Rorug02G0502200

Nuclear matrix constituent protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
63455977 .. 63461462
5486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0502200.1

Sequence Viewer

Length: 1266 bp
ATGGCGTTAGAGTTCAGGTCGTACAGGGACGACGCGTGGTACGACGCTCGCGTCGTGACGGAGGGCCGCCGTGGTACTCGCCTGAGAATCAAGTTCTTCAACTTCGGCGACGACCAGGACGAGTTCGTCCACGCCAAGAACTTGAAGAAGCTCGAAGACGTCGACGCTCTGAGGTCTCGGTTCAGGAAAATCTCTTTCCAGTTTCAGGACACGGATTGTTCCCGGGTCGAACCGGGCCTGCTCGTCTGCGCCGCCCGACCCGTCGGCGACGGTGACCTGAAGTTCTACGATGCCGTTTTCAGAGGGGTGGTGAAGAAGGAGCATCAGATTGTGAAAGGAGTGGAAGCGTGCAAATGTACCTTCATCCTCGACTGGATTGACAGTGGAGAAACTGGTTCATGCACTGTTGAGAACATTTGCAGAGTGCAGGATACCAGTGACGAAGAATTGGATCCGGCTCTGATTTCTTTTCTCAACAAGGCCAGGGAGAGAATCGAAACTACTTTTTGTACTCGGTTGAGGATTACTAGTGGAGATGTTTATGATCTCAGAGCATCACACAAGGATGCAAGCCGTTCCACCGCAGCCATGGCTCTAAGCGGCTCTGTTGAAGGAATGGGTGCAGATTCTGATTCATTAAGGATCTCTTATGAAGCTGCTCATCCCAAAGAGCGCTACAAGGTTACAAGTCCGCCCAAGGAATCTTTGCCTTTGAGCTGCTACGTTGAAGGAACAAGTGATAATGCTTCTGATATGGATGGACGAGATGACATGGATGTAGGAGGGGCTCCCTATATGATAATAGTTGAGAACTTGGAGAAGGAAATATCACCGTTTACAATTATGGAATTTATACACCAGCAAGTTTCAATCACATGTCAAGTCTCTGTTTCGCCAAGTAAGTCATCGGAGTTGTATACACGTGCAATTATCCTATCGGACAGCAAAAAGAATCTTGAGAAGTTATCCGACTTTCTGGAGAGTCCAGATCACATCATCATTTCCTCCATAGGAAGACCTTGGCTCATGACTGAGAAAAGACCATTACCTGAGACACTAAGGGCATCAATCCAAACCTTATCTCAGATGGCATTGAAGACAAGAACTCTAAGTAACAATGAGTTGAATGTTGTCTTTTCTGGGAGTCACGAATACATGGAAGCTAAAGAGCAACAAAAATTGTTTAAAGAGTTCACTGAACACCAGTGTGGACTTCAGCGGAGGTTACAACTTGAAGAGGAAAAGATCTCAAAGAAGTACAGGTGA

Protein Analysis

421

Amino Acids

47.82

Weight (kDa)

5.59

Isoelectric Point (pI)

