Nuclear matrix constituent protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G67230 |
| fragaria_vesca | FvH4_6g45461 FvH4_6g45461 FvH4_6g45461 FvH4_6g45461 FvH4_6g45461 |
| malus_domestica | MD09G1082900.v1.1 |
| prunus_persica | Prupe.3G240800_v2.0.a1 |
| pyrus_communis | pycom09g00940 |
| rosa_chinensis | RchiOBHm_Chr2g0163401 |
| rosa_laevigata | RLG00000021390 |
| rosa_roxburghii | Rroxscaffold_2G00087370 |
| rosa_rugosa | Rorug02G0502200 Rorug02G0502300 |
| rosa_samantha | Rh2AG569300 Rh2BG581400 Rh2CG551200 Rh2DG591300 |
| rosa_wichuraiana | Rw2G047110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 199 |
| Acc36I | ACCTGC | 1 cut(s) | 199 |
| Acc65I | GGTACC | 1 cut(s) | 2483 |
| AccB1I | GGYRCC | 3 cut(s) | 2483, 2773, 3125 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 2477, 2493, 2591 |
| AccII | CGCG | 3 cut(s) | 240, 622, 3244 |
| AciI | CCGC | 5 cut(s) | 11, 16, 238, 775, 3370 |
| AclWI | GGATC | 2 cut(s) | 705, 1521 |
| AcoI | YGGCCR | 3 cut(s) | 558, 1833, 3052 |
| AcsI | RAATTY | 6 cut(s) | 445, 760, 846, 1157, 2273, 2566 |
| AcuI | CTGAAG | 4 cut(s) | 1473, 1637, 1647, 1730 |
| AcyI | GRCGYC | 1 cut(s) | 167 |
| AdeI | CACNNNGTG | 1 cut(s) | 3367 |
| AfaI | GTAC | 4 cut(s) | 1592, 2485, 3503, 3526 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 47, 48, 69, 176, 2381, 2477, 2493, 2591, 3212 |
| AflIII | ACRYGT | 1 cut(s) | 1753 |
| AjnI | CCWGG | 5 cut(s) | 161, 912, 2533, 3175, 3568 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2640, 2672 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 74, 106 |
| Alw21I | GWGCWC | 5 cut(s) | 270, 712, 1107, 3061, 3300 |
| Alw26I | GTCTC | 7 cut(s) | 36, 149, 944, 2211, 2422, 3381, 3489 |
| Alw44I | GTGCAC | 1 cut(s) | 708 |
| AlwI | GGATC | 2 cut(s) | 705, 1521 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2477, 3227 |
| AoxI | GGCC | 6 cut(s) | 228, 456, 558, 1833, 2858, 3052 |
| ApaLI | GTGCAC | 1 cut(s) | 708 |
| ApeKI | GCWGC | 9 cut(s) | 13, 307, 401, 626, 981, 1639, 3227, 3230, 3311 |
| ApoI | RAATTY | 6 cut(s) | 445, 760, 846, 1157, 2273, 2566 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 157, 189 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1611, 2727 |
| Asp718I | GGTACC | 1 cut(s) | 2483 |
| AspLEI | GCGC | 1 cut(s) | 3135 |
| AspS9I | GGNCC | 4 cut(s) | 228, 910, 1798, 3600 |
| AsuC2I | CCSGG | 1 cut(s) | 94 |
| AsuII | TTCGAA | 1 cut(s) | 715 |
| AsuNHI | GCTAGC | 4 cut(s) | 581, 640, 829, 988 |
| AvaII | GGWCC | 3 cut(s) | 910, 1798, 3600 |
| BaeGI | GKGCMC | 2 cut(s) | 712, 3130 |
| BalI | TGGCCA | 1 cut(s) | 1835 |
| BanI | GGYRCC | 3 cut(s) | 2483, 2773, 3125 |
| BanII | GRGCYC | 3 cut(s) | 80, 270, 1107 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1473, 1505, 2494, 2526 |
