Rroxscaffold_2G00094130

The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012642
Physical Location & Seq
Forward (+)
15448300 .. 15453177
4878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00094130.1

Sequence Viewer

Length: 1593 bp
ATGGAGAATTCAGCTCCTGAGATTCAACATGGAGAGGAATCAGACTCTAACAAAACCCAGATTCATAATCAAGAGGAAAGAAATGAAGAAATTTCCCTGGTTCAACAGTCTCGAAGGCCAAACCTGTCCTCTTTGCAGATACCAGAGAGGACTCTGGAAAGTAGTTTGTCTGCTTTTACGATGATTGATATTCCGTCTGTACAAAGTCCTAGTTCTATTAGAGCTGGGCTGCCGCCTAGACCACATTCAGCTAAGATCAAATCATCCGTGAAATATCTGTTTCCTTCAAAGAGCATTAGGGCAAAAAATATAACCCATGATGGCGAGAAGGCCATTCTCATTCTACCAGATACAGCTTCATCAGATGCTCCTTTGGAAAAGCCTTCTACTTCGAGGTCTTTCTCACTTAATAGGATGTTCTTCTCTCCATCATTGAAAGCAACACATTCTTTACCAGTTACACCGACTGCAAATTCAGGTTCAGAGTCTGTGCAGGGAAGACAGTTGGAAGGTCATTCTGATTTATCTAAAATTGAAGTTGAGCAGCATATGACCCGCTCATTTTCAGTTCCAGTGAATGTTAAAACCAGAAGTTTAAGGCGGATGGATTCTGGAGGCATGATGCGTGTAATTACAACTCCACGTCCTGCAGTAGTTGATGCTGCTTCCCAAAATAGTGCCCCAGCAATGGAAACTGCTACCGAAGATCCTGGTGAGGATATTCCTGAAGAAGAAGCCGTTTGCCGAATTTGTTTGGTTGAGCTTGCAGAAGGTGGTGATACTCTTAAAATGGAGTGCAGCTGCAAAGGAGAGCTGGCACTGGCTCACAAAGAATGTGCAATAAAGTGGTTTACCATTAAAGGTAACAAGACCTGTGATGTCTGCAGACAGGATGTTCGAAACCTACATGTAACGCTACTCAAAATACACAATCCTCAAACTATTATTAGACGACCACCAACAATACCTGAGCAGAGGGAAGTTGCTCGATACAGGGTCTGGCAGGACATACCAGTTCTTGTTCTGGTCAGCATGCTTGCATATTTCTGCTTTCTGGAACAACTTCTGGTCTCTGACTTGGGCCCTCGTGCTCTTGCCATTTCCTTACCTTTCTCTTGCCTTTTAGGTCTCCTTTCATCCATGATTGCTTCAACAATGGTAAGCAGGAGCTACATATGGGCCTATGCCTCCTTCCAGTTTGCCATCGTGATCCTCTTTGCTCACATATTTTATACTATCCTTAATGTAAATCCAATTCTCTCGGTCATCCTTTCCTCATTTACTGGCTTCGGGATTGCGATCAGCACAAATTCTCTTCTAGTGGAGTATCTTAGATGGAAAGCAAGCAGGCAAGTGGGATCTTCCCATCAACATACTAGCACTATGAATGAACTGCAACTGCAGCACCAGCAGTGGCAGCATGAAGAGCAATATCATCGCCATTATCAGCAACAACGACGTCAACGATTGAGAGAAGGTTCCCAGAATCAGTTACAACAGCAAGAGCAAGAGCTCCAGCAGCAACAACAACAATTGAATGAAGATCCAAATGCGAATGGTTCCTTGCAGATAGACATTGGACGGGAGACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RINGv

Protein Analysis

530

Amino Acids

59.57

Weight (kDa)

6.64

Isoelectric Point (pI)