50.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 2 - 140 2e-28 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012184)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 50, 125
AatII GACGTC 1 cut(s) 162
AccI GTMKAC 2 cut(s) 162, 917
AccII CGCG 2 cut(s) 35, 51
AciI CCGC 6 cut(s) 67, 252, 582, 600, 692, 1219
AclWI GGATC 3 cut(s) 446, 459, 650
AcsI RAATTY 1 cut(s) 848
AcuI CTGAAG 2 cut(s) 299, 1199
AcvI CACGTG 1 cut(s) 923
AcyI GRCGYC 1 cut(s) 159
AfaI GTAC 6 cut(s) 23, 41, 76, 358, 511, 1259
AfeI AGCGCT 1 cut(s) 674
AfiI CCNNNNNNNGG 1 cut(s) 205
AflIII ACRYGT 3 cut(s) 33, 875, 920
AgsI TTSAA 8 cut(s) 100, 145, 611, 728, 870, 1096, 1126, 1235
AhlI ACTAGT 1 cut(s) 527
AjnI CCWGG 2 cut(s) 114, 482
AleI CACNNNNGTG 1 cut(s) 1206
AluBI AGCT 4 cut(s) 151, 656, 717, 1163
AluI AGCT 4 cut(s) 151, 656, 717, 1163
Alw26I GTCTC 3 cut(s) 180, 889, 1046
AlwI GGATC 3 cut(s) 446, 459, 650
AlwNI CAGNNNCTG 1 cut(s) 629
Ama87I CYCGRG 1 cut(s) 222
Aor51HI AGCGCT 1 cut(s) 674
AoxI GGCC 3 cut(s) 64, 235, 480
ApeKI GCWGC 3 cut(s) 584, 656, 717
ApoI RAATTY 1 cut(s) 848
AspLEI GCGC 2 cut(s) 251, 675
AspS9I GGNCC 2 cut(s) 64, 235
AsuC2I CCSGG 3 cut(s) 223, 224, 234
AsuHPI GGTGA 3 cut(s) 284, 322, 822
AvaI CYCGRG 1 cut(s) 222
BamHI GGATCC 1 cut(s) 451
BanII GRGCYC 1 cut(s) 790
BbrPI CACGTG 1 cut(s) 923
BbsI GAAGAC 3 cut(s) 162, 1021, 1103
BbvI GCAGC 3 cut(s) 596, 643, 704
BccI CCATC 2 cut(s) 752, 1081
BceAI ACGGC 3 cut(s) 54, 278, 558
BciT130I CCWGG 2 cut(s) 116, 484
BciVI GTATCC 1 cut(s) 424
BcnI CCSGG 3 cut(s) 223, 224, 234
BcoDI GTCTC 3 cut(s) 180, 889, 1046
BcuI ACTAGT 1 cut(s) 527
BfaI CTAG 1 cut(s) 528
BfoI RGCGCY 1 cut(s) 676
BfuI GTATCC 1 cut(s) 424
BglII AGATCT 1 cut(s) 1245
BisI GCNGC 6 cut(s) 67, 252, 585, 601, 657, 718
BlsI GCNGC 6 cut(s) 68, 253, 586, 602, 658, 719
Bme1390I CCNGG 5 cut(s) 116, 223, 224, 234, 484
BmeT110I CYCGRG 1 cut(s) 222
BmgT120I GGNCC 2 cut(s) 64, 235
BmiI GGNNCC 2 cut(s) 453, 789
BmrFI CCNGG 5 cut(s) 116, 223, 224, 234, 484
BmsI GCATC 5 cut(s) 280, 331, 556, 563, 1073
BpiI GAAGAC 3 cut(s) 162, 1021, 1103
BpmI CTGGAG 1 cut(s) 998
BpuEI CTTGAG 1 cut(s) 977
BpuMI CCSGG 3 cut(s) 223, 224, 234
BsaAI YACGTR 1 cut(s) 923
BsaHI GRCGYC 1 cut(s) 159
