Nuclear matrix constituent protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G67230 |
| fragaria_vesca | FvH4_6g45461 FvH4_6g45461 FvH4_6g45461 FvH4_6g45461 FvH4_6g45461 |
| malus_domestica | MD09G1082900.v1.1 |
| prunus_persica | Prupe.3G240800_v2.0.a1 |
| pyrus_communis | pycom09g00940 |
| rosa_chinensis | RchiOBHm_Chr2g0163401 |
| rosa_laevigata | RLG00000021390 |
| rosa_roxburghii | Rroxscaffold_2G00087370 |
| rosa_rugosa | Rorug02G0502200 Rorug02G0502300 |
| rosa_samantha | Rh2AG569300 Rh2BG581400 Rh2CG551200 Rh2DG591300 |
| rosa_wichuraiana | Rw2G047110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 748 |
| AatII | GACGTC | 1 cut(s) | 336 |
| AccB1I | GGYRCC | 2 cut(s) | 2545, 2737 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2441 |
| AccI | GTMKAC | 1 cut(s) | 3441 |
| AccII | CGCG | 5 cut(s) | 146, 222, 2994, 3000, 3189 |
| AclWI | GGATC | 6 cut(s) | 113, 900, 1081, 1503, 1812, 2417 |
| AcoI | YGGCCR | 4 cut(s) | 217, 540, 1815, 2995 |
| AcsI | RAATTY | 5 cut(s) | 492, 828, 1139, 1904, 2530 |
| AcuI | CTGAAG | 9 cut(s) | 648, 700, 1355, 1455, 1533, 1619, 1629, 1712, 1761 |
| AcyI | GRCGYC | 2 cut(s) | 149, 333 |
| AfaI | GTAC | 5 cut(s) | 278, 1574, 2905, 3134, 3232 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 676 |
| AhlI | ACTAGT | 1 cut(s) | 1396 |
| AjiI | CACGTC | 1 cut(s) | 2926 |
| AjnI | CCWGG | 5 cut(s) | 1119, 1428, 1817, 3118, 3526 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2440, 2472 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 77, 109 |
| Alw21I | GWGCWC | 5 cut(s) | 82, 252, 694, 2524, 2833 |
| Alw26I | GTCTC | 8 cut(s) | 36, 684, 734, 926, 1904, 2415, 2436, 3323 |
| Alw44I | GTGCAC | 1 cut(s) | 690 |
| AlwI | GGATC | 6 cut(s) | 113, 900, 1081, 1503, 1812, 2417 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 215, 1270, 2441 |
| Ama87I | CYCGRG | 3 cut(s) | 681, 1022, 2497 |
| AoxI | GGCC | 7 cut(s) | 217, 438, 540, 820, 1815, 2813, 2995 |
| ApaLI | GTGCAC | 1 cut(s) | 690 |
| ApoI | RAATTY | 5 cut(s) | 492, 828, 1139, 1904, 2530 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 2691, 3096, 3114 |
| AspLEI | GCGC | 4 cut(s) | 209, 2994, 3002, 3078 |
| AspS9I | GGNCC | 3 cut(s) | 72, 820, 3558 |
| AsuC2I | CCSGG | 7 cut(s) | 49, 70, 97, 2498, 2499, 2556, 3469 |
| AsuHPI | GGTGA | 6 cut(s) | 1715, 2291, 2570, 3047, 3365, 3418 |
| AsuII | TTCGAA | 2 cut(s) | 267, 697 |
| AsuNHI | GCTAGC | 3 cut(s) | 811, 970, 3290 |
| AvaI | CYCGRG | 3 cut(s) | 681, 1022, 2497 |
| AvaII | GGWCC | 2 cut(s) | 72, 3558 |
