Rmu_sc0004001.1_g000015

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004001.1
OG0000113
Physical Location & Seq
Reverse (-)
33068 .. 33499
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004001.1_g000015.1.cds

Sequence Viewer

Length: 432 bp
atgtcatggtcaggtctcttcgcactttgcggatttggttttaatgccactatgaggttttgcggatttggttatgattccactaatgatgattacaaggtagtgagagggtacaatcatagagttaggggttctgagcaaactgtggttcaagtctctagtttaaaatcaggttcatggaggacccatgagggtctcggttacttttgcttggcagggccagggtgcttgttaaatggtgctttgccttggccagggaccatattcaatgatttttgtccaccagatttaagggctatctctttttatttagcagaggaaaagtttcaggagatgagcataacaagcttttcaaacatctcagctttaagatggactgcttgctccaacatccattctttaaaattcaagttgggcagtatagacgtatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

143

Amino Acids

15.88

Weight (kDa)

7.61

Isoelectric Point (pI)

39.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 30, 63
AcoI YGGCCR 1 cut(s) 251
AcsI RAATTY 1 cut(s) 404
AfaI GTAC 1 cut(s) 113
AfiI CCNNNNNNNGG 2 cut(s) 54, 254
AgsI TTSAA 4 cut(s) 152, 268, 354, 409
AjnI CCWGG 2 cut(s) 220, 253
AluBI AGCT 2 cut(s) 348, 365
AluI AGCT 2 cut(s) 348, 365
Alw26I GTCTC 3 cut(s) 20, 160, 200
AoxI GGCC 2 cut(s) 218, 251
ApoI RAATTY 1 cut(s) 404
Asp700I GAANNNNTTC 1 cut(s) 324
AspS9I GGNCC 3 cut(s) 183, 218, 258
AvaII GGWCC 2 cut(s) 183, 258
BalI TGGCCA 1 cut(s) 253
BccI CCATC 1 cut(s) 366
BciT130I CCWGG 2 cut(s) 222, 255
BcoDI GTCTC 3 cut(s) 20, 160, 200
BfaI CTAG 1 cut(s) 159
Bme1390I CCNGG 2 cut(s) 222, 255
Bme18I GGWCC 2 cut(s) 183, 258
BmgT120I GGNCC 3 cut(s) 183, 218, 258
BmiI GGNNCC 2 cut(s) 185, 259
BmrFI CCNGG 2 cut(s) 222, 255
BsaI GGTCTC 2 cut(s) 20, 200
BsaJI CCNNGG 3 cut(s) 221, 248, 254
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 254
BseBI CCWGG 2 cut(s) 222, 255
BseDI CCNNGG 3 cut(s) 221, 248, 254
BseGI GGATG 1 cut(s) 390
BseLI CCNNNNNNNGG 2 cut(s) 54, 254
BseMII CTCAG 2 cut(s) 126, 375
BshFI GGCC 2 cut(s) 220, 253
BslFI GGGAC 1 cut(s) 271
BslI CCNNNNNNNGG 2 cut(s) 54, 254
BsmAI GTCTC 3 cut(s) 20, 160, 200
BsmFI GGGAC 1 cut(s) 271
BsnI GGCC 2 cut(s) 220, 253
Bso31I GGTCTC 2 cut(s) 20, 200
BspACI CCGC 2 cut(s) 30, 63
BspANI GGCC 2 cut(s) 220, 253
BspCNI CTCAG 2 cut(s) 127, 374
BspLI GGNNCC 2 cut(s) 185, 259
BspTNI GGTCTC 2 cut(s) 20, 200
BssECI CCNNGG 3 cut(s) 221, 248, 254
BssT1I CCWWGG 1 cut(s) 248
Bst2UI CCWGG 2 cut(s) 222, 255
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 382
BstDEI CTNAG 2 cut(s) 135, 361
BstENI CCTNNNNNAGG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 390
BstMAI GTCTC 3 cut(s) 20, 160, 200
BstMWI GCNNNNNNNGC 1 cut(s) 345
BstNI CCWGG 2 cut(s) 222, 255
BstSCI CCNGG 2 cut(s) 220, 253
BsuRI GGCC 2 cut(s) 220, 253
BtsCI GGATG 1 cut(s) 390
Cac8I GCNNGC 1 cut(s) 382
Cfr13I GGNCC 3 cut(s) 183, 218, 258
Csp6I GTAC 1 cut(s) 112
CviAII CATG 3 cut(s) 6, 177, 188