| BbsI | GAAGAC | 2 cut(s) | 65, 1635 |
| Bbv12I | GWGCWC | 5 cut(s) | 270, 712, 1107, 3061, 3300 |
| BbvCI | CCTCAGC | 2 cut(s) | 645, 2967 |
| BbvI | GCAGC | 9 cut(s) | 25, 294, 413, 613, 993, 1651, 3214, 3217, 3298 |
| BccI | CCATC | 6 cut(s) | 113, 1783, 1972, 2495, 3392, 3485 |
| BceAI | ACGGC | 3 cut(s) | 3039, 3215, 3453 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 494, 528, 551, 585, 3222, 3256 |
| BciT130I | CCWGG | 5 cut(s) | 163, 914, 2535, 3177, 3570 |
| BclI | TGATCA | 1 cut(s) | 1174 |
| BcnI | CCSGG | 1 cut(s) | 94 |
| BcoDI | GTCTC | 7 cut(s) | 36, 149, 944, 2211, 2422, 3381, 3489 |
| BfmI | CTRYAG | 3 cut(s) | 1490, 1559, 2862 |
| BfuAI | ACCTGC | 1 cut(s) | 199 |
| BglII | AGATCT | 1 cut(s) | 2465 |
| BlpI | GCTNAGC | 1 cut(s) | 3165 |
| Bme1390I | CCNGG | 6 cut(s) | 94, 163, 914, 2535, 3177, 3570 |
| Bme18I | GGWCC | 3 cut(s) | 910, 1798, 3600 |
| BmgT120I | GGNCC | 4 cut(s) | 228, 910, 1798, 3600 |
| BmiI | GGNNCC | 5 cut(s) | 229, 2485, 2498, 2775, 3127 |
| BmrFI | CCNGG | 6 cut(s) | 94, 163, 914, 2535, 3177, 3570 |
| BmrI | ACTGGG | 3 cut(s) | 57, 78, 2390 |
| BmtI | GCTAGC | 4 cut(s) | 585, 644, 833, 992 |
| BmuI | ACTGGG | 3 cut(s) | 57, 78, 2390 |
| BpiI | GAAGAC | 2 cut(s) | 65, 1635 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2540, 2572, 3287, 3319 |
| BpmI | CTGGAG | 4 cut(s) | 1091, 2454, 3159, 3234 |
| Bpu10I | CCTNAGC | 5 cut(s) | 645, 1794, 2201, 2907, 2967 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3165 |
| Bpu14I | TTCGAA | 1 cut(s) | 715 |
| BpuEI | CTTGAG | 3 cut(s) | 209, 2074, 3378 |
| BpuMI | CCSGG | 1 cut(s) | 94 |
| Bsa29I | ATCGAT | 1 cut(s) | 936 |
| BsaHI | GRCGYC | 1 cut(s) | 167 |
| BsaI | GGTCTC | 3 cut(s) | 36, 149, 2211 |
| BsaJI | CCNNGG | 8 cut(s) | 161, 459, 561, 1191, 1836, 2534, 2998, 3176 |
| BsaWI | WCCGGW | 1 cut(s) | 62 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1043, 1073, 3207, 3237 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 47, 48, 69, 176, 2381, 2477, 2493, 2591, 3212 |
| Bse118I | RCCGGY | 2 cut(s) | 169, 1554 |
| Bse1I | ACTGG | 5 cut(s) | 52, 73, 2385, 2471, 3217 |
| BseBI | CCWGG | 5 cut(s) | 163, 914, 2535, 3177, 3570 |
| BseCI | ATCGAT | 1 cut(s) | 936 |
| BseDI | CCNNGG | 8 cut(s) | 161, 459, 561, 1191, 1836, 2534, 2998, 3176 |
| BseGI | GGATG | 8 cut(s) | 124, 1147, 1201, 1684, 2612, 2630, 3097, 3565 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 47, 48, 69, 176, 2381, 2477, 2493, 2591, 3212 |
| BseNI | ACTGG | 5 cut(s) | 52, 73, 2385, 2471, 3217 |
| BseRI | GAGGAG | 8 cut(s) | 455, 1274, 1397, 1520, 1550, 1988, 2550, 2856 |
| BseSI | GKGCMC | 2 cut(s) | 712, 3130 |