| BaeGI | GKGCMC | 1 cut(s) | 694 |
| BalI | TGGCCA | 1 cut(s) | 1817 |
| BanI | GGYRCC | 2 cut(s) | 2545, 2737 |
| BanII | GRGCYC | 2 cut(s) | 252, 2833 |
| BbsI | GAAGAC | 4 cut(s) | 65, 336, 1617, 3498 |
| Bbv12I | GWGCWC | 5 cut(s) | 82, 252, 694, 2524, 2833 |
| BccI | CCATC | 9 cut(s) | 95, 1124, 1954, 2162, 2584, 2927, 3023, 3212, 3344 |
| BceAI | ACGGC | 1 cut(s) | 621 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 533, 567, 2501, 2535, 3317, 3351 |
| BciT130I | CCWGG | 5 cut(s) | 1121, 1430, 1819, 3120, 3528 |
| BcnI | CCSGG | 7 cut(s) | 49, 70, 97, 2498, 2499, 2556, 3469 |
| BcoDI | GTCTC | 8 cut(s) | 36, 684, 734, 926, 1904, 2415, 2436, 3323 |
| BcuI | ACTAGT | 1 cut(s) | 1396 |
| BfmI | CTRYAG | 2 cut(s) | 1472, 2907 |
| BglII | AGATCT | 1 cut(s) | 2613 |
| Bme18I | GGWCC | 2 cut(s) | 72, 3558 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 676 |
| BmeT110I | CYCGRG | 3 cut(s) | 681, 1022, 2497 |
| BmgBI | CACGTC | 1 cut(s) | 2926 |
| BmgT120I | GGNCC | 3 cut(s) | 72, 820, 3558 |
| BmiI | GGNNCC | 8 cut(s) | 67, 73, 163, 1427, 2547, 2739, 2950, 3070 |
| BmtI | GCTAGC | 3 cut(s) | 815, 974, 3294 |
| BpiI | GAAGAC | 4 cut(s) | 65, 336, 1617, 3498 |
| BpmI | CTGGAG | 3 cut(s) | 1973, 2418, 3177 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2183, 2862 |
| Bpu14I | TTCGAA | 2 cut(s) | 267, 697 |
| BpuEI | CTTGAG | 3 cut(s) | 191, 2056, 2243 |
| BpuMI | CCSGG | 7 cut(s) | 49, 70, 97, 2498, 2499, 2556, 3469 |
| BsaHI | GRCGYC | 2 cut(s) | 149, 333 |
| BsaI | GGTCTC | 2 cut(s) | 36, 2436 |
| BsaWI | WCCGGW | 3 cut(s) | 62, 74, 3321 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 77, 107, 1025, 1055 |
| Bse1I | ACTGG | 8 cut(s) | 152, 220, 274, 1662, 1818, 2435, 2952, 3160 |
| Bse3DI | GCAATG | 2 cut(s) | 108, 405 |
| BseBI | CCWGG | 5 cut(s) | 1121, 1430, 1819, 3120, 3528 |
| BseGI | GGATG | 6 cut(s) | 106, 1116, 1129, 1666, 2576, 3523 |
| BseMI | GCAATG | 2 cut(s) | 108, 405 |
| BseNI | ACTGG | 8 cut(s) | 152, 220, 274, 1662, 1818, 2435, 2952, 3160 |
| BseRI | GAGGAG | 7 cut(s) | 437, 860, 1256, 1379, 1970, 2514, 3224 |
| BseSI | GKGCMC | 1 cut(s) | 694 |
| BseX3I | CGGCCG | 1 cut(s) | 2995 |
| BseYI | CCCAGC | 2 cut(s) | 2346, 3072 |
| Bsh1236I | CGCG | 5 cut(s) | 146, 222, 2994, 3000, 3189 |
| Bsh1285I | CGRYCG | 2 cut(s) | 2998, 3149 |
| BshFI | GGCC | 7 cut(s) | 219, 440, 542, 822, 1817, 2815, 2997 |
| BshNI | GGYRCC | 2 cut(s) | 2545, 2737 |
| BsiEI | CGRYCG | 2 cut(s) | 2998, 3149 |