66.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RINGv PF12906 248 - 295 1e-12 RING-variant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1462
AccBSI CCGCTC 1 cut(s) 558
AciI CCGC 3 cut(s) 233, 556, 601
AclWI GGATC 4 cut(s) 701, 1204, 1366, 1538
AcsI RAATTY 5 cut(s) 7, 90, 472, 747, 1309
AcuI CTGAAG 1 cut(s) 747
AcyI GRCGYC 1 cut(s) 1459
AfaI GTAC 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 688
AflIII ACRYGT 1 cut(s) 907
AgsI TTSAA 7 cut(s) 26, 104, 288, 436, 536, 1152, 1537
AjiI CACGTC 1 cut(s) 644
AjnI CCWGG 2 cut(s) 96, 709
AluBI AGCT 9 cut(s) 14, 224, 251, 356, 763, 801, 814, 1170, 1513
AluI AGCT 9 cut(s) 14, 224, 251, 356, 763, 801, 814, 1170, 1513
Alw21I GWGCWC 2 cut(s) 1093, 1515
Alw26I GTCTC 4 cut(s) 114, 1075, 1133, 1580
AlwI GGATC 4 cut(s) 701, 1204, 1366, 1538
AlwNI CAGNNNCTG 3 cut(s) 17, 488, 999
AoxI GGCC 4 cut(s) 116, 330, 1081, 1179
ApaI GGGCCC 1 cut(s) 1085
ApeKI GCWGC 8 cut(s) 229, 544, 662, 798, 801, 1402, 1417, 1519
ApoI RAATTY 5 cut(s) 7, 90, 472, 747, 1309
ArsI GACNNNNNNTTYG 2 cut(s) 879, 911
Asp700I GAANNNNTTC 1 cut(s) 1062
AspS9I GGNCC 3 cut(s) 1081, 1082, 1179
AsuHPI GGTGA 2 cut(s) 725, 788
AsuII TTCGAA 1 cut(s) 898
BaeGI GKGCMC 2 cut(s) 682, 1085
BanII GRGCYC 2 cut(s) 1085, 1515
BauI CACGAG 1 cut(s) 1086
BbsI GAAGAC 1 cut(s) 505
Bbv12I GWGCWC 2 cut(s) 1093, 1515
BbvI GCAGC 8 cut(s) 216, 556, 649, 788, 810, 1414, 1429, 1531
BccI CCATC 6 cut(s) 314, 436, 598, 1211, 1329, 1374
BceAI ACGGC 1 cut(s) 722
BcgI CGANNNNNNTGC 2 cut(s) 1418, 1452
BciT130I CCWGG 2 cut(s) 98, 711
BcoDI GTCTC 4 cut(s) 114, 1075, 1133, 1580
BfaI CTAG 4 cut(s) 210, 237, 1319, 1377
BfmI CTRYAG 3 cut(s) 648, 883, 1400
BisI GCNGC 9 cut(s) 230, 233, 545, 663, 799, 802, 1403, 1418, 1520
BlsI GCNGC 9 cut(s) 231, 234, 546, 664, 800, 803, 1404, 1419, 1521
Bme1390I CCNGG 2 cut(s) 98, 711
BmgBI CACGTC 1 cut(s) 644
BmgT120I GGNCC 3 cut(s) 1081, 1082, 1179
BmiI GGNNCC 3 cut(s) 1083, 1480, 1561
BmrFI CCNGG 2 cut(s) 98, 711
BmsI GCATC 3 cut(s) 355, 612, 649
BpiI GAAGAC 1 cut(s) 505
BpmI CTGGAG 2 cut(s) 633, 1499
Bpu10I CCTNAGC 1 cut(s) 969
Bpu14I TTCGAA 1 cut(s) 898
BsaBI GATNNNNATC 1 cut(s) 1298