| BseXI | GCAGC | 9 cut(s) | 25, 294, 413, 613, 993, 1651, 3214, 3217, 3298 |
| BseYI | CCCAGC | 1 cut(s) | 3129 |
| Bsh1236I | CGCG | 3 cut(s) | 240, 622, 3244 |
| Bsh1285I | CGRYCG | 1 cut(s) | 238 |
| BshFI | GGCC | 6 cut(s) | 230, 458, 560, 1835, 2860, 3054 |
| BshNI | GGYRCC | 3 cut(s) | 2483, 2773, 3125 |
| BshVI | ATCGAT | 1 cut(s) | 936 |
| BsiEI | CGRYCG | 1 cut(s) | 238 |
| BsiHKAI | GWGCWC | 5 cut(s) | 270, 712, 1107, 3061, 3300 |
| BsiSI | CCGG | 5 cut(s) | 63, 93, 170, 655, 1555 |
| BslFI | GGGAC | 3 cut(s) | 109, 2974, 3391 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 47, 48, 69, 176, 2381, 2477, 2493, 2591, 3212 |
| BsmAI | GTCTC | 7 cut(s) | 36, 149, 944, 2211, 2422, 3381, 3489 |
| BsmBI | CGTCTC | 1 cut(s) | 3489 |
| BsmFI | GGGAC | 3 cut(s) | 109, 2974, 3391 |
| BsnI | GGCC | 6 cut(s) | 230, 458, 560, 1835, 2860, 3054 |
| Bso31I | GGTCTC | 3 cut(s) | 36, 149, 2211 |
| Bsp119I | TTCGAA | 1 cut(s) | 715 |
| Bsp1286I | GDGCHC | 7 cut(s) | 80, 270, 712, 1107, 3061, 3130, 3300 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3165 |
| Bsp19I | CCATGG | 1 cut(s) | 2998 |
| BspACI | CCGC | 5 cut(s) | 11, 16, 238, 775, 3370 |
| BspANI | GGCC | 6 cut(s) | 230, 458, 560, 1835, 2860, 3054 |
| BspDI | ATCGAT | 1 cut(s) | 936 |
| BspFNI | CGCG | 3 cut(s) | 240, 622, 3244 |
| BspHI | TCATGA | 1 cut(s) | 1918 |
| BspLI | GGNNCC | 5 cut(s) | 229, 2485, 2498, 2775, 3127 |
| BspMAI | CTGCAG | 1 cut(s) | 2866 |
| BspMI | ACCTGC | 1 cut(s) | 199 |
| BspOI | GCTAGC | 4 cut(s) | 585, 644, 833, 992 |
| BspPI | GGATC | 2 cut(s) | 705, 1521 |
| BspQI | GCTCTTC | 1 cut(s) | 1665 |
| BspT104I | TTCGAA | 1 cut(s) | 715 |
| BspT107I | GGYRCC | 3 cut(s) | 2483, 2773, 3125 |
| BspTNI | GGTCTC | 3 cut(s) | 36, 149, 2211 |
| BsrFI | RCCGGY | 2 cut(s) | 169, 1554 |
| BsrI | ACTGG | 5 cut(s) | 52, 73, 2385, 2471, 3217 |
| BssAI | RCCGGY | 2 cut(s) | 169, 1554 |
| BssECI | CCNNGG | 8 cut(s) | 161, 459, 561, 1191, 1836, 2534, 2998, 3176 |
| BssNI | GRCGYC | 1 cut(s) | 167 |
| BssT1I | CCWWGG | 4 cut(s) | 459, 1191, 1836, 2998 |
| Bst2UI | CCWGG | 5 cut(s) | 163, 914, 2535, 3177, 3570 |
| Bst4CI | ACNGT | 5 cut(s) | 1563, 2294, 2945, 3116, 3223 |
| BstACI | GRCGYC | 1 cut(s) | 167 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 380, 481 |
| BstBI | TTCGAA | 1 cut(s) | 715 |
| BstDSI | CCRYGG | 1 cut(s) | 2998 |
| BstF5I | GGATG | 8 cut(s) | 124, 1147, 1201, 1684, 2612, 2630, 3097, 3565 |
| BstFNI | CGCG | 3 cut(s) | 240, 622, 3244 |
| BstHHI | GCGC | 1 cut(s) | 3135 |
| BstMAI | GTCTC | 7 cut(s) | 36, 149, 944, 2211, 2422, 3381, 3489 |
| BstMCI | CGRYCG | 1 cut(s) | 238 |
| BstNI | CCWGG | 5 cut(s) | 163, 914, 2535, 3177, 3570 |
| BstNSI | RCATGY | 1 cut(s) | 1597 |