| BsiHKAI | GWGCWC | 5 cut(s) | 82, 252, 694, 2524, 2833 |
| BsiHKCI | CYCGRG | 3 cut(s) | 681, 1022, 2497 |
| BslFI | GGGAC | 1 cut(s) | 2735 |
| BsmAI | GTCTC | 8 cut(s) | 36, 684, 734, 926, 1904, 2415, 2436, 3323 |
| BsmFI | GGGAC | 1 cut(s) | 2735 |
| BsnI | GGCC | 7 cut(s) | 219, 440, 542, 822, 1817, 2815, 2997 |
| Bso31I | GGTCTC | 2 cut(s) | 36, 2436 |
| BsoBI | CYCGRG | 3 cut(s) | 681, 1022, 2497 |
| Bsp119I | TTCGAA | 2 cut(s) | 267, 697 |
| Bsp1286I | GDGCHC | 5 cut(s) | 82, 252, 694, 2524, 2833 |
| BspANI | GGCC | 7 cut(s) | 219, 440, 542, 822, 1817, 2815, 2997 |
| BspFNI | CGCG | 5 cut(s) | 146, 222, 2994, 3000, 3189 |
| BspHI | TCATGA | 1 cut(s) | 1900 |
| BspLI | GGNNCC | 8 cut(s) | 67, 73, 163, 1427, 2547, 2739, 2950, 3070 |
| BspMAI | CTGCAG | 2 cut(s) | 1476, 2911 |
| BspOI | GCTAGC | 3 cut(s) | 815, 974, 3294 |
| BspPI | GGATC | 6 cut(s) | 113, 900, 1081, 1503, 1812, 2417 |
| BspT104I | TTCGAA | 2 cut(s) | 267, 697 |
| BspT107I | GGYRCC | 2 cut(s) | 2545, 2737 |
| BspTNI | GGTCTC | 2 cut(s) | 36, 2436 |
| BsrDI | GCAATG | 2 cut(s) | 108, 405 |
| BsrI | ACTGG | 8 cut(s) | 152, 220, 274, 1662, 1818, 2435, 2952, 3160 |
| BssNI | GRCGYC | 2 cut(s) | 149, 333 |
| BssT1I | CCWWGG | 5 cut(s) | 441, 816, 1173, 2426, 2941 |
| Bst2UI | CCWGG | 5 cut(s) | 1121, 1430, 1819, 3120, 3528 |
| Bst4CI | ACNGT | 4 cut(s) | 18, 2732, 2888, 2903 |
| Bst6I | CTCTTC | 6 cut(s) | 367, 567, 694, 798, 3375, 3396 |
| BstACI | GRCGYC | 2 cut(s) | 149, 333 |
| BstBI | TTCGAA | 2 cut(s) | 267, 697 |
| BstF5I | GGATG | 6 cut(s) | 106, 1116, 1129, 1666, 2576, 3523 |
| BstFNI | CGCG | 5 cut(s) | 146, 222, 2994, 3000, 3189 |
| BstHHI | GCGC | 4 cut(s) | 209, 2994, 3002, 3078 |
| BstMAI | GTCTC | 8 cut(s) | 36, 684, 734, 926, 1904, 2415, 2436, 3323 |
| BstMCI | CGRYCG | 2 cut(s) | 2998, 3149 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 362, 560, 614, 623, 1630, 1871, 1948, 3179, 3266 |
| BstNI | CCWGG | 5 cut(s) | 1121, 1430, 1819, 3120, 3528 |
| BstNSI | RCATGY | 1 cut(s) | 1739 |
| BstSFI | CTRYAG | 2 cut(s) | 1472, 2907 |
| BstSLI | GKGCMC | 1 cut(s) | 694 |
| BstUI | CGCG | 5 cut(s) | 146, 222, 2994, 3000, 3189 |
| BstV2I | GAAGAC | 4 cut(s) | 65, 336, 1617, 3498 |
| BstX2I | RGATCY | 5 cut(s) | 892, 1086, 1495, 1804, 2613 |
| BstYI | RGATCY | 5 cut(s) | 892, 1086, 1495, 1804, 2613 |
| BstZI | CGGCCG | 1 cut(s) | 2995 |
| BsuRI | GGCC | 7 cut(s) | 219, 440, 542, 822, 1817, 2815, 2997 |
| BtrI | CACGTC | 1 cut(s) | 2926 |
| BtsCI | GGATG | 6 cut(s) | 106, 1116, 1129, 1666, 2576, 3523 |