BsaHI GRCGYC 1 cut(s) 1459
BsaI GGTCTC 2 cut(s) 1075, 1133
BsaJI CCNNGG 1 cut(s) 96
Bsc4I CCNNNNNNNGG 1 cut(s) 688
Bse1I ACTGG 6 cut(s) 455, 572, 825, 1013, 1195, 1288
Bse3DI GCAATG 1 cut(s) 693
Bse8I GATNNNNATC 1 cut(s) 1298
BseBI CCWGG 2 cut(s) 98, 711
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 6 cut(s) 263, 420, 609, 898, 1136, 1266
BseJI GATNNNNATC 1 cut(s) 1298
BseLI CCNNNNNNNGG 1 cut(s) 688
BseMI GCAATG 1 cut(s) 693
BseMII CTCAG 2 cut(s) 9, 960
BseNI ACTGG 6 cut(s) 455, 572, 825, 1013, 1195, 1288
BseSI GKGCMC 2 cut(s) 682, 1085
BseXI GCAGC 8 cut(s) 216, 556, 649, 788, 810, 1414, 1429, 1531
BseYI CCCAGC 2 cut(s) 224, 682
BsgI GTGCAG 2 cut(s) 512, 817
BshFI GGCC 4 cut(s) 118, 332, 1083, 1181
BsiHKAI GWGCWC 2 cut(s) 1093, 1515
BslI CCNNNNNNNGG 1 cut(s) 688
BsmAI GTCTC 4 cut(s) 114, 1075, 1133, 1580
BsmBI CGTCTC 1 cut(s) 1580
BsnI GGCC 4 cut(s) 118, 332, 1083, 1181
Bso31I GGTCTC 2 cut(s) 1075, 1133
Bsp119I TTCGAA 1 cut(s) 898
Bsp120I GGGCCC 1 cut(s) 1081
Bsp1286I GDGCHC 4 cut(s) 682, 1085, 1093, 1515
Bsp1407I TGTACA 1 cut(s) 199
Bsp143I GATC 6 cut(s) 255, 706, 1209, 1299, 1358, 1543
BspACI CCGC 3 cut(s) 233, 556, 601
BspANI GGCC 4 cut(s) 118, 332, 1083, 1181
BspCNI CTCAG 2 cut(s) 10, 961
BspLI GGNNCC 3 cut(s) 1083, 1480, 1561
BspMAI CTGCAG 3 cut(s) 652, 887, 1404
BspPI GGATC 4 cut(s) 701, 1204, 1366, 1538
BspQI GCTCTTC 1 cut(s) 1419
BspT104I TTCGAA 1 cut(s) 898
BspTNI GGTCTC 2 cut(s) 1075, 1133
BsrBI CCGCTC 1 cut(s) 558
BsrDI GCAATG 1 cut(s) 693
BsrGI TGTACA 1 cut(s) 199
BsrI ACTGG 6 cut(s) 455, 572, 825, 1013, 1195, 1288
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 6 cut(s) 255, 706, 1209, 1299, 1358, 1543
BssNI GRCGYC 1 cut(s) 1459
BssSI CACGAG 1 cut(s) 1086
Bst2BI CACGAG 1 cut(s) 1086
Bst2UI CCWGG 2 cut(s) 98, 711
Bst4CI ACNGT 2 cut(s) 108, 504
Bst6I CTCTTC 2 cut(s) 1320, 1419
BstACI GRCGYC 1 cut(s) 1459
BstAUI TGTACA 1 cut(s) 199
BstBI TTCGAA 1 cut(s) 898
BstC8I GCNNGC 6 cut(s) 765, 816, 1034, 1038, 1345, 1349
BstDEI CTNAG 4 cut(s) 18, 252, 969, 1331
BstF5I GGATG 6 cut(s) 263, 420, 609, 898, 1136, 1266
BstKTI GATC 6 cut(s) 258, 709, 1212, 1302, 1361, 1546
