RLG00000020797

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
68875246 .. 68877328
2083 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020797

Sequence Viewer

Length: 582 bp
ATGTCCGACGCGCTCTCCATTCGCCGGCAACGCCAACTGGTTCTCTCCGGCACCGGACCTGGCCCCGAGTCTTTCGATGCCATCATTATCGAGATCCTCTCATGGCGGGCACTGATCTCCCAGTCTTATTTCATCAAGAAGCACCTCATCCGCACCAAAATCAACACCAGCTTCAAGCTTCTCGTCAAGGAGAGTTACGTATTCAGGTCCATAGAGTACCAAGCGTTATTAAACTGTTTAAGTGATGATGGTACTATTCCCCACAGAGAGCTTGATTTTCCGGAAATCAATCAACCAATGTTTGAATTTCTTTATATGCGGATAATTGGTGCTTGCAATGGCCTCATATGTCTACTACTAGACTGCGAAACTTCAACCATTTTGTTATGGAACCCTTGTACTAGAGACTCCCAGGTATTACCACAACCTCCTATTATTCATAGAGACCTACGGTTCTTCGGATTCGGTTATGATTCCACTACTGATGATTACAAGGTAGTACTGGGTTGTTGGAATTCTAGTTATGAATCTTTGTCTGTGGAGTTACTTGATCCCAAATTTGCCAGAACTGACTTGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

194

Amino Acids

22.18

Weight (kDa)

5.38

Isoelectric Point (pI)