| BtsI | GCAGTG | 1 cut(s) | 3246 |
| BtsIMutI | CAGTG | 6 cut(s) | 213, 935, 2595, 2737, 2893, 3246 |
| CaiI | CAGNNNCTG | 3 cut(s) | 215, 1270, 2441 |
| CciI | TCATGA | 1 cut(s) | 1900 |
| CciNI | GCGGCCGC | 1 cut(s) | 2995 |
| CfoI | GCGC | 4 cut(s) | 209, 2994, 3002, 3078 |
| Cfr13I | GGNCC | 3 cut(s) | 72, 820, 3558 |
| Cfr9I | CCCGGG | 1 cut(s) | 2497 |
| CseI | GACGC | 1 cut(s) | 157 |
| Csp6I | GTAC | 5 cut(s) | 277, 1573, 2904, 3133, 3231 |
| CviQI | GTAC | 5 cut(s) | 277, 1573, 2904, 3133, 3231 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 748 |
| DriI | GACNNNNNGTC | 1 cut(s) | 676 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 748 |
| EaeI | YGGCCR | 4 cut(s) | 217, 540, 1815, 2995 |
| EagI | CGGCCG | 1 cut(s) | 2995 |
| Eam1104I | CTCTTC | 6 cut(s) | 367, 567, 694, 798, 3375, 3396 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 676 |
| EarI | CTCTTC | 6 cut(s) | 367, 567, 694, 798, 3375, 3396 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 2 cut(s) | 250, 2831 |
| EclXI | CGGCCG | 1 cut(s) | 2995 |
| Eco130I | CCWWGG | 5 cut(s) | 441, 816, 1173, 2426, 2941 |
| Eco147I | AGGCCT | 2 cut(s) | 440, 2815 |
| Eco24I | GRGCYC | 2 cut(s) | 252, 2833 |
| Eco31I | GGTCTC | 2 cut(s) | 36, 2436 |
| Eco47I | GGWCC | 2 cut(s) | 72, 3558 |
| Eco52I | CGGCCG | 1 cut(s) | 2995 |
| Eco53kI | GAGCTC | 2 cut(s) | 250, 2831 |
| Eco57I | CTGAAG | 9 cut(s) | 648, 700, 1355, 1455, 1533, 1619, 1629, 1712, 1761 |
| Eco88I | CYCGRG | 3 cut(s) | 681, 1022, 2497 |
| EcoICRI | GAGCTC | 2 cut(s) | 250, 2831 |
| EcoRI | GAATTC | 1 cut(s) | 828 |
| EcoRII | CCWGG | 5 cut(s) | 1119, 1428, 1817, 3118, 3526 |
| EcoT14I | CCWWGG | 5 cut(s) | 441, 816, 1173, 2426, 2941 |
| EcoT38I | GRGCYC | 2 cut(s) | 252, 2833 |
| ErhI | CCWWGG | 5 cut(s) | 441, 816, 1173, 2426, 2941 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2623, 2655 |
| FaqI | GGGAC | 1 cut(s) | 2735 |
| FauI | CCCGC | 1 cut(s) | 151 |
| FauNDI | CATATG | 1 cut(s) | 1839 |
| FblI | GTMKAC | 1 cut(s) | 3441 |
| FokI | GGATG | 6 cut(s) | 113, 1103, 1136, 1673, 2563, 3510 |
| FriOI | GRGCYC | 2 cut(s) | 252, 2833 |
| GlaI | GCGC | 4 cut(s) | 208, 2993, 3001, 3077 |
| GsaI | CCCAGC | 2 cut(s) | 2350, 3076 |
| GsuI | CTGGAG | 3 cut(s) | 1973, 2418, 3177 |
| HaeIII | GGCC | 7 cut(s) | 219, 440, 542, 822, 1817, 2815, 2997 |
| HgaI | GACGC | 1 cut(s) | 157 |
| HhaI | GCGC | 4 cut(s) | 209, 2994, 3002, 3078 |
| Hin1I | GRCGYC | 2 cut(s) | 149, 333 |
| Hin6I | GCGC | 4 cut(s) | 207, 2992, 3000, 3076 |
