GATC 2 cut(s) 512, 599
BstMBI GATC 2 cut(s) 509, 596
BstMWI GCNNNNNNNGC 5 cut(s) 100, 188, 539, 671, 680
BstNI CCWGG 3 cut(s) 23, 561, 712
BstSCI CCNGG 3 cut(s) 21, 559, 710
BstSFI CTRYAG 2 cut(s) 399, 672
BstSLI GKGCMC 1 cut(s) 193
BstUI CGCG 1 cut(s) 103
BstV1I GCAGC 4 cut(s) 142, 234, 673, 695
BstX2I RGATCY 1 cut(s) 596
BstYI RGATCY 1 cut(s) 596
BsuRI GGCC 5 cut(s) 553, 565, 707, 750, 760
BtsCI GGATG 2 cut(s) 118, 298
BtsIMutI CAGTG 1 cut(s) 573
Cac8I GCNNGC 1 cut(s) 132
CciI TCATGA 1 cut(s) 88
CfoI GCGC 2 cut(s) 222, 326
Cfr13I GGNCC 2 cut(s) 551, 563
CseI GACGC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 99
CviAII CATG 2 cut(s) 89, 269
CviQI GTAC 1 cut(s) 99
DdeI CTNAG 5 cut(s) 6, 123, 159, 216, 441
DpnI GATC 2 cut(s) 511, 598
DpnII GATC 2 cut(s) 509, 596
DraI TTTAAA 1 cut(s) 585
Eam1104I CTCTTC 3 cut(s) 297, 417, 710
EarI CTCTTC 3 cut(s) 297, 417, 710
Eco130I CCWWGG 1 cut(s) 659
Eco47III AGCGCT 1 cut(s) 325
Eco57I CTGAAG 1 cut(s) 501
EcoRII CCWGG 3 cut(s) 21, 559, 710
EcoT14I CCWWGG 1 cut(s) 659
ErhI CCWWGG 1 cut(s) 659
FaeI CATG 2 cut(s) 92, 272
FatI CATG 2 cut(s) 88, 268
FauNDI CATATG 1 cut(s) 430
Fnu4HI GCNGC 5 cut(s) 156, 223, 684, 687, 708
FokI GGATG 2 cut(s) 125, 305
Fsp4HI GCNGC 5 cut(s) 156, 223, 684, 687, 708
FspBI CTAG 3 cut(s) 75, 258, 281
GlaI GCGC 2 cut(s) 221, 325
GluI GCNGC 5 cut(s) 156, 223, 684, 687, 708
HaeII RGCGCY 1 cut(s) 327
HaeIII GGCC 5 cut(s) 553, 565, 707, 750, 760
HapII CCGG 1 cut(s) 378
HgaI GACGC 1 cut(s) 92
HhaI GCGC 2 cut(s) 222, 326
Hin1II CATG 2 cut(s) 92, 272
Hin6I GCGC 2 cut(s) 220, 324
HinP1I GCGC 2 cut(s) 220, 324
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 2 cut(s) 395, 571
HpaII CCGG 1 cut(s) 378
HphI GGTGA 2 cut(s) 311, 424
Hpy188I TCNGA 2 cut(s) 394, 520
Hpy188III TCNNGA 4 cut(s) 89, 251, 459, 725
HpyAV CCTTC 2 cut(s) 81, 160
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 6 cut(s) 48, 199, 278, 434, 674, 689
HpyF10VI GCNNNNNNNGC 5 cut(s) 100, 188, 539, 671, 680
HpyF3I CTNAG 5 cut(s) 6, 123, 159, 216, 441
HpySE526I ACGT 1 cut(s) 187
Hsp92II CATG 2 cut(s) 92, 272
HspAI GCGC 2 cut(s) 220, 324
Kzo9I GATC 2 cut(s) 509, 596
LmnI GCTCC 1 cut(s) 616