52.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 104 - 174 1.6e-08 F-box associated beta propeller domain
FBA_1 PF07734 106 - 170 2e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 50
AccI GTMKAC 1 cut(s) 352
AccII CGCG 1 cut(s) 11
AccIII TCCGGA 1 cut(s) 280
AciI CCGC 3 cut(s) 106, 151, 319
AclWI GGATC 2 cut(s) 88, 545
AcsI RAATTY 3 cut(s) 305, 514, 557
AfaI GTAC 4 cut(s) 218, 253, 400, 501
AfiI CCNNNNNNNGG 1 cut(s) 24
AgsI TTSAA 3 cut(s) 175, 305, 375
AjnI CCWGG 2 cut(s) 58, 411
AluBI AGCT 3 cut(s) 171, 178, 271
AluI AGCT 3 cut(s) 171, 178, 271
Alw26I GTCTC 2 cut(s) 399, 438
AlwI GGATC 2 cut(s) 88, 545
Ama87I CYCGRG 1 cut(s) 65
Aor13HI TCCGGA 1 cut(s) 280
AoxI GGCC 2 cut(s) 61, 340
ApoI RAATTY 3 cut(s) 305, 514, 557
AspLEI GCGC 1 cut(s) 13
AspS9I GGNCC 3 cut(s) 56, 62, 207
AvaI CYCGRG 1 cut(s) 65
AvaII GGWCC 2 cut(s) 56, 207
BaeGI GKGCMC 1 cut(s) 112
BanI GGYRCC 1 cut(s) 50
BccI CCATC 2 cut(s) 89, 242
BciT130I CCWGG 2 cut(s) 60, 413
BcoDI GTCTC 2 cut(s) 399, 438
BfaI CTAG 3 cut(s) 359, 402, 519
BfmI CTRYAG 1 cut(s) 578
BmcAI AGTACT 1 cut(s) 501
Bme1390I CCNGG 2 cut(s) 60, 413
Bme18I GGWCC 2 cut(s) 56, 207
BmeT110I CYCGRG 1 cut(s) 65
BmgT120I GGNCC 3 cut(s) 56, 62, 207
BmiI GGNNCC 3 cut(s) 52, 64, 392
BmrFI CCNGG 2 cut(s) 60, 413
BmrI ACTGGG 2 cut(s) 115, 512
BmsI GCATC 1 cut(s) 67
BmuI ACTGGG 2 cut(s) 115, 512
BplI GAGNNNNNCTC 2 cut(s) 83, 115
BsaAI YACGTR 1 cut(s) 199
BsaI GGTCTC 1 cut(s) 438
BsaJI CCNNGG 1 cut(s) 411
BsaWI WCCGGW 2 cut(s) 53, 280
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 24
Bse118I RCCGGY 1 cut(s) 24
Bse1I ACTGG 3 cut(s) 42, 121, 507
Bse3DI GCAATG 1 cut(s) 343
BseAI TCCGGA 1 cut(s) 280
BseBI CCWGG 2 cut(s) 60, 413
BseDI CCNNGG 1 cut(s) 411
BseGI GGATG 1 cut(s) 147
BseLI CCNNNNNNNGG 1 cut(s) 24
BseMI GCAATG 1 cut(s) 343
BseNI ACTGG 3 cut(s) 42, 121, 507
BseSI GKGCMC 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 2 cut(s) 63, 342
BshNI GGYRCC 1 cut(s) 50
BsiHKCI CYCGRG 1 cut(s) 65
BsiSI CCGG 4 cut(s) 25, 48, 54, 281
BslI CCNNNNNNNGG 1 cut(s) 24
BsmAI GTCTC 2 cut(s) 399, 438
BsnI GGCC 2 cut(s) 63, 342
Bso31I GGTCTC 1 cut(s) 438
BsoBI CYCGRG 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 112
Bsp13I TCCGGA 1 cut(s) 280
Bsp143I GATC 3 cut(s) 93, 114, 550
BspACI CCGC 3 cut(s) 106, 151, 319
BspANI GGCC 2 cut(s) 63, 342
BspEI TCCGGA 1 cut(s) 280
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 3 cut(s) 52, 64, 392
BspPI GGATC 2 cut(s) 88, 545
BspT107I GGYRCC 1 cut(s) 50
BspTNI GGTCTC 1 cut(s) 438
BsrDI GCAATG 1 cut(s) 343
BsrFI RCCGGY 1 cut(s) 24
BsrI ACTGG 3 cut(s) 42, 121, 507
BssAI RCCGGY 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 411
BssMI GATC 3 cut(s) 93, 114, 550
Bst2UI CCWGG 2 cut(s) 60, 413
Bst4CI ACNGT 2 cut(s) 236, 453
BstBAI YACGTR 1 cut(s) 199
BstC8I GCNNGC 3 cut(s) 26, 108, 334
BstF5I GGATG 1 cut(s) 147
BstFNI CGCG 1 cut(s) 11
BstHHI GCGC 1 cut(s) 13
BstKTI GATC 3 cut(s) 96, 117, 553
BstMAI GTCTC 2 cut(s) 399, 438
BstMBI GATC 3 cut(s) 93, 114, 550
BstMWI GCNNNNNNNGC 1 cut(s) 30
BstNI CCWGG 2 cut(s) 60, 413
BstSCI CCNGG 2 cut(s) 58, 411
BstSFI CTRYAG 1 cut(s) 578
BstSLI GKGCMC 1 cut(s) 112
BstSNI TACGTA 1 cut(s) 199
BstUI CGCG 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
BsuRI GGCC 2 cut(s) 63, 342
BtsCI GGATG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 110
Cac8I GCNNGC 3 cut(s) 26, 108, 334
CfoI GCGC 1 cut(s) 13
Cfr10I RCCGGY 1 cut(s) 24
Cfr13I GGNCC 3 cut(s) 56, 62, 207
CseI GACGC 1 cut(s) 17
