MD00G1070000.v1.1

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0000113
Physical Location & Seq
Reverse (-)
13648968 .. 13650377
1410 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1070000.v1.1.491

Sequence Viewer

Length: 1410 bp
ATGGGAACCTTATTGGATCATTCCAATATGCATAATGAACACGATGATCAGCGGCAGCTTCCTTATGAGATTGCGGAGGAAATTCTGCTGCAACTGCCGGTGAAGTCCCTTCTTCGTTTCAGAAGCGTATGCAAGCCATGGCTTGCTCTCATCTCCGACCCAAAGTTTGTCAAGTCACACCTCCTTATCCGCTCTACCAAACAAGATGACGATGACGATGATCGTGATCATGATCATGATGCTCACGGCAAAACTACATCGTCAAAAGCACGACTCATGCTCTCCTCTTTGTCCCTCCTCCAGTCCGTCCACATACAAGTTCTCAATACCACTACTATTGATGCACCCGCAACGGCAACCTTGCCATCCCGTGGCGACGGTGAAGCAGAAAGTCTAGCAGAAGCAAAGGCAGAAACAGAAGCGAAGGCAGAAGCAGCTGGCACAACTGGTGCTAATAGTACTACAAGGGTCGTGGAGGCGGAGCATGAGTACTCTGTGATAATGAGGCGGCCGGTCAAAGACATGAAGATTGTCGGCTCTTGTAACGGCCTGGTGTGTTTGGTGGTTGACTCGGAAGATATGATGATTTATAATCCATCCACCAGGCAGGTTCATGCAGCCCCAAAGTTGCCGACAATCTCCGGTAAGGATTACTTCTATGGCTTCGGTTACGATTCGCGCAAGGAAGACTATAAAATAGTGAGGGCCACTTCTTCAAGTAAGGCCGGCGTTTTCGCCACCCAACTTGACATTTATTCTTTGAAGACCAATACATGGAGAGCCAGGTCCGAAACCCTGCCTTTTTACTTACTGTTCAACCTTGTCGGAACCCTACTCAACGGGGCTCTCCACTGGGCAGTCCGCCGCGGAAAGACTACTGATCAAGCTTCCGCAAATGGTGACGATGAGAGACCTTTCTCAATCGTTTCTTTCGATATAGCGGAGGAGACGTACCGGCAAGTTCCCCTACCGGGAGACGGCGACAAGAATTTCTCGTTCTATGGTTTGGGGGTTTTAGGAGGGCGGCTGAGTATGCTTCACAGCCCTCATGGGTCTGATTACCAGGTGTGGTTAATGAATGAGTACGGGGTCAAGGCATCTTGGTCTATTTTCACTACCATTCCGCGGAAGATGGATTCTGAATACCTAGGGCTGATGTCACTTCTGAGTATTTTGAAGAACGGGGAGATTCTAATCCTCTTGCATCAAAGGAAACTAGTCATTTACAATCAGGCAGACAGAAACTTCCGAGCCGTCTTTGCCGGGGATGTACACTCTTCCCAAGTGGTTTTGTACATGGAGAGCCTTGCTCCTCCCACAGCCAGAGGCGGAGAGCCGATTTCTGTCCCCAGCCCAGCCGGCTCTCCGCCATGTCCAAGTCCGACTAGTAATCTGAAACCCCAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

470

Amino Acids

51.89

Weight (kDa)

6.12

Isoelectric Point (pI)

44.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 19 - 57 2.1e-09 F-box domain
F-box-like PF12937 19 - 56 3.1e-07 F-box-like
FBA_1 PF07734 157 - 437 4.9e-28 F-box associated beta propeller domain
FBA_3 PF08268 163 - 423 2.6e-22 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 172 - 376 5.8e-06 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 591