| BstSCI | CCNGG | 6 cut(s) | 92, 161, 912, 2533, 3175, 3568 |
| BstSFI | CTRYAG | 3 cut(s) | 1490, 1559, 2862 |
| BstSLI | GKGCMC | 2 cut(s) | 712, 3130 |
| BstUI | CGCG | 3 cut(s) | 240, 622, 3244 |
| BstV1I | GCAGC | 9 cut(s) | 25, 294, 413, 613, 993, 1651, 3214, 3217, 3298 |
| BstV2I | GAAGAC | 2 cut(s) | 65, 1635 |
| BstX2I | RGATCY | 1 cut(s) | 2465 |
| BstYI | RGATCY | 1 cut(s) | 2465 |
| Bsu15I | ATCGAT | 1 cut(s) | 936 |
| BsuRI | GGCC | 6 cut(s) | 230, 458, 560, 1835, 2860, 3054 |
| BsuTUI | ATCGAT | 1 cut(s) | 936 |
| BtgI | CCRYGG | 1 cut(s) | 2998 |
| BtgZI | GCGATG | 1 cut(s) | 3225 |
| BtsCI | GGATG | 8 cut(s) | 124, 1147, 1201, 1684, 2612, 2630, 3097, 3565 |
| BtsI | GCAGTG | 1 cut(s) | 482 |
| BtsIMutI | CAGTG | 4 cut(s) | 189, 482, 2950, 3121 |
| BveI | ACCTGC | 1 cut(s) | 199 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2477, 3227 |
| CciI | TCATGA | 1 cut(s) | 1918 |
| CfoI | GCGC | 1 cut(s) | 3135 |
| Cfr10I | RCCGGY | 2 cut(s) | 169, 1554 |
| Cfr13I | GGNCC | 4 cut(s) | 228, 910, 1798, 3600 |
| ClaI | ATCGAT | 1 cut(s) | 936 |
| CseI | GACGC | 1 cut(s) | 175 |
| Csp6I | GTAC | 4 cut(s) | 1591, 2484, 3502, 3525 |
| CviQI | GTAC | 4 cut(s) | 1591, 2484, 3502, 3525 |
| DraI | TTTAAA | 1 cut(s) | 2397 |
| DraIII | CACNNNGTG | 1 cut(s) | 3367 |
| EaeI | YGGCCR | 3 cut(s) | 558, 1833, 3052 |
| Ecl136II | GAGCTC | 2 cut(s) | 268, 1105 |
| Eco130I | CCWWGG | 4 cut(s) | 459, 1191, 1836, 2998 |
| Eco147I | AGGCCT | 2 cut(s) | 458, 2860 |
| Eco24I | GRGCYC | 3 cut(s) | 80, 270, 1107 |
| Eco31I | GGTCTC | 3 cut(s) | 36, 149, 2211 |
| Eco32I | GATATC | 1 cut(s) | 2445 |
| Eco47I | GGWCC | 3 cut(s) | 910, 1798, 3600 |
| Eco53kI | GAGCTC | 2 cut(s) | 268, 1105 |
| Eco57I | CTGAAG | 4 cut(s) | 1473, 1637, 1647, 1730 |
| EcoICRI | GAGCTC | 2 cut(s) | 268, 1105 |
| EcoO109I | RGGNCCY | 1 cut(s) | 910 |
| EcoRI | GAATTC | 2 cut(s) | 760, 846 |
| EcoRII | CCWGG | 5 cut(s) | 161, 912, 2533, 3175, 3568 |
| EcoRV | GATATC | 1 cut(s) | 2445 |
| EcoT14I | CCWWGG | 4 cut(s) | 459, 1191, 1836, 2998 |
| EcoT22I | ATGCAT | 1 cut(s) | 2988 |
| EcoT38I | GRGCYC | 3 cut(s) | 80, 270, 1107 |
| ErhI | CCWWGG | 4 cut(s) | 459, 1191, 1836, 2998 |
| Esp3I | CGTCTC | 1 cut(s) | 3489 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1596, 1628, 2659, 2691 |
| FaqI | GGGAC | 3 cut(s) | 109, 2974, 3391 |
| FauNDI | CATATG | 1 cut(s) | 1857 |
| FbaI | TGATCA | 1 cut(s) | 1174 |
| FokI | GGATG | 8 cut(s) | 131, 1154, 1208, 1691, 2599, 2637, 3104, 3552 |
| FriOI | GRGCYC | 3 cut(s) | 80, 270, 1107 |
| GlaI | GCGC | 1 cut(s) | 3134 |
| GsaI | CCCAGC | 1 cut(s) | 3133 |
| GsuI | CTGGAG | 4 cut(s) | 1091, 2454, 3159, 3234 |
| HaeIII | GGCC | 6 cut(s) | 230, 458, 560, 1835, 2860, 3054 |