Csp6I GTAC 4 cut(s) 217, 252, 399, 500
CviAII CATG 1 cut(s) 102
CviJI RGCY 5 cut(s) 63, 171, 178, 271, 342
CviKI_1 RGCY 5 cut(s) 63, 171, 178, 271, 342
CviQI GTAC 4 cut(s) 217, 252, 399, 500
DpnI GATC 3 cut(s) 95, 116, 552
DpnII GATC 3 cut(s) 93, 114, 550
Eco105I TACGTA 1 cut(s) 199
Eco31I GGTCTC 1 cut(s) 438
Eco47I GGWCC 2 cut(s) 56, 207
Eco88I CYCGRG 1 cut(s) 65
EcoRI GAATTC 1 cut(s) 514
EcoRII CCWGG 2 cut(s) 58, 411
FaeI CATG 1 cut(s) 105
FatI CATG 1 cut(s) 101
FauI CCCGC 1 cut(s) 99
FauNDI CATATG 1 cut(s) 347
FblI GTMKAC 1 cut(s) 352
FokI GGATG 1 cut(s) 134
FspBI CTAG 3 cut(s) 359, 402, 519
GlaI GCGC 1 cut(s) 12
HaeIII GGCC 2 cut(s) 63, 342
HapII CCGG 4 cut(s) 25, 48, 54, 281
HgaI GACGC 1 cut(s) 17
HhaI GCGC 1 cut(s) 13
Hin1II CATG 1 cut(s) 105
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 5 cut(s) 68, 407, 462, 473, 527
HpaII CCGG 4 cut(s) 25, 48, 54, 281
Hpy166II GTNNAC 1 cut(s) 353
Hpy188I TCNGA 2 cut(s) 7, 461
Hpy188III TCNNGA 3 cut(s) 91, 136, 281
Hpy8I GTNNAC 1 cut(s) 353
Hpy99I CGWCG 1 cut(s) 11
HpyCH4III ACNGT 2 cut(s) 236, 453
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 1 cut(s) 336
HpyF10VI GCNNNNNNNGC 1 cut(s) 30
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 1 cut(s) 105
HspAI GCGC 1 cut(s) 11
Kpn2I TCCGGA 1 cut(s) 280
KroI GCCGGC 1 cut(s) 24
KroNI GCCGGC 1 cut(s) 26
Kzo9I GATC 3 cut(s) 93, 114, 550
LweI GCATC 1 cut(s) 67
MaeI CTAG 3 cut(s) 359, 402, 519
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 2 cut(s) 194, 543
MalI GATC 3 cut(s) 95, 116, 552
MboI GATC 3 cut(s) 93, 114, 550
MboII GAAGA 1 cut(s) 448
MflI RGATCY 1 cut(s) 93
MhlI GDGCHC 1 cut(s) 112
MluCI AATT 4 cut(s) 305, 324, 514, 557
MlyI GAGTC 2 cut(s) 77, 401
MmeI TCCRAC 2 cut(s) 30, 491
MnlI CCTC 4 cut(s) 107, 155, 353, 438
MroI TCCGGA 1 cut(s) 280
MroNI GCCGGC 1 cut(s) 24
MseI TTAA 2 cut(s) 230, 239
MspI CCGG 4 cut(s) 25, 48, 54, 281
MspR9I CCNGG 2 cut(s) 60, 413
MvaI CCWGG 2 cut(s) 60, 413
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 30
NaeI GCCGGC 1 cut(s) 26
NdeI CATATG 1 cut(s) 347
NdeII GATC 3 cut(s) 93, 114, 550
NgoMIV GCCGGC 1 cut(s) 24
NlaIII CATG 1 cut(s) 105
NlaIV GGNNCC 3 cut(s) 52, 64, 392
PdiI GCCGGC 1 cut(s) 26
PfeI GAWTC 3 cut(s) 462, 473, 527
PleI GAGTC 2 cut(s) 76, 401
PpsI GAGTC 2 cut(s) 76, 401
Ppu21I YACGTR 1 cut(s) 199
Psp6I CCWGG 2 cut(s) 58, 411
PspGI CCWGG 2 cut(s) 58, 411
PspN4I GGNNCC 3 cut(s) 52, 64, 392
PspPI GGNCC 3 cut(s) 56, 62, 207
PsuI RGATCY 1 cut(s) 93
RsaI GTAC 4 cut(s) 218, 253, 400, 501
RsaNI GTAC 4 cut(s) 217, 252, 399, 500
SaqAI TTAA 2 cut(s) 230, 239
Sau3AI GATC 3 cut(s) 93, 114, 550
Sau96I GGNCC 3 cut(s) 56, 62, 207
ScaI AGTACT 1 cut(s) 501
SchI GAGTC 2 cut(s) 77, 401
ScrFI CCNGG 2 cut(s) 60, 413
SduI GDGCHC 1 cut(s) 112
SfaNI GCATC 1 cut(s) 67
SfcI CTRYAG 1 cut(s) 578
SinI GGWCC 2 cut(s) 56, 207
SnaBI TACGTA 1 cut(s) 199
Sse9I AATT 4 cut(s) 305, 324, 514, 557
SsiI CCGC 3 cut(s) 106, 151, 319
SspMI CTAG 3 cut(s) 359, 402, 519
StyD4I CCNGG 2 cut(s) 58, 411
TaaI ACNGT 2 cut(s) 236, 453
TaiI ACGT 1 cut(s) 201
TaqI TCGA 2 cut(s) 75, 90
TasI AATT 4 cut(s) 305, 324, 514, 557
TatI WGTACW 2 cut(s) 398, 499
TfiI GAWTC 3 cut(s) 462, 473, 527
Tru1I TTAA 2 cut(s) 230, 239
Tru9I TTAA 2 cut(s) 230, 239
TscAI CASTG 1 cut(s) 117
TspDTI ATGAA 3 cut(s) 121, 428, 540
TspRI CASTG 1 cut(s) 117
VpaK11BI GGWCC 2 cut(s) 56, 207
XapI RAATTY 3 cut(s) 305, 514, 557
XmiI GTMKAC 1 cut(s) 352
XspI CTAG 3 cut(s) 359, 402, 519
ZrmI AGTACT 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.