Acc36I ACCTGC 1 cut(s) 598
AccB7I CCANNNNNTGG 2 cut(s) 371, 774
AccBSI CCGCTC 1 cut(s) 192
AccII CGCG 3 cut(s) 679, 867, 1126
AclWI GGATC 1 cut(s) 24
AcoI YGGCCR 1 cut(s) 509
AcsI RAATTY 2 cut(s) 81, 988
AfaI GTAC 6 cut(s) 460, 491, 953, 1085, 1272, 1295
AfiI CCNNNNNNNGG 5 cut(s) 371, 774, 971, 977, 1125
AgsI TTSAA 4 cut(s) 717, 763, 817, 1177
AhlI ACTAGT 2 cut(s) 1216, 1385
AjnI CCWGG 4 cut(s) 549, 602, 782, 1062
AluBI AGCT 3 cut(s) 58, 437, 887
AluI AGCT 3 cut(s) 58, 437, 887
Alw26I GTCTC 3 cut(s) 904, 941, 969
AlwI GGATC 1 cut(s) 24
AoxI GGCC 4 cut(s) 509, 547, 705, 723
ApeKI GCWGC 4 cut(s) 55, 88, 434, 617
ApoI RAATTY 2 cut(s) 81, 988
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
AspA2I CCTAGG 1 cut(s) 1147
AspLEI GCGC 1 cut(s) 681
AspS9I GGNCC 2 cut(s) 705, 786
AsuC2I CCSGG 2 cut(s) 972, 1264
AsuHPI GGTGA 3 cut(s) 112, 392, 911
AvaII GGWCC 1 cut(s) 786
AvrII CCTAGG 1 cut(s) 1147
BanII GRGCYC 1 cut(s) 847
BbsI GAAGAC 2 cut(s) 693, 770
BbvI GCAGC 4 cut(s) 67, 75, 446, 629
BccI CCATC 3 cut(s) 373, 604, 1126
BceAI ACGGC 5 cut(s) 262, 369, 562, 994, 1238
BciT130I CCWGG 4 cut(s) 551, 604, 784, 1064
BclI TGATCA 4 cut(s) 46, 226, 232, 880
BcnI CCSGG 2 cut(s) 972, 1264
BcoDI GTCTC 3 cut(s) 904, 941, 969
BcuI ACTAGT 2 cut(s) 1216, 1385
BfaI CTAG 4 cut(s) 395, 1148, 1217, 1386
BfuAI ACCTGC 1 cut(s) 598
BglI GCCNNNNNGGC 1 cut(s) 1359
BisI GCNGC 8 cut(s) 53, 56, 89, 435, 509, 618, 865, 1025
BlnI CCTAGG 1 cut(s) 1147
BlsI GCNGC 8 cut(s) 54, 57, 90, 436, 510, 619, 866, 1026
BmcAI AGTACT 2 cut(s) 460, 491
Bme1390I CCNGG 6 cut(s) 551, 604, 784, 972, 1064, 1264
Bme18I GGWCC 1 cut(s) 786
BmgT120I GGNCC 2 cut(s) 705, 786
BmiI GGNNCC 2 cut(s) 7, 829
BmrFI CCNGG 6 cut(s) 551, 604, 784, 972, 1064, 1264
BmrI ACTGGG 1 cut(s) 862
BmsI GCATC 4 cut(s) 229, 331, 1106, 1213
BmuI ACTGGG 1 cut(s) 862
BpiI GAAGAC 2 cut(s) 693, 770
BplI GAGNNNNNCTC 2 cut(s) 1294, 1326
BpmI CTGGAG 1 cut(s) 284
BpuMI CCSGG 2 cut(s) 972, 1264
BsaBI GATNNNNATC 3 cut(s) 225, 231, 1193
BsaI GGTCTC 1 cut(s) 904
BsaJI CCNNGG 6 cut(s) 137, 370, 865, 1124, 1147, 1263
BsaWI WCCGGW 1 cut(s) 641
BsaXI ACNNNNNCTCC 4 cut(s) 473, 503, 935, 965