Lsp1109I GCAGC 4 cut(s) 142, 234, 673, 695
LweI GCATC 2 cut(s) 103, 358
MaeI CTAG 3 cut(s) 75, 258, 281
MaeII ACGT 1 cut(s) 187
MaeIII GTNAC 3 cut(s) 38, 104, 412
MalI GATC 2 cut(s) 511, 598
MboI GATC 2 cut(s) 509, 596
MboII GAAGA 5 cut(s) 182, 314, 434, 689, 727
MflI RGATCY 1 cut(s) 596
MhlI GDGCHC 2 cut(s) 193, 613
MluCI AATT 3 cut(s) 201, 454, 586
MluI ACGCGT 1 cut(s) 101
MmeI TCCRAC 1 cut(s) 599
MnlI CCTC 9 cut(s) 203, 247, 418, 450, 474, 564, 625, 636, 697
MseI TTAA 3 cut(s) 584, 603, 693
MslI CAYNNNNRTG 1 cut(s) 111
MspA1I CMGCKG 1 cut(s) 686
MspI CCGG 1 cut(s) 378
MspR9I CCNGG 3 cut(s) 23, 561, 712
MvaI CCWGG 3 cut(s) 23, 561, 712
MvnI CGCG 1 cut(s) 103
MwoI GCNNNNNNNGC 5 cut(s) 100, 188, 539, 671, 680
NdeI CATATG 1 cut(s) 430
NdeII GATC 2 cut(s) 509, 596
NlaIII CATG 2 cut(s) 92, 272
NmuCI GTSAC 3 cut(s) 38, 104, 412
PagI TCATGA 1 cut(s) 88
PfeI GAWTC 2 cut(s) 395, 571
PflMI CCANNNNNTGG 1 cut(s) 746
PkrI GCNGC 5 cut(s) 157, 224, 685, 688, 709
Psp6I CCWGG 3 cut(s) 21, 559, 710
PspGI CCWGG 3 cut(s) 21, 559, 710
PspPI GGNCC 2 cut(s) 551, 563
PstI CTGCAG 1 cut(s) 676
PsuI RGATCY 1 cut(s) 596
PvuII CAGCTG 1 cut(s) 686
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
RseI CAYNNNNRTG 1 cut(s) 111
SaqAI TTAA 3 cut(s) 584, 603, 693
SatI GCNGC 5 cut(s) 156, 223, 684, 687, 708
Sau3AI GATC 2 cut(s) 509, 596
Sau96I GGNCC 2 cut(s) 551, 563
ScrFI CCNGG 3 cut(s) 23, 561, 712
SduI GDGCHC 2 cut(s) 193, 613
SfaNI GCATC 2 cut(s) 103, 358
SfcI CTRYAG 2 cut(s) 399, 672
SmiMI CAYNNNNRTG 1 cut(s) 111
Sse9I AATT 3 cut(s) 201, 454, 586
SsiI CCGC 1 cut(s) 708
SspMI CTAG 3 cut(s) 75, 258, 281
StyD4I CCNGG 3 cut(s) 21, 559, 710
StyI CCWWGG 1 cut(s) 659
TaiI ACGT 1 cut(s) 190
TasI AATT 3 cut(s) 201, 454, 586
TauI GCSGC 1 cut(s) 710
TfiI GAWTC 2 cut(s) 395, 571
Tru1I TTAA 3 cut(s) 584, 603, 693
Tru9I TTAA 3 cut(s) 584, 603, 693
TscAI CASTG 1 cut(s) 573
TseFI GTSAC 3 cut(s) 38, 104, 412
TseI GCWGC 4 cut(s) 155, 222, 683, 686
Tsp45I GTSAC 3 cut(s) 38, 104, 412
TspRI CASTG 1 cut(s) 573
Van91I CCANNNNNTGG 1 cut(s) 746
XapI RAATTY 2 cut(s) 454, 586
XcmI CCANNNNNNNNNTGG 1 cut(s) 350
XspI CTAG 3 cut(s) 75, 258, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.