Nuclear matrix constituent protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G67230 |
| fragaria_vesca | FvH4_6g45461 FvH4_6g45461 FvH4_6g45461 FvH4_6g45461 FvH4_6g45461 |
| malus_domestica | MD09G1082900.v1.1 |
| prunus_persica | Prupe.3G240800_v2.0.a1 |
| pyrus_communis | pycom09g00940 |
| rosa_chinensis | RchiOBHm_Chr2g0163401 |
| rosa_laevigata | RLG00000021390 |
| rosa_roxburghii | Rroxscaffold_2G00087370 |
| rosa_rugosa | Rorug02G0502200 Rorug02G0502300 |
| rosa_samantha | Rh2AG569300 Rh2BG581400 Rh2CG551200 Rh2DG591300 |
| rosa_wichuraiana | Rw2G047110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 302 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2447 |
| AccI | GTMKAC | 2 cut(s) | 1768, 2930 |
| AccIII | TCCGGA | 1 cut(s) | 3144 |
| AclWI | GGATC | 5 cut(s) | 469, 684, 882, 1063, 3144 |
| AcoI | YGGCCR | 4 cut(s) | 732, 2692, 2995, 3073 |
| AcsI | RAATTY | 5 cut(s) | 91, 409, 724, 1886, 3373 |
| AcuI | CTGAAG | 6 cut(s) | 630, 1611, 1694, 2328, 2334, 2688 |
| AcvI | CACGTG | 2 cut(s) | 2789, 3467 |
| AcyI | GRCGYC | 3 cut(s) | 38, 158, 299 |
| AdeI | CACNNNGTG | 1 cut(s) | 3319 |
| AfaI | GTAC | 2 cut(s) | 1556, 3137 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 47, 48, 69, 167, 741, 826, 2447, 3420 |
| AflII | CTTAAG | 1 cut(s) | 2017 |
| AjnI | CCWGG | 5 cut(s) | 1800, 2382, 2419, 2500, 3523 |
| AleI | CACNNNNGTG | 1 cut(s) | 2721 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 77, 109 |
| Alw21I | GWGCWC | 5 cut(s) | 234, 1657, 2477, 2527, 3004 |
| Alw26I | GTCTC | 4 cut(s) | 36, 2077, 2421, 3190 |
| Alw44I | GTGCAC | 1 cut(s) | 2473 |
| AlwI | GGATC | 5 cut(s) | 469, 684, 882, 1063, 3144 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2447 |
| Ama87I | CYCGRG | 2 cut(s) | 317, 663 |
| Aor13HI | TCCGGA | 1 cut(s) | 3144 |
| AoxI | GGCC | 9 cut(s) | 420, 732, 1311, 1797, 2692, 2802, 2995, 3073, 3531 |
| ApaLI | GTGCAC | 1 cut(s) | 2473 |
| ApoI | RAATTY | 5 cut(s) | 91, 409, 724, 1886, 3373 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 148, 180 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1854, 1878, 3099 |
| AspLEI | GCGC | 1 cut(s) | 3081 |
| AspS9I | GGNCC | 4 cut(s) | 1798, 2326, 2802, 2904 |
| AsuC2I | CCSGG | 2 cut(s) | 49, 203 |
| AsuHPI | GGTGA | 3 cut(s) | 197, 2273, 3539 |
| AsuII | TTCGAA | 2 cut(s) | 515, 679 |
| AsuNHI | GCTAGC | 3 cut(s) | 545, 793, 952 |
| AvaI | CYCGRG | 2 cut(s) | 317, 663 |
| AvaII | GGWCC | 2 cut(s) | 2326, 2904 |
| BaeGI | GKGCMC | 2 cut(s) | 676, 2477 |
| BalI | TGGCCA | 2 cut(s) | 734, 2694 |
| BanII | GRGCYC | 2 cut(s) | 234, 1657 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1437, 1469, 2354, 2386 |
| BbrPI | CACGTG | 2 cut(s) | 2789, 3467 |
| BbsI | GAAGAC | 2 cut(s) | 65, 888 |
| Bbv12I | GWGCWC | 5 cut(s) | 234, 1657, 2477, 2527, 3004 |
| BbvCI | CCTCAGC | 1 cut(s) | 2910 |
| BccI | CCATC | 5 cut(s) | 2144, 2587, 3344, 3356, 3434 |
| BceAI | ACGGC | 1 cut(s) | 2982 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2504, 2538 |
| BciT130I | CCWGG | 5 cut(s) | 1802, 2384, 2421, 2502, 3525 |
| BclI | TGATCA | 1 cut(s) | 1138 |
| BcnI | CCSGG | 2 cut(s) | 49, 203 |
| BcoDI | GTCTC | 4 cut(s) | 36, 2077, 2421, 3190 |
| BfmI | CTRYAG | 2 cut(s) | 1454, 3105 |
| BfrI | CTTAAG | 1 cut(s) | 2017 |
| BglII | AGATCT | 1 cut(s) | 1786 |
| BlpI | GCTNAGC | 1 cut(s) | 3111 |
| Bme1390I | CCNGG | 7 cut(s) | 49, 203, 1802, 2384, 2421, 2502, 3525 |
| Bme18I | GGWCC | 2 cut(s) | 2326, 2904 |
| BmeT110I | CYCGRG | 2 cut(s) | 317, 663 |
| BmgT120I | GGNCC | 4 cut(s) | 1798, 2326, 2802, 2904 |
| BmiI | GGNNCC | 2 cut(s) | 2905, 3412 |
| BmrFI | CCNGG | 7 cut(s) | 49, 203, 1802, 2384, 2421, 2502, 3525 |