Bsc4I CCNNNNNNNGG 5 cut(s) 371, 774, 971, 977, 1125
Bse118I RCCGGY 5 cut(s) 97, 511, 725, 954, 1358
Bse1I ACTGG 3 cut(s) 301, 451, 857
Bse8I GATNNNNATC 3 cut(s) 225, 231, 1193
BseBI CCWGG 4 cut(s) 551, 604, 784, 1064
BseDI CCNNGG 6 cut(s) 137, 370, 865, 1124, 1147, 1263
BseGI GGATG 3 cut(s) 365, 596, 1273
BseJI GATNNNNATC 3 cut(s) 225, 231, 1193
BseLI CCNNNNNNNGG 5 cut(s) 371, 774, 971, 977, 1125
BseMII CTCAG 2 cut(s) 1019, 1157
BseNI ACTGG 3 cut(s) 301, 451, 857
BseRI GAGGAG 4 cut(s) 274, 287, 959, 1302
BseX3I CGGCCG 1 cut(s) 509
BseXI GCAGC 4 cut(s) 67, 75, 446, 629
BseYI CCCAGC 2 cut(s) 1349, 1354
Bsh1236I CGCG 3 cut(s) 679, 867, 1126
Bsh1285I CGRYCG 1 cut(s) 512
BshFI GGCC 4 cut(s) 511, 549, 707, 725
BsiEI CGRYCG 1 cut(s) 512
BsiSI CCGG 8 cut(s) 98, 512, 642, 726, 955, 971, 1263, 1359
BslFI GGGAC 3 cut(s) 91, 277, 1331
BslI CCNNNNNNNGG 5 cut(s) 371, 774, 971, 977, 1125
BsmAI GTCTC 3 cut(s) 904, 941, 969
BsmBI CGTCTC 2 cut(s) 941, 969
BsmFI GGGAC 3 cut(s) 91, 277, 1331
BsnI GGCC 4 cut(s) 511, 549, 707, 725
Bso31I GGTCTC 1 cut(s) 904
Bsp1286I GDGCHC 1 cut(s) 847
Bsp1407I TGTACA 2 cut(s) 1270, 1293
Bsp143I GATC 6 cut(s) 16, 46, 220, 226, 232, 880
Bsp19I CCATGG 1 cut(s) 137
BspANI GGCC 4 cut(s) 511, 549, 707, 725
BspCNI CTCAG 2 cut(s) 1020, 1158
BspFNI CGCG 3 cut(s) 679, 867, 1126
BspHI TCATGA 2 cut(s) 229, 235
BspLI GGNNCC 2 cut(s) 7, 829
BspMI ACCTGC 1 cut(s) 598
BspPI GGATC 1 cut(s) 24
BspTNI GGTCTC 1 cut(s) 904
BsrBI CCGCTC 1 cut(s) 192
BsrFI RCCGGY 5 cut(s) 97, 511, 725, 954, 1358
BsrGI TGTACA 2 cut(s) 1270, 1293
BsrI ACTGG 3 cut(s) 301, 451, 857
BssAI RCCGGY 5 cut(s) 97, 511, 725, 954, 1358
BssECI CCNNGG 6 cut(s) 137, 370, 865, 1124, 1147, 1263
BssMI GATC 6 cut(s) 16, 46, 220, 226, 232, 880
BssT1I CCWWGG 2 cut(s) 137, 1147
Bst2UI CCWGG 4 cut(s) 551, 604, 784, 1064
Bst4CI ACNGT 2 cut(s) 380, 813
Bst6I CTCTTC 1 cut(s) 1282
BstAUI TGTACA 2 cut(s) 1270, 1293
BstC8I GCNNGC 5 cut(s) 134, 144, 439, 727, 1360
BstDEI CTNAG 2 cut(s) 1028, 1166
BstDSI CCRYGG 4 cut(s) 137, 370, 865, 1124
BstF5I GGATG 3 cut(s) 365, 596, 1273
BstFNI CGCG 3 cut(s) 679, 867, 1126
BstHHI GCGC 1 cut(s) 681
BstKTI GATC 6 cut(s) 19, 49, 223, 229, 235, 883