| HinP1I | GCGC | 4 cut(s) | 207, 2992, 3000, 3076 |
| HincII | GTYRAC | 1 cut(s) | 3442 |
| HindII | GTYRAC | 1 cut(s) | 3442 |
| HindIII | AAGCTT | 2 cut(s) | 620, 1094 |
| HphI | GGTGA | 6 cut(s) | 1715, 2291, 2570, 3047, 3365, 3418 |
| Hpy166II | GTNNAC | 8 cut(s) | 6, 130, 315, 522, 692, 1706, 2824, 3442 |
| Hpy8I | GTNNAC | 8 cut(s) | 6, 130, 315, 522, 692, 1706, 2824, 3442 |
| Hpy99I | CGWCG | 4 cut(s) | 151, 2793, 2927, 3446 |
| HpyCH4III | ACNGT | 4 cut(s) | 18, 2732, 2888, 2903 |
| HpyCH4IV | ACGT | 2 cut(s) | 333, 2925 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 362, 560, 614, 623, 1630, 1871, 1948, 3179, 3266 |
| HpySE526I | ACGT | 2 cut(s) | 333, 2925 |
| Hsp92I | GRCGYC | 2 cut(s) | 149, 333 |
| HspAI | GCGC | 4 cut(s) | 207, 2992, 3000, 3076 |
| MaeII | ACGT | 2 cut(s) | 333, 2925 |
| MaeIII | GTNAC | 3 cut(s) | 1041, 1399, 1507 |
| MflI | RGATCY | 5 cut(s) | 892, 1086, 1495, 1804, 2613 |
| MhlI | GDGCHC | 5 cut(s) | 82, 252, 694, 2524, 2833 |
| MlsI | TGGCCA | 1 cut(s) | 1817 |
| MluNI | TGGCCA | 1 cut(s) | 1817 |
| MlyI | GAGTC | 5 cut(s) | 686, 1832, 2815, 3168, 3325 |
| MmeI | TCCRAC | 1 cut(s) | 1128 |
| Mox20I | TGGCCA | 1 cut(s) | 1817 |
| MroXI | GAANNNNTTC | 3 cut(s) | 2691, 3096, 3114 |
| MscI | TGGCCA | 1 cut(s) | 1817 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2924, 3062 |
| Msp20I | TGGCCA | 1 cut(s) | 1817 |
| MspA1I | CMGCKG | 1 cut(s) | 1471 |
| MvaI | CCWGG | 5 cut(s) | 1121, 1430, 1819, 3120, 3528 |
| MvnI | CGCG | 5 cut(s) | 146, 222, 2994, 3000, 3189 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 362, 560, 614, 623, 1630, 1871, 1948, 3179, 3266 |
| NciI | CCSGG | 7 cut(s) | 49, 70, 97, 2498, 2499, 2556, 3469 |
| NdeI | CATATG | 1 cut(s) | 1839 |
| NheI | GCTAGC | 3 cut(s) | 811, 970, 3290 |
| NlaIV | GGNNCC | 8 cut(s) | 67, 73, 163, 1427, 2547, 2739, 2950, 3070 |
| NmeAIII | GCCGAG | 2 cut(s) | 568, 2376 |
| NotI | GCGGCCGC | 1 cut(s) | 2995 |
| NspI | RCATGY | 1 cut(s) | 1739 |
| NspV | TTCGAA | 2 cut(s) | 267, 697 |
| PaeR7I | CTCGAG | 2 cut(s) | 681, 1022 |
| PagI | TCATGA | 1 cut(s) | 1900 |
| PceI | AGGCCT | 2 cut(s) | 440, 2815 |
| PdmI | GAANNNNTTC | 3 cut(s) | 2691, 3096, 3114 |
| PflFI | GACNNNGTC | 1 cut(s) | 3059 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2441 |
| PfoI | TCCNGGA | 1 cut(s) | 1119 |
| PleI | GAGTC | 5 cut(s) | 685, 1831, 2814, 3167, 3325 |
| PpsI | GAGTC | 5 cut(s) | 685, 1831, 2814, 3167, 3325 |
| Psp124BI | GAGCTC | 2 cut(s) | 252, 2833 |