BstMAI GTCTC 4 cut(s) 114, 1075, 1133, 1580
BstMBI GATC 6 cut(s) 255, 706, 1209, 1299, 1358, 1543
BstMWI GCNNNNNNNGC 5 cut(s) 1402, 1408, 1417, 1426, 1519
BstNI CCWGG 2 cut(s) 98, 711
BstNSI RCATGY 2 cut(s) 911, 1036
BstSCI CCNGG 2 cut(s) 96, 709
BstSFI CTRYAG 3 cut(s) 648, 883, 1400
BstSLI GKGCMC 2 cut(s) 682, 1085
BstV1I GCAGC 8 cut(s) 216, 556, 649, 788, 810, 1414, 1429, 1531
BstV2I GAAGAC 1 cut(s) 505
BstX2I RGATCY 3 cut(s) 706, 1358, 1543
BstYI RGATCY 3 cut(s) 706, 1358, 1543
BsuRI GGCC 4 cut(s) 118, 332, 1083, 1181
BtgZI GCGATG 1 cut(s) 1421
BtrI CACGTC 1 cut(s) 644
BtsCI GGATG 6 cut(s) 263, 420, 609, 898, 1136, 1266
BtsI GCAGTG 1 cut(s) 1418
BtsIMutI CAGTG 3 cut(s) 579, 818, 1418
Cac8I GCNNGC 6 cut(s) 765, 816, 1034, 1038, 1345, 1349
CaiI CAGNNNCTG 3 cut(s) 17, 488, 999
Cfr13I GGNCC 3 cut(s) 1081, 1082, 1179
Csp6I GTAC 1 cut(s) 200
CviAII CATG 7 cut(s) 29, 317, 619, 908, 1033, 1141, 1421
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 4 cut(s) 18, 252, 969, 1331
DpnI GATC 6 cut(s) 257, 708, 1211, 1301, 1360, 1545
DpnII GATC 6 cut(s) 255, 706, 1209, 1299, 1358, 1543
Eam1104I CTCTTC 2 cut(s) 1320, 1419
EarI CTCTTC 2 cut(s) 1320, 1419
EciI GGCGGA 1 cut(s) 616
Ecl136II GAGCTC 1 cut(s) 1513
Eco24I GRGCYC 2 cut(s) 1085, 1515
Eco31I GGTCTC 2 cut(s) 1075, 1133
Eco53kI GAGCTC 1 cut(s) 1513
Eco57I CTGAAG 1 cut(s) 747
EcoICRI GAGCTC 1 cut(s) 1513
EcoO109I RGGNCCY 1 cut(s) 1082
EcoRI GAATTC 1 cut(s) 7
EcoRII CCWGG 2 cut(s) 96, 709
EcoT38I GRGCYC 2 cut(s) 1085, 1515
Esp3I CGTCTC 1 cut(s) 1580
FaeI CATG 7 cut(s) 32, 320, 622, 911, 1036, 1144, 1424
FatI CATG 7 cut(s) 28, 316, 618, 907, 1032, 1140, 1420
FauI CCCGC 1 cut(s) 563
FauNDI CATATG 2 cut(s) 549, 1175
Fnu4HI GCNGC 9 cut(s) 230, 233, 545, 663, 799, 802, 1403, 1418, 1520
FokI GGATG 6 cut(s) 250, 427, 616, 905, 1123, 1253
FriOI GRGCYC 2 cut(s) 1085, 1515
Fsp4HI GCNGC 9 cut(s) 230, 233, 545, 663, 799, 802, 1403, 1418, 1520
FspBI CTAG 4 cut(s) 210, 237, 1319, 1377
GluI GCNGC 9 cut(s) 230, 233, 545, 663, 799, 802, 1403, 1418, 1520
GsaI CCCAGC 2 cut(s) 228, 686
GsuI CTGGAG 2 cut(s) 633, 1499
HaeIII GGCC 4 cut(s) 118, 332, 1083, 1181