BsaI GGTCTC 1 cut(s) 180
BsaJI CCNNGG 6 cut(s) 70, 222, 483, 588, 696, 1019
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 5 cut(s) 199, 377, 397, 435, 1204
BseBI CCWGG 2 cut(s) 116, 484
BseDI CCNNGG 6 cut(s) 70, 222, 483, 588, 696, 1019
BseGI GGATG 5 cut(s) 363, 571, 661, 763, 781
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMII CTCAG 6 cut(s) 74, 161, 562, 1023, 1041, 1097
BseNI ACTGG 5 cut(s) 199, 377, 397, 435, 1204
BseXI GCAGC 3 cut(s) 596, 643, 704
BsgI GTGCAG 2 cut(s) 446, 642
Bsh1236I CGCG 2 cut(s) 35, 51
BshFI GGCC 3 cut(s) 66, 237, 482
BsiHKCI CYCGRG 1 cut(s) 222
BsiSI CCGG 3 cut(s) 223, 233, 455
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 3 cut(s) 180, 889, 1046
BsmFI GGGAC 1 cut(s) 41
BsnI GGCC 3 cut(s) 66, 237, 482
Bso31I GGTCTC 1 cut(s) 180
BsoBI CYCGRG 1 cut(s) 222
Bsp1286I GDGCHC 1 cut(s) 790
Bsp143I GATC 5 cut(s) 451, 544, 642, 988, 1245
Bsp19I CCATGG 1 cut(s) 588
BspACI CCGC 6 cut(s) 67, 252, 582, 600, 692, 1219
BspANI GGCC 3 cut(s) 66, 237, 482
BspCNI CTCAG 6 cut(s) 75, 162, 561, 1024, 1042, 1096
BspFNI CGCG 2 cut(s) 35, 51
BspHI TCATGA 1 cut(s) 1026
BspLI GGNNCC 2 cut(s) 453, 789
BspPI GGATC 3 cut(s) 446, 459, 650
BspTNI GGTCTC 1 cut(s) 180
BsrI ACTGG 5 cut(s) 199, 377, 397, 435, 1204
BssECI CCNNGG 6 cut(s) 70, 222, 483, 588, 696, 1019
BssMI GATC 5 cut(s) 451, 544, 642, 988, 1245
BssNAI GTATAC 1 cut(s) 918
BssNI GRCGYC 1 cut(s) 159
BssT1I CCWWGG 3 cut(s) 588, 696, 1019
Bst1107I GTATAC 1 cut(s) 918
Bst2UI CCWGG 2 cut(s) 116, 484
Bst4CI ACNGT 4 cut(s) 272, 383, 406, 834
Bst6I CTCTTC 1 cut(s) 1230
BstACI GRCGYC 1 cut(s) 159
BstBAI YACGTR 1 cut(s) 923
BstC8I GCNNGC 4 cut(s) 49, 239, 349, 571
BstDEI CTNAG 9 cut(s) 83, 170, 548, 596, 1032, 1050, 1058, 1083, 1109
BstDSI CCRYGG 2 cut(s) 70, 588
BstEII GGTNACC 1 cut(s) 272
BstF5I GGATG 5 cut(s) 363, 571, 661, 763, 781
BstFNI CGCG 2 cut(s) 35, 51
BstH2I RGCGCY 1 cut(s) 676
BstHHI GCGC 2 cut(s) 251, 675
BstKTI GATC 5 cut(s) 454, 547, 645, 991, 1248
BstMAI GTCTC 3 cut(s) 180, 889, 1046
BstMBI GATC 5 cut(s) 451, 544, 642, 988, 1245
BstMWI GCNNNNNNNGC 1 cut(s) 590
BstNI CCWGG 2 cut(s) 116, 484
BstNSI RCATGY 1 cut(s) 879
BstPI GGTNACC 1 cut(s) 272
BstSCI CCNGG 5 cut(s) 114, 221, 222, 232, 482