| HapII | CCGG | 5 cut(s) | 63, 93, 170, 655, 1555 |
| HgaI | GACGC | 1 cut(s) | 175 |
| HhaI | GCGC | 1 cut(s) | 3135 |
| Hin1I | GRCGYC | 1 cut(s) | 167 |
| Hin6I | GCGC | 1 cut(s) | 3133 |
| HinP1I | GCGC | 1 cut(s) | 3133 |
| HindIII | AAGCTT | 1 cut(s) | 498 |
| HpaII | CCGG | 5 cut(s) | 63, 93, 170, 655, 1555 |
| Hpy166II | GTNNAC | 4 cut(s) | 6, 333, 540, 710 |
| Hpy8I | GTNNAC | 4 cut(s) | 6, 333, 540, 710 |
| HpyCH4III | ACNGT | 5 cut(s) | 1563, 2294, 2945, 3116, 3223 |
| HpyCH4IV | ACGT | 2 cut(s) | 1755, 3106 |
| HpySE526I | ACGT | 2 cut(s) | 1755, 3106 |
| Hsp92I | GRCGYC | 1 cut(s) | 167 |
| HspAI | GCGC | 1 cut(s) | 3133 |
| KpnI | GGTACC | 1 cut(s) | 2487 |
| KroI | GCCGGC | 1 cut(s) | 169 |
| KroNI | GCCGGC | 1 cut(s) | 171 |
| Ksp22I | TGATCA | 1 cut(s) | 1174 |
| LguI | GCTCTTC | 1 cut(s) | 1665 |
| Lsp1109I | GCAGC | 9 cut(s) | 25, 294, 413, 613, 993, 1651, 3214, 3217, 3298 |
| MaeII | ACGT | 2 cut(s) | 1755, 3106 |
| MaeIII | GTNAC | 3 cut(s) | 1059, 3217, 3245 |
| MflI | RGATCY | 1 cut(s) | 2465 |
| MhlI | GDGCHC | 7 cut(s) | 80, 270, 712, 1107, 3061, 3130, 3300 |
| MlsI | TGGCCA | 1 cut(s) | 1835 |
| MluNI | TGGCCA | 1 cut(s) | 1835 |
| MlyI | GAGTC | 4 cut(s) | 91, 224, 3373, 3566 |
| MmeI | TCCRAC | 3 cut(s) | 1146, 1950, 2724 |
| Mox20I | TGGCCA | 1 cut(s) | 1835 |
| Mph1103I | ATGCAT | 1 cut(s) | 2988 |
| MroNI | GCCGGC | 1 cut(s) | 169 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1611, 2727 |
| MscI | TGGCCA | 1 cut(s) | 1835 |
| MslI | CAYNNNNRTG | 1 cut(s) | 3570 |
| Msp20I | TGGCCA | 1 cut(s) | 1835 |
| MspA1I | CMGCKG | 2 cut(s) | 16, 3164 |
| MspI | CCGG | 5 cut(s) | 63, 93, 170, 655, 1555 |
| MspR9I | CCNGG | 6 cut(s) | 94, 163, 914, 2535, 3177, 3570 |
| MvaI | CCWGG | 5 cut(s) | 163, 914, 2535, 3177, 3570 |
| MvnI | CGCG | 3 cut(s) | 240, 622, 3244 |
| NaeI | GCCGGC | 1 cut(s) | 171 |
| NciI | CCSGG | 1 cut(s) | 94 |
| NcoI | CCATGG | 1 cut(s) | 2998 |
| NdeI | CATATG | 1 cut(s) | 1857 |
| NgoMIV | GCCGGC | 1 cut(s) | 169 |
| NheI | GCTAGC | 4 cut(s) | 581, 640, 829, 988 |
| NlaIV | GGNNCC | 5 cut(s) | 229, 2485, 2498, 2775, 3127 |
| NmeAIII | GCCGAG | 1 cut(s) | 586 |
| NmuCI | GTSAC | 1 cut(s) | 3245 |
| NsiI | ATGCAT | 1 cut(s) | 2988 |
| NspI | RCATGY | 1 cut(s) | 1597 |
| NspV | TTCGAA | 1 cut(s) | 715 |
| PagI | TCATGA | 1 cut(s) | 1918 |
| PaqCI | CACCTGC | 1 cut(s) | 199 |
| PceI | AGGCCT | 2 cut(s) | 458, 2860 |
| PciSI | GCTCTTC | 1 cut(s) | 1665 |
| PdiI | GCCGGC | 1 cut(s) | 171 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1611, 2727 |
| PflFI | GACNNNGTC | 2 cut(s) | 3116, 3251 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 2477, 2493, 2591 |
| PfoI | TCCNGGA | 1 cut(s) | 92 |