Hin1I GRCGYC 1 cut(s) 1459
Hin1II CATG 7 cut(s) 32, 320, 622, 911, 1036, 1144, 1424
HincII GTYRAC 1 cut(s) 1463
HindII GTYRAC 1 cut(s) 1463
HinfI GANTC 8 cut(s) 22, 38, 44, 61, 151, 485, 608, 1486
HphI GGTGA 2 cut(s) 725, 788
Hpy166II GTNNAC 2 cut(s) 852, 1463
Hpy188I TCNGA 5 cut(s) 43, 364, 484, 520, 1075
Hpy188III TCNNGA 9 cut(s) 17, 71, 111, 155, 612, 725, 1055, 1207, 1291
Hpy8I GTNNAC 2 cut(s) 852, 1463
Hpy99I CGWCG 1 cut(s) 1461
HpyAV CCTTC 8 cut(s) 108, 294, 322, 393, 503, 764, 1201, 1469
HpyCH4III ACNGT 2 cut(s) 108, 504
HpyCH4IV ACGT 3 cut(s) 643, 1459, 1589
HpyF10VI GCNNNNNNNGC 5 cut(s) 1402, 1408, 1417, 1426, 1519
HpyF3I CTNAG 4 cut(s) 18, 252, 969, 1331
HpySE526I ACGT 3 cut(s) 643, 1459, 1589
Hsp92I GRCGYC 1 cut(s) 1459
Hsp92II CATG 7 cut(s) 32, 320, 622, 911, 1036, 1144, 1424
Kzo9I GATC 6 cut(s) 255, 706, 1209, 1299, 1358, 1543
LguI GCTCTTC 1 cut(s) 1419
LmnI GCTCC 4 cut(s) 19, 373, 1167, 1518
Lsp1109I GCAGC 8 cut(s) 216, 556, 649, 788, 810, 1414, 1429, 1531
LweI GCATC 3 cut(s) 355, 612, 649
MaeI CTAG 4 cut(s) 210, 237, 1319, 1377
MaeII ACGT 3 cut(s) 643, 1459, 1589
MaeIII GTNAC 4 cut(s) 457, 863, 910, 1491
MalI GATC 6 cut(s) 257, 708, 1211, 1301, 1360, 1545
MbiI CCGCTC 1 cut(s) 558
MboI GATC 6 cut(s) 255, 706, 1209, 1299, 1358, 1543
MfeI CAATTG 1 cut(s) 1532
MflI RGATCY 3 cut(s) 706, 1358, 1543
MhlI GDGCHC 4 cut(s) 682, 1085, 1093, 1515
MluCI AATT 9 cut(s) 7, 90, 472, 531, 630, 747, 1254, 1309, 1532
MlyI GAGTC 3 cut(s) 38, 145, 494
MmeI TCCRAC 1 cut(s) 486
MroXI GAANNNNTTC 1 cut(s) 1062
MseI TTAA 6 cut(s) 408, 582, 596, 786, 858, 1242
MspA1I CMGCKG 1 cut(s) 801
MspR9I CCNGG 2 cut(s) 98, 711
MunI CAATTG 1 cut(s) 1532
MvaI CCWGG 2 cut(s) 98, 711
MwoI GCNNNNNNNGC 5 cut(s) 1402, 1408, 1417, 1426, 1519
NdeI CATATG 2 cut(s) 549, 1175
NdeII GATC 6 cut(s) 255, 706, 1209, 1299, 1358, 1543
NlaIII CATG 7 cut(s) 32, 320, 622, 911, 1036, 1144, 1424
NlaIV GGNNCC 3 cut(s) 1083, 1480, 1561
NspI RCATGY 2 cut(s) 911, 1036
NspV TTCGAA 1 cut(s) 898
PaeI GCATGC 1 cut(s) 1036
PciI ACATGT 1 cut(s) 907
PciSI GCTCTTC 1 cut(s) 1419
PcsI WCGNNNNNNNCGW 1 cut(s) 1462
PdmI GAANNNNTTC 1 cut(s) 1062