BstUI CGCG 2 cut(s) 35, 51
BstV1I GCAGC 3 cut(s) 596, 643, 704
BstV2I GAAGAC 3 cut(s) 162, 1021, 1103
BstX2I RGATCY 3 cut(s) 451, 642, 1245
BstYI RGATCY 3 cut(s) 451, 642, 1245
BstZ17I GTATAC 1 cut(s) 918
BsuI GTATCC 1 cut(s) 424
BsuRI GGCC 3 cut(s) 66, 237, 482
BtgI CCRYGG 2 cut(s) 70, 588
BtsCI GGATG 5 cut(s) 363, 571, 661, 763, 781
BtsIMutI CAGTG 5 cut(s) 388, 402, 442, 1194, 1211
Cac8I GCNNGC 4 cut(s) 49, 239, 349, 571
CaiI CAGNNNCTG 1 cut(s) 629
CciI TCATGA 1 cut(s) 1026
CfoI GCGC 2 cut(s) 251, 675
Cfr13I GGNCC 2 cut(s) 64, 235
Cfr9I CCCGGG 1 cut(s) 222
CseI GACGC 4 cut(s) 40, 41, 53, 173
Csp6I GTAC 6 cut(s) 22, 40, 75, 357, 510, 1258
CviAII CATG 6 cut(s) 399, 589, 772, 876, 1027, 1156
CviQI GTAC 6 cut(s) 22, 40, 75, 357, 510, 1258
DdeI CTNAG 9 cut(s) 83, 170, 548, 596, 1032, 1050, 1058, 1083, 1109
DpnI GATC 5 cut(s) 453, 546, 644, 990, 1247
DpnII GATC 5 cut(s) 451, 544, 642, 988, 1245
DraI TTTAAA 1 cut(s) 1186
DrdI GACNNNNNNGTC 2 cut(s) 50, 125
DseDI GACNNNNNNGTC 2 cut(s) 50, 125
Eam1104I CTCTTC 1 cut(s) 1230
EarI CTCTTC 1 cut(s) 1230
EciI GGCGGA 1 cut(s) 681
Eco130I CCWWGG 3 cut(s) 588, 696, 1019
Eco24I GRGCYC 1 cut(s) 790
Eco31I GGTCTC 1 cut(s) 180
Eco47III AGCGCT 1 cut(s) 674
Eco57I CTGAAG 2 cut(s) 299, 1199
Eco72I CACGTG 1 cut(s) 923
Eco88I CYCGRG 1 cut(s) 222
Eco91I GGTNACC 1 cut(s) 272
EcoO65I GGTNACC 1 cut(s) 272
EcoRII CCWGG 2 cut(s) 114, 482
EcoT14I CCWWGG 3 cut(s) 588, 696, 1019
EcoT38I GRGCYC 1 cut(s) 790
ErhI CCWWGG 3 cut(s) 588, 696, 1019
FaeI CATG 6 cut(s) 402, 592, 775, 879, 1030, 1159
FalI AAGNNNNNCTT 2 cut(s) 631, 663
FaqI GGGAC 1 cut(s) 41
FatI CATG 6 cut(s) 398, 588, 771, 875, 1026, 1155
FblI GTMKAC 2 cut(s) 162, 917
Fnu4HI GCNGC 6 cut(s) 67, 252, 585, 601, 657, 718
FokI GGATG 5 cut(s) 350, 578, 648, 770, 788
FriOI GRGCYC 1 cut(s) 790
Fsp4HI GCNGC 6 cut(s) 67, 252, 585, 601, 657, 718
FspBI CTAG 1 cut(s) 528
GlaI GCGC 2 cut(s) 250, 674
GluI GCNGC 6 cut(s) 67, 252, 585, 601, 657, 718
GsuI CTGGAG 1 cut(s) 998
HaeII RGCGCY 1 cut(s) 676
HaeIII GGCC 3 cut(s) 66, 237, 482
HapII CCGG 3 cut(s) 223, 233, 455
HgaI GACGC 4 cut(s) 40, 41, 53, 173
HhaI GCGC 2 cut(s) 251, 675
Hin1I GRCGYC 1 cut(s) 159
Hin1II CATG 6 cut(s) 402, 592, 775, 879, 1030, 1159