| PleI | GAGTC | 4 cut(s) | 91, 223, 3373, 3565 |
| PpsI | GAGTC | 4 cut(s) | 91, 223, 3373, 3565 |
| PpuMI | RGGWCCY | 1 cut(s) | 910 |
| Psp124BI | GAGCTC | 2 cut(s) | 270, 1107 |
| Psp5II | RGGWCCY | 1 cut(s) | 910 |
| Psp6I | CCWGG | 5 cut(s) | 161, 912, 2533, 3175, 3568 |
| PspFI | CCCAGC | 1 cut(s) | 3129 |
| PspGI | CCWGG | 5 cut(s) | 161, 912, 2533, 3175, 3568 |
| PspN4I | GGNNCC | 5 cut(s) | 229, 2485, 2498, 2775, 3127 |
| PspPI | GGNCC | 4 cut(s) | 228, 910, 1798, 3600 |
| PspPPI | RGGWCCY | 1 cut(s) | 910 |
| PstI | CTGCAG | 1 cut(s) | 2866 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2477, 3227 |
| PsuI | RGATCY | 1 cut(s) | 2465 |
| PsyI | GACNNNGTC | 2 cut(s) | 3116, 3251 |
| PvuII | CAGCTG | 1 cut(s) | 3164 |
| RsaI | GTAC | 4 cut(s) | 1592, 2485, 3503, 3526 |
| RsaNI | GTAC | 4 cut(s) | 1591, 2484, 3502, 3525 |
| RseI | CAYNNNNRTG | 1 cut(s) | 3570 |
| SacI | GAGCTC | 2 cut(s) | 270, 1107 |
| SapI | GCTCTTC | 1 cut(s) | 1665 |
| Sau96I | GGNCC | 4 cut(s) | 228, 910, 1798, 3600 |
| SchI | GAGTC | 4 cut(s) | 91, 224, 3373, 3566 |
| ScrFI | CCNGG | 6 cut(s) | 94, 163, 914, 2535, 3177, 3570 |
| SduI | GDGCHC | 7 cut(s) | 80, 270, 712, 1107, 3061, 3130, 3300 |
| SfcI | CTRYAG | 3 cut(s) | 1490, 1559, 2862 |
| SfuI | TTCGAA | 1 cut(s) | 715 |
| SinI | GGWCC | 3 cut(s) | 910, 1798, 3600 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 3570 |
| SmlI | CTYRAG | 3 cut(s) | 188, 2053, 3393 |
| SmoI | CTYRAG | 3 cut(s) | 188, 2053, 3393 |
| SseBI | AGGCCT | 2 cut(s) | 458, 2860 |
| SsiI | CCGC | 5 cut(s) | 11, 16, 238, 775, 3370 |
| SstI | GAGCTC | 2 cut(s) | 270, 1107 |
| StuI | AGGCCT | 2 cut(s) | 458, 2860 |
| StyD4I | CCNGG | 6 cut(s) | 92, 161, 912, 2533, 3175, 3568 |
| StyI | CCWWGG | 4 cut(s) | 459, 1191, 1836, 2998 |
| TaaI | ACNGT | 5 cut(s) | 1563, 2294, 2945, 3116, 3223 |
| TaiI | ACGT | 2 cut(s) | 1758, 3109 |
| TatI | WGTACW | 2 cut(s) | 1590, 3501 |
| TauI | GCSGC | 1 cut(s) | 13 |
| TscAI | CASTG | 4 cut(s) | 189, 482, 2950, 3121 |
| TseFI | GTSAC | 1 cut(s) | 3245 |
| TseI | GCWGC | 9 cut(s) | 13, 307, 401, 626, 981, 1639, 3227, 3230, 3311 |
| Tsp45I | GTSAC | 1 cut(s) | 3245 |
| TspGWI | ACGGA | 3 cut(s) | 1948, 2489, 3058 |
| TspRI | CASTG | 4 cut(s) | 189, 482, 2950, 3121 |
| Tth111I | GACNNNGTC | 2 cut(s) | 3116, 3251 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 2477, 2493, 2591 |
| VneI | GTGCAC | 1 cut(s) | 708 |
| VpaK11BI | GGWCC | 3 cut(s) | 910, 1798, 3600 |
| XapI | RAATTY | 6 cut(s) | 445, 760, 846, 1157, 2273, 2566 |
| XbaI | TCTAGA | 1 cut(s) | 490 |
| XceI | RCATGY | 1 cut(s) | 1597 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1611, 2727 |
| Zsp2I | ATGCAT | 1 cut(s) | 2988 |