PfeI GAWTC 5 cut(s) 22, 38, 61, 608, 1486
PkrI GCNGC 9 cut(s) 231, 234, 546, 664, 800, 803, 1404, 1419, 1521
PleI GAGTC 3 cut(s) 38, 145, 493
PpsI GAGTC 3 cut(s) 38, 145, 493
PscI ACATGT 1 cut(s) 907
Psp124BI GAGCTC 1 cut(s) 1515
Psp6I CCWGG 2 cut(s) 96, 709
PspFI CCCAGC 2 cut(s) 224, 682
PspGI CCWGG 2 cut(s) 96, 709
PspN4I GGNNCC 3 cut(s) 1083, 1480, 1561
PspOMI GGGCCC 1 cut(s) 1081
PspPI GGNCC 3 cut(s) 1081, 1082, 1179
PstI CTGCAG 3 cut(s) 652, 887, 1404
PstNI CAGNNNCTG 3 cut(s) 17, 488, 999
PsuI RGATCY 3 cut(s) 706, 1358, 1543
PvuII CAGCTG 1 cut(s) 801
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
SacI GAGCTC 1 cut(s) 1515
SapI GCTCTTC 1 cut(s) 1419
SaqAI TTAA 6 cut(s) 408, 582, 596, 786, 858, 1242
SatI GCNGC 9 cut(s) 230, 233, 545, 663, 799, 802, 1403, 1418, 1520
Sau3AI GATC 6 cut(s) 255, 706, 1209, 1299, 1358, 1543
Sau96I GGNCC 3 cut(s) 1081, 1082, 1179
SchI GAGTC 3 cut(s) 38, 145, 494
ScrFI CCNGG 2 cut(s) 98, 711
SduI GDGCHC 4 cut(s) 682, 1085, 1093, 1515
SfaNI GCATC 3 cut(s) 355, 612, 649
SfcI CTRYAG 3 cut(s) 648, 883, 1400
SfuI TTCGAA 1 cut(s) 898
SphI GCATGC 1 cut(s) 1036
Sse9I AATT 9 cut(s) 7, 90, 472, 531, 630, 747, 1254, 1309, 1532
SsiI CCGC 3 cut(s) 233, 556, 601
SspMI CTAG 4 cut(s) 210, 237, 1319, 1377
SstI GAGCTC 1 cut(s) 1515
StyD4I CCNGG 2 cut(s) 96, 709
TaaI ACNGT 2 cut(s) 108, 504
TaiI ACGT 3 cut(s) 646, 1462, 1592
TaqI TCGA 4 cut(s) 112, 392, 898, 988
TaqII GACCGA 1 cut(s) 1252
TasI AATT 9 cut(s) 7, 90, 472, 531, 630, 747, 1254, 1309, 1532
TatI WGTACW 1 cut(s) 199
TauI GCSGC 1 cut(s) 235
TfiI GAWTC 5 cut(s) 22, 38, 61, 608, 1486
Tru1I TTAA 6 cut(s) 408, 582, 596, 786, 858, 1242
Tru9I TTAA 6 cut(s) 408, 582, 596, 786, 858, 1242
TscAI CASTG 3 cut(s) 579, 825, 1418
TseI GCWGC 8 cut(s) 229, 544, 662, 798, 801, 1402, 1417, 1519
TspDTI ATGAA 8 cut(s) 53, 99, 348, 1125, 1400, 1404, 1437, 1554
TspGWI ACGGA 2 cut(s) 183, 256
TspRI CASTG 3 cut(s) 579, 825, 1418
XapI RAATTY 5 cut(s) 7, 90, 472, 747, 1309
XceI RCATGY 2 cut(s) 911, 1036
XmnI GAANNNNTTC 1 cut(s) 1062
XspI CTAG 4 cut(s) 210, 237, 1319, 1377
ZraI GACGTC 1 cut(s) 1460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.