Hin6I GCGC 2 cut(s) 249, 673
HinP1I GCGC 2 cut(s) 249, 673
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 8 cut(s) 87, 492, 626, 632, 701, 952, 982, 1144
HpaII CCGG 3 cut(s) 223, 233, 455
HphI GGTGA 3 cut(s) 284, 322, 822
Hpy166II GTNNAC 6 cut(s) 130, 163, 837, 918, 1194, 1211
Hpy188III TCNNGA 8 cut(s) 55, 184, 206, 956, 977, 986, 1027, 1148
Hpy8I GTNNAC 6 cut(s) 130, 163, 837, 918, 1194, 1211
Hpy99I CGWCG 8 cut(s) 35, 47, 56, 113, 164, 167, 266, 272
HpyAV CCTTC 5 cut(s) 310, 370, 605, 722, 814
HpyCH4III ACNGT 4 cut(s) 272, 383, 406, 834
HpyCH4IV ACGT 3 cut(s) 159, 723, 922
HpyCH4V TGCA 7 cut(s) 351, 402, 420, 427, 569, 623, 926
HpyF10VI GCNNNNNNNGC 1 cut(s) 590
HpyF3I CTNAG 9 cut(s) 83, 170, 548, 596, 1032, 1050, 1058, 1083, 1109
HpySE526I ACGT 3 cut(s) 159, 723, 922
Hsp92I GRCGYC 1 cut(s) 159
Hsp92II CATG 6 cut(s) 402, 592, 775, 879, 1030, 1159
HspAI GCGC 2 cut(s) 249, 673
Kzo9I GATC 5 cut(s) 451, 544, 642, 988, 1245
LmnI GCTCC 2 cut(s) 319, 793
Lsp1109I GCAGC 3 cut(s) 596, 643, 704
LweI GCATC 5 cut(s) 280, 331, 556, 563, 1073
MaeI CTAG 1 cut(s) 528
MaeII ACGT 3 cut(s) 159, 723, 922
MaeIII GTNAC 7 cut(s) 55, 272, 437, 682, 1112, 1145, 1224
MalI GATC 5 cut(s) 453, 546, 644, 990, 1247
MboI GATC 5 cut(s) 451, 544, 642, 988, 1245
MboII GAAGA 8 cut(s) 88, 157, 167, 325, 455, 1026, 1108, 1247
MflI RGATCY 3 cut(s) 451, 642, 1245
MhlI GDGCHC 1 cut(s) 790
MluCI AATT 5 cut(s) 446, 840, 848, 927, 1178
MluI ACGCGT 1 cut(s) 33
MlyI GAGTC 2 cut(s) 991, 1153
MmeI TCCRAC 1 cut(s) 993
MnlI CCTC 9 cut(s) 55, 165, 296, 377, 513, 776, 1015, 1215, 1231
MseI TTAA 2 cut(s) 638, 1185
MslI CAYNNNNRTG 2 cut(s) 564, 1206
MspA1I CMGCKG 1 cut(s) 1219
MspI CCGG 3 cut(s) 223, 233, 455
MspR9I CCNGG 5 cut(s) 116, 223, 224, 234, 484
MvaI CCWGG 2 cut(s) 116, 484
MvnI CGCG 2 cut(s) 35, 51
MwoI GCNNNNNNNGC 1 cut(s) 590
NciI CCSGG 3 cut(s) 223, 224, 234
NcoI CCATGG 1 cut(s) 588
NdeII GATC 5 cut(s) 451, 544, 642, 988, 1245
NlaIII CATG 6 cut(s) 402, 592, 775, 879, 1030, 1159
NlaIV GGNNCC 2 cut(s) 453, 789
NmuCI GTSAC 4 cut(s) 55, 272, 437, 1145
NspI RCATGY 1 cut(s) 879
OliI CACNNNNGTG 1 cut(s) 1206
PagI TCATGA 1 cut(s) 1026
PciI ACATGT 1 cut(s) 875
PcsI WCGNNNNNNNCGW 5 cut(s) 39, 48, 51, 117, 159