| Psp6I | CCWGG | 5 cut(s) | 1119, 1428, 1817, 3118, 3526 |
| PspFI | CCCAGC | 2 cut(s) | 2346, 3072 |
| PspGI | CCWGG | 5 cut(s) | 1119, 1428, 1817, 3118, 3526 |
| PspN4I | GGNNCC | 8 cut(s) | 67, 73, 163, 1427, 2547, 2739, 2950, 3070 |
| PspPI | GGNCC | 3 cut(s) | 72, 820, 3558 |
| PstI | CTGCAG | 2 cut(s) | 1476, 2911 |
| PstNI | CAGNNNCTG | 3 cut(s) | 215, 1270, 2441 |
| PsuI | RGATCY | 5 cut(s) | 892, 1086, 1495, 1804, 2613 |
| PsyI | GACNNNGTC | 1 cut(s) | 3059 |
| PvuII | CAGCTG | 1 cut(s) | 1471 |
| RsaI | GTAC | 5 cut(s) | 278, 1574, 2905, 3134, 3232 |
| RsaNI | GTAC | 5 cut(s) | 277, 1573, 2904, 3133, 3231 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2924, 3062 |
| SacI | GAGCTC | 2 cut(s) | 252, 2833 |
| SalI | GTCGAC | 1 cut(s) | 3440 |
| Sau96I | GGNCC | 3 cut(s) | 72, 820, 3558 |
| SchI | GAGTC | 5 cut(s) | 686, 1832, 2815, 3168, 3325 |
| SduI | GDGCHC | 5 cut(s) | 82, 252, 694, 2524, 2833 |
| SfcI | CTRYAG | 2 cut(s) | 1472, 2907 |
| Sfr274I | CTCGAG | 2 cut(s) | 681, 1022 |
| SfuI | TTCGAA | 2 cut(s) | 267, 697 |
| SinI | GGWCC | 2 cut(s) | 72, 3558 |
| SlaI | CTCGAG | 2 cut(s) | 681, 1022 |
| SmaI | CCCGGG | 1 cut(s) | 2499 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2924, 3062 |
| SmlI | CTYRAG | 5 cut(s) | 170, 681, 1022, 2035, 2258 |
| SmoI | CTYRAG | 5 cut(s) | 170, 681, 1022, 2035, 2258 |
| SpeI | ACTAGT | 1 cut(s) | 1396 |
| SseBI | AGGCCT | 2 cut(s) | 440, 2815 |
| SstI | GAGCTC | 2 cut(s) | 252, 2833 |
| StuI | AGGCCT | 2 cut(s) | 440, 2815 |
| StyI | CCWWGG | 5 cut(s) | 441, 816, 1173, 2426, 2941 |
| TaaI | ACNGT | 4 cut(s) | 18, 2732, 2888, 2903 |
| TaiI | ACGT | 2 cut(s) | 336, 2928 |
| TaqII | GACCGA | 1 cut(s) | 3163 |
| TatI | WGTACW | 2 cut(s) | 276, 1572 |
| TauI | GCSGC | 6 cut(s) | 13, 207, 222, 1775, 2997, 3000 |
| TscAI | CASTG | 6 cut(s) | 220, 942, 2602, 2737, 2893, 3246 |
| TspGWI | ACGGA | 3 cut(s) | 1930, 3001, 3459 |
| TspMI | CCCGGG | 1 cut(s) | 2497 |
| TspRI | CASTG | 6 cut(s) | 220, 942, 2602, 2737, 2893, 3246 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3059 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2441 |
| VneI | GTGCAC | 1 cut(s) | 690 |
| VpaK11BI | GGWCC | 2 cut(s) | 72, 3558 |
| XapI | RAATTY | 5 cut(s) | 492, 828, 1139, 1904, 2530 |
| XbaI | TCTAGA | 1 cut(s) | 472 |
| XceI | RCATGY | 1 cut(s) | 1739 |
| XhoI | CTCGAG | 2 cut(s) | 681, 1022 |
| XmaI | CCCGGG | 1 cut(s) | 2497 |
| XmiI | GTMKAC | 1 cut(s) | 3441 |
| XmnI | GAANNNNTTC | 3 cut(s) | 2691, 3096, 3114 |
| ZraI | GACGTC | 1 cut(s) | 334 |