| BmrI | ACTGGG | 1 cut(s) | 78 |
| BmtI | GCTAGC | 3 cut(s) | 549, 797, 956 |
| BmuI | ACTGGG | 1 cut(s) | 78 |
| BpiI | GAAGAC | 2 cut(s) | 65, 888 |
| BpmI | CTGGAG | 2 cut(s) | 2424, 2484 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1274, 2850, 2910 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3111 |
| Bpu14I | TTCGAA | 2 cut(s) | 515, 679 |
| BpuEI | CTTGAG | 3 cut(s) | 1191, 2997, 3330 |
| BpuMI | CCSGG | 2 cut(s) | 49, 203 |
| Bsa29I | ATCGAT | 1 cut(s) | 900 |
| BsaAI | YACGTR | 2 cut(s) | 2789, 3467 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3480 |
| BsaHI | GRCGYC | 3 cut(s) | 38, 158, 299 |
| BsaI | GGTCTC | 1 cut(s) | 36 |
| BsaJI | CCNNGG | 5 cut(s) | 48, 423, 1794, 1800, 2501 |
| BsaWI | WCCGGW | 2 cut(s) | 62, 3144 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 284, 314, 1007, 1037 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 47, 48, 69, 167, 741, 826, 2447, 3420 |
| Bse118I | RCCGGY | 2 cut(s) | 160, 3071 |
| Bse1I | ACTGG | 2 cut(s) | 73, 2441 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3480 |
| BseAI | TCCGGA | 1 cut(s) | 3144 |
| BseBI | CCWGG | 5 cut(s) | 1802, 2384, 2421, 2502, 3525 |
| BseCI | ATCGAT | 1 cut(s) | 900 |
| BseDI | CCNNGG | 5 cut(s) | 48, 423, 1794, 1800, 2501 |
| BseGI | GGATG | 6 cut(s) | 1165, 1648, 2579, 3046, 3481, 3520 |
| BseJI | GATNNNNATC | 1 cut(s) | 3480 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 47, 48, 69, 167, 741, 826, 2447, 3420 |
| BseNI | ACTGG | 2 cut(s) | 73, 2441 |
| BseRI | GAGGAG | 8 cut(s) | 137, 419, 842, 1238, 1361, 1484, 1952, 3461 |
| BseSI | GKGCMC | 2 cut(s) | 676, 2477 |
| BsgI | GTGCAG | 2 cut(s) | 2669, 3378 |
| Bsh1285I | CGRYCG | 1 cut(s) | 202 |
| BshFI | GGCC | 9 cut(s) | 422, 734, 1313, 1799, 2694, 2804, 2997, 3075, 3533 |
| BshVI | ATCGAT | 1 cut(s) | 900 |
| BsiEI | CGRYCG | 1 cut(s) | 202 |
| BsiHKAI | GWGCWC | 5 cut(s) | 234, 1657, 2477, 2527, 3004 |
| BsiHKCI | CYCGRG | 2 cut(s) | 317, 663 |
| BslFI | GGGAC | 3 cut(s) | 91, 2917, 3343 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 47, 48, 69, 167, 741, 826, 2447, 3420 |
| BsmAI | GTCTC | 4 cut(s) | 36, 2077, 2421, 3190 |
| BsmFI | GGGAC | 3 cut(s) | 91, 2917, 3343 |
| BsnI | GGCC | 9 cut(s) | 422, 734, 1313, 1799, 2694, 2804, 2997, 3075, 3533 |
| Bso31I | GGTCTC | 1 cut(s) | 36 |
| BsoBI | CYCGRG | 2 cut(s) | 317, 663 |
| Bsp119I | TTCGAA | 2 cut(s) | 515, 679 |
| Bsp1286I | GDGCHC | 6 cut(s) | 234, 676, 1657, 2477, 2527, 3004 |
| Bsp13I | TCCGGA | 1 cut(s) | 3144 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3111 |
| BspANI | GGCC | 9 cut(s) | 422, 734, 1313, 1799, 2694, 2804, 2997, 3075, 3533 |
| BspDI | ATCGAT | 1 cut(s) | 900 |
| BspEI | TCCGGA | 1 cut(s) | 3144 |
| BspHI | TCATGA | 2 cut(s) | 1882, 3066 |
| BspLI | GGNNCC | 2 cut(s) | 2905, 3412 |
| BspMAI | CTGCAG | 1 cut(s) | 3109 |
| BspOI | GCTAGC | 3 cut(s) | 549, 797, 956 |
| BspPI | GGATC | 5 cut(s) | 469, 684, 882, 1063, 3144 |
| BspQI | GCTCTTC | 1 cut(s) | 1629 |
| BspT104I | TTCGAA | 2 cut(s) | 515, 679 |
| BspTI | CTTAAG | 1 cut(s) | 2017 |
| BspTNI | GGTCTC | 1 cut(s) | 36 |
| BsrFI | RCCGGY | 2 cut(s) | 160, 3071 |
| BsrI | ACTGG | 2 cut(s) | 73, 2441 |
| BssAI | RCCGGY | 2 cut(s) | 160, 3071 |
| BssECI | CCNNGG | 5 cut(s) | 48, 423, 1794, 1800, 2501 |
| BssNAI | GTATAC | 2 cut(s) | 1769, 2931 |
| BssNI | GRCGYC | 3 cut(s) | 38, 158, 299 |
| BssT1I | CCWWGG | 2 cut(s) | 423, 1794 |
| Bst1107I | GTATAC | 2 cut(s) | 1769, 2931 |
| Bst2UI | CCWGG | 5 cut(s) | 1802, 2384, 2421, 2502, 3525 |
| Bst6I | CTCTTC | 8 cut(s) | 676, 780, 1494, 1629, 1670, 2029, 3080, 3207 |
| BstACI | GRCGYC | 3 cut(