BstMAI GTCTC 3 cut(s) 904, 941, 969
BstMBI GATC 6 cut(s) 16, 46, 220, 226, 232, 880
BstMCI CGRYCG 1 cut(s) 512
BstMWI GCNNNNNNNGC 5 cut(s) 94, 434, 1033, 1259, 1359
BstNI CCWGG 4 cut(s) 551, 604, 784, 1064
BstSCI CCNGG 6 cut(s) 549, 602, 782, 970, 1062, 1262
BstUI CGCG 3 cut(s) 679, 867, 1126
BstV1I GCAGC 4 cut(s) 67, 75, 446, 629
BstV2I GAAGAC 2 cut(s) 693, 770
BstZI CGGCCG 1 cut(s) 509
BsuRI GGCC 4 cut(s) 511, 549, 707, 725
BtgI CCRYGG 4 cut(s) 137, 370, 865, 1124
BtsCI GGATG 3 cut(s) 365, 596, 1273
BtsIMutI CAGTG 1 cut(s) 850
BveI ACCTGC 1 cut(s) 598
Cac8I GCNNGC 5 cut(s) 134, 144, 439, 727, 1360
CciI TCATGA 2 cut(s) 229, 235
CfoI GCGC 1 cut(s) 681
Cfr10I RCCGGY 5 cut(s) 97, 511, 725, 954, 1358
Cfr13I GGNCC 2 cut(s) 705, 786
Cfr42I CCGCGG 2 cut(s) 868, 1127
CsiI ACCWGGT 1 cut(s) 1062
Csp6I GTAC 6 cut(s) 459, 490, 952, 1084, 1271, 1294
CspCI CAANNNNNGTGG 6 cut(s) 319, 354, 453, 488, 727, 762
CviQI GTAC 6 cut(s) 459, 490, 952, 1084, 1271, 1294
DdeI CTNAG 2 cut(s) 1028, 1166
DpnI GATC 6 cut(s) 18, 48, 222, 228, 234, 882
DpnII GATC 6 cut(s) 16, 46, 220, 226, 232, 880
EaeI YGGCCR 1 cut(s) 509
EagI CGGCCG 1 cut(s) 509
Eam1104I CTCTTC 1 cut(s) 1282
EarI CTCTTC 1 cut(s) 1282
EciI GGCGGA 4 cut(s) 494, 851, 1344, 1356
EclXI CGGCCG 1 cut(s) 509
Eco130I CCWWGG 2 cut(s) 137, 1147
Eco24I GRGCYC 1 cut(s) 847
Eco31I GGTCTC 1 cut(s) 904
Eco47I GGWCC 1 cut(s) 786
Eco52I CGGCCG 1 cut(s) 509
EcoRII CCWGG 4 cut(s) 549, 602, 782, 1062
EcoT14I CCWWGG 2 cut(s) 137, 1147
EcoT22I ATGCAT 1 cut(s) 33
EcoT38I GRGCYC 1 cut(s) 847
ErhI CCWWGG 2 cut(s) 137, 1147
Esp3I CGTCTC 2 cut(s) 941, 969
FalI AAGNNNNNCTT 2 cut(s) 638, 670
FaqI GGGAC 3 cut(s) 91, 277, 1331
FauI CCCGC 1 cut(s) 355
FbaI TGATCA 4 cut(s) 46, 226, 232, 880
Fnu4HI GCNGC 8 cut(s) 53, 56, 89, 435, 509, 618, 865, 1025
FokI GGATG 3 cut(s) 352, 583, 1280
FriOI GRGCYC 1 cut(s) 847
Fsp4HI GCNGC 8 cut(s) 53, 56, 89, 435, 509, 618, 865, 1025
FspBI CTAG 4 cut(s) 395, 1148, 1217, 1386
GlaI GCGC 1 cut(s) 680
GluI GCNGC 8 cut(s) 53, 56, 89, 435, 509, 618, 865, 1025
GsaI CCCAGC 2 cut(s) 1353, 1358
GsuI CTGGAG 1 cut(s) 284
HaeIII GGCC 4 cut(s) 511, 549, 707, 725
HapII CCGG 8 cut(s) 98, 512, 642, 726, 955, 971, 1263, 1359
HhaI GCGC 1 cut(s) 681
Hin6I GCGC 1 cut(s) 679
HinP1I GCGC 1 cut(s) 679
HincII GTYRAC 1 cut(s) 568
HindII GTYRAC 1 cut(s) 568
HindIII AAGCTT 1 cut(s) 885
HinfI GANTC 5 cut(s) 273, 569, 674, 1136, 1189
HpaII CCGG 8 cut(s) 98, 512, 642, 726, 955, 971, 1263, 1359
HphI GGTGA 3 cut(s) 112, 392, 911
Hpy166II GTNNAC 3 cut(s) 310, 568, 1273
Hpy188III TCNNGA 3 cut(s) 224, 230, 236
Hpy8I GTNNAC 3 cut(s) 310, 568, 1273
Hpy99I CGWCG 1 cut(s) 380
HpyAV CCTTC 2 cut(s) 119, 418
HpyCH4III ACNGT 2 cut(s) 380, 813
HpyCH4IV ACGT 1 cut(s) 950
HpyCH4V TGCA 6 cut(s) 31, 91, 132, 344, 617, 1204
HpyF10VI GCNNNNNNNGC 5 cut(s) 94, 434, 1033, 1259, 1359
HpyF3I CTNAG 2 cut(s) 1028, 1166
HpySE526I ACGT 1 cut(s) 950
HspAI GCGC 1 cut(s) 679
KroI GCCGGC 2 cut(s) 725, 1358
KroNI GCCGGC 2 cut(s) 727, 1360
Ksp22I TGATCA 4 cut(s) 46, 226, 232, 880
KspI CCGCGG 2 cut(s) 868, 1127
Kzo9I GATC 6 cut(s) 16, 46, 220, 226, 232, 880
LmnI GCTCC 2 cut(s) 481, 1315
Lsp1109I GCAGC 4 cut(s) 67, 75, 446, 629
LweI GCATC 4 cut(s) 229, 331, 1106, 1213
MabI ACCWGGT 1 cut(s) 1062
MaeI CTAG 4 cut(s) 395, 1148, 1217, 1386
MaeII ACGT 1 cut(s) 950
MaeIII GTNAC 5 cut(s) 174, 542, 668, 899, 1158
MalI GATC 6 cut(s) 18, 48, 222, 228, 234, 882
MbiI CCGCTC 1 cut(s) 192
MboI GATC 6 cut(s) 16, 46, 220, 226, 232, 880
MboII GAAGA 9 cut(s) 104, 538, 587, 698, 705, 775, 1141, 1189, 1269
MhlI GDGCHC 1 cut(s) 847
MluCI AATT 3 cut(s) 81, 988, 1403
MlyI GAGTC 2 cut(s) 267, 563
MmeI TCCRAC 3 cut(s) 180, 805, 1406
Mph1103I ATGCAT 1 cut(s) 33
MroNI GCCGGC 2 cut(s) 725, 1358
MseI TTAA 1 cut(s) 1073
MslI CAYNNNNRTG 1 cut(s) 234
MspA1I CMGCKG 4 cut(s) 52, 437, 867, 1126
MspI CCGG 8 cut(s) 98, 512, 642, 726, 955, 971, 1263, 1359
MspR9I CCNGG 6 cut(s) 551, 604, 784, 972, 1064, 1264
MvaI CCWGG 4 cut(s) 551, 604, 784, 1064
MvnI CGCG 3 cut(s) 679, 867, 1126
MwoI GCNNNNNNNGC 5 cut(s) 94, 434, 1033, 1259, 1359
NaeI GCCGGC 2 cut(s) 727, 1360
NciI CCSGG 2 cut(s) 972, 1264
NcoI CCATGG 1 cut(s) 137
NdeII GATC 6 cut(s) 16, 46, 220, 226, 232, 880
NgoMIV GCCGGC 2 cut(s) 725, 1358
NlaIV GGNNCC 2 cut(s) 7, 829
NmuCI GTSAC 3 cut(s) 174, 899, 1158
NsiI ATGCAT 1 cut(s) 33
PagI TCATGA 2 cut(s) 229, 235
PcsI WCGNNNNNNNCGW 1 cut(s) 930
PdiI GCCGGC 2 cut(s) 727, 1360
PfeI GAWTC 3 cut(s) 674, 1136, 1189
PflMI CCANNNNNTGG 2 cut(s) 371, 774
PkrI GCNGC 8 cut(s) 54, 57, 90, 436, 510, 619, 866, 1026
PleI GAGTC 2 cut(s) 267, 563
PpsI GAGTC 2 cut(s) 267, 563
PsiI TTATAA 1 cut(s) 591
Psp6I CCWGG 4 cut(s) 549, 602, 782, 1062
PspFI CCCAGC 2 cut(s) 1349, 1354
PspGI CCWGG 4 cut(s) 549, 602, 782, 1062
PspN4I GGNNCC 2 cut(s) 7, 829
PspPI GGNCC 2 cut(s) 705, 786
PvuII CAGCTG 1 cut(s) 437
RsaI GTAC 6 cut(s) 460, 491, 953, 1085, 1272, 1295
RsaNI GTAC 6 cut(s) 459, 490, 952, 1084, 1271, 1294
RseI CAYNNNNRTG 1 cut(s) 234
SacII CCGCGG 2 cut(s) 868, 1127
SaqAI TTAA 1 cut(s) 1073
SatI GCNGC 8 cut(s) 53, 56, 89, 435, 509, 618, 865, 1025
Sau3AI GATC 6 cut(s) 16, 46, 220, 226, 232, 880
Sau96I GGNCC 2 cut(s) 705, 786
ScaI AGTACT 2 cut(s) 460, 491
SchI GAGTC 2 cut(s) 267, 563
ScrFI CCNGG 6 cut(s) 551, 604, 784, 972, 1064, 1264
SduI GDGCHC 1 cut(s) 847
SexAI ACCWGGT 1 cut(s) 1062
SfaNI GCATC 4 cut(s) 229, 331, 1106, 1213
Sfr303I CCGCGG 2 cut(s) 868, 1127
SgrBI CCGCGG 2 cut(s) 868, 1127
SinI GGWCC 1 cut(s) 786
SmiMI CAYNNNNRTG 1 cut(s) 234
SpeI ACTAGT 2 cut(s) 1216, 1385
Sse9I AATT 3 cut(s) 81, 988, 1403
SspMI CTAG 4 cut(s) 395, 1148, 1217, 1386
StyD4I CCNGG 6 cut(s) 549, 602, 782, 970, 1062, 1262
StyI CCWWGG 2 cut(s) 137, 1147
TaaI ACNGT 2 cut(s) 380, 813
TaiI ACGT 1 cut(s) 953
TaqI TCGA 1 cut(s) 933
TasI AATT 3 cut(s) 81, 988, 1403
TatI WGTACW 4 cut(s) 458, 489, 1270, 1293
TauI GCSGC 4 cut(s) 55, 511, 867, 1027
TfiI GAWTC 3 cut(s) 674, 1136, 1189
Tru1I TTAA 1 cut(s) 1073
Tru9I TTAA 1 cut(s) 1073
TscAI CASTG 1 cut(s) 857
TseFI GTSAC 3 cut(s) 174, 899, 1158
TseI GCWGC 4 cut(s) 55, 88, 434, 617
Tsp45I GTSAC 3 cut(s) 174, 899, 1158
TspDTI ATGAA 4 cut(s) 51, 539, 602, 1091
TspGWI ACGGA 1 cut(s) 295
TspRI CASTG 1 cut(s) 857
Van91I CCANNNNNTGG 2 cut(s) 371, 774
VpaK11BI GGWCC 1 cut(s) 786
XapI RAATTY 2 cut(s) 81, 988
XmaJI CCTAGG 1 cut(s) 1147
XspI CTAG 4 cut(s) 395, 1148, 1217, 1386
ZrmI AGTACT 2 cut(s) 460, 491
Zsp2I ATGCAT 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.