PfeI GAWTC 6 cut(s) 87, 492, 626, 632, 701, 952
PkrI GCNGC 6 cut(s) 68, 253, 586, 602, 658, 719
PleI GAGTC 2 cut(s) 990, 1152
PmaCI CACGTG 1 cut(s) 923
PmlI CACGTG 1 cut(s) 923
PpsI GAGTC 2 cut(s) 990, 1152
Ppu21I YACGTR 1 cut(s) 923
PscI ACATGT 1 cut(s) 875
Psp6I CCWGG 2 cut(s) 114, 482
PspCI CACGTG 1 cut(s) 923
PspEI GGTNACC 1 cut(s) 272
PspGI CCWGG 2 cut(s) 114, 482
PspN4I GGNNCC 2 cut(s) 453, 789
PspPI GGNCC 2 cut(s) 64, 235
PstNI CAGNNNCTG 1 cut(s) 629
PsuI RGATCY 3 cut(s) 451, 642, 1245
RsaI GTAC 6 cut(s) 23, 41, 76, 358, 511, 1259
RsaNI GTAC 6 cut(s) 22, 40, 75, 357, 510, 1258
RseI CAYNNNNRTG 2 cut(s) 564, 1206
SalI GTCGAC 1 cut(s) 161
SaqAI TTAA 2 cut(s) 638, 1185
SatI GCNGC 6 cut(s) 67, 252, 585, 601, 657, 718
Sau3AI GATC 5 cut(s) 451, 544, 642, 988, 1245
Sau96I GGNCC 2 cut(s) 64, 235
SchI GAGTC 2 cut(s) 991, 1153
ScrFI CCNGG 5 cut(s) 116, 223, 224, 234, 484
SduI GDGCHC 1 cut(s) 790
SfaNI GCATC 5 cut(s) 280, 331, 556, 563, 1073
SgrDI CGTCGACG 1 cut(s) 161
SmaI CCCGGG 1 cut(s) 224
SmiMI CAYNNNNRTG 2 cut(s) 564, 1206
SmlI CTYRAG 1 cut(s) 956
SmoI CTYRAG 1 cut(s) 956
SpeI ACTAGT 1 cut(s) 527
Sse9I AATT 5 cut(s) 446, 840, 848, 927, 1178
SsiI CCGC 6 cut(s) 67, 252, 582, 600, 692, 1219
SspMI CTAG 1 cut(s) 528
StyD4I CCNGG 5 cut(s) 114, 221, 222, 232, 482
StyI CCWWGG 3 cut(s) 588, 696, 1019
TaaI ACNGT 4 cut(s) 272, 383, 406, 834
TaiI ACGT 3 cut(s) 162, 726, 925
TaqI TCGA 5 cut(s) 153, 162, 228, 369, 495
TasI AATT 5 cut(s) 446, 840, 848, 927, 1178
TatI WGTACW 2 cut(s) 509, 1257
TauI GCSGC 3 cut(s) 69, 254, 603
TfiI GAWTC 6 cut(s) 87, 492, 626, 632, 701, 952
Tru1I TTAA 2 cut(s) 638, 1185
Tru9I TTAA 2 cut(s) 638, 1185
TscAI CASTG 5 cut(s) 388, 409, 442, 1201, 1211
TseFI GTSAC 4 cut(s) 55, 272, 437, 1145
TseI GCWGC 3 cut(s) 584, 656, 717
Tsp45I GTSAC 4 cut(s) 55, 272, 437, 1145
TspDTI ATGAA 4 cut(s) 352, 387, 624, 666
TspGWI ACGGA 2 cut(s) 74, 227
TspMI CCCGGG 1 cut(s) 222
TspRI CASTG 5 cut(s) 388, 409, 442, 1201, 1211
XapI RAATTY 1 cut(s) 848
XceI RCATGY 1 cut(s) 879
XcmI CCANNNNNNNNNTGG 1 cut(s) 586
XmaI CCCGGG 1 cut(s) 222
XmiI GTMKAC 2 cut(s) 162, 917
XspI CTAG 1 cut(s) 528
ZraI GACGTC 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.