CviJI RGCY 5 cut(s) 220, 253, 296, 348, 365
CviKI_1 RGCY 5 cut(s) 220, 253, 296, 348, 365
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 2 cut(s) 135, 361
DraI TTTAAA 2 cut(s) 165, 402
EaeI YGGCCR 1 cut(s) 251
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Eco130I CCWWGG 1 cut(s) 248
Eco31I GGTCTC 2 cut(s) 20, 200
Eco47I GGWCC 2 cut(s) 183, 258
EcoNI CCTNNNNNAGG 1 cut(s) 252
EcoO109I RGGNCCY 1 cut(s) 183
EcoRII CCWGG 2 cut(s) 220, 253
EcoT14I CCWWGG 1 cut(s) 248
ErhI CCWWGG 1 cut(s) 248
FaeI CATG 3 cut(s) 9, 180, 191
FaqI GGGAC 1 cut(s) 271
FatI CATG 3 cut(s) 5, 176, 187
FokI GGATG 1 cut(s) 377
FspBI CTAG 1 cut(s) 159
HaeIII GGCC 2 cut(s) 220, 253
Hin1II CATG 3 cut(s) 9, 180, 191
HindIII AAGCTT 1 cut(s) 346
HinfI GANTC 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 281
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 1 cut(s) 329
Hpy8I GTNNAC 1 cut(s) 281
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 426
HpyF10VI GCNNNNNNNGC 1 cut(s) 345
HpyF3I CTNAG 2 cut(s) 135, 361
HpySE526I ACGT 1 cut(s) 426
Hsp92II CATG 3 cut(s) 9, 180, 191
LmnI GCTCC 1 cut(s) 389
LpnPI CCDG 8 cut(s) 156, 201, 207, 234, 240, 267, 297, 314
MaeI CTAG 1 cut(s) 159
MaeII ACGT 1 cut(s) 426
MaeIII GTNAC 1 cut(s) 200
MboII GAAGA 1 cut(s) 10
MlsI TGGCCA 1 cut(s) 253
MluCI AATT 1 cut(s) 404
MluNI TGGCCA 1 cut(s) 253
MmeI TCCRAC 1 cut(s) 411
MnlI CCTC 5 cut(s) 48, 101, 174, 184, 310
Mox20I TGGCCA 1 cut(s) 253
MroXI GAANNNNTTC 1 cut(s) 324
MscI TGGCCA 1 cut(s) 253
MseI TTAA 6 cut(s) 42, 164, 233, 290, 368, 401
Msp20I TGGCCA 1 cut(s) 253
MspR9I CCNGG 2 cut(s) 222, 255
MvaI CCWGG 2 cut(s) 222, 255
MwoI GCNNNNNNNGC 1 cut(s) 345
NlaIII CATG 3 cut(s) 9, 180, 191
NlaIV GGNNCC 2 cut(s) 185, 259
PdmI GAANNNNTTC 1 cut(s) 324
PfeI GAWTC 1 cut(s) 77
PpuMI RGGWCCY 1 cut(s) 183
Psp5II RGGWCCY 1 cut(s) 183
Psp6I CCWGG 2 cut(s) 220, 253
PspGI CCWGG 2 cut(s) 220, 253
PspN4I GGNNCC 2 cut(s) 185, 259
PspPI GGNCC 3 cut(s) 183, 218, 258
PspPPI RGGWCCY 1 cut(s) 183
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SaqAI TTAA 6 cut(s) 42, 164, 233, 290, 368, 401
Sau96I GGNCC 3 cut(s) 183, 218, 258
ScrFI CCNGG 2 cut(s) 222, 255
SetI ASST 7 cut(s) 16, 59, 102, 175, 350, 367, 429
SinI GGWCC 2 cut(s) 183, 258
Sse9I AATT 1 cut(s) 404
SsiI CCGC 2 cut(s) 30, 63
SspMI CTAG 1 cut(s) 159
StyD4I CCNGG 2 cut(s) 220, 253
StyI CCWWGG 1 cut(s) 248
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 1 cut(s) 429
TasI AATT 1 cut(s) 404
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 6 cut(s) 42, 164, 233, 290, 368, 401
Tru9I TTAA 6 cut(s) 42, 164, 233, 290, 368, 401
TspDTI ATGAA 1 cut(s) 165
VpaK11BI GGWCC 2 cut(s) 183, 258
XagI CCTNNNNNAGG 1 cut(s) 252
XapI RAATTY 1 cut(s) 404
XmnI GAANNNNTTC 1 cut(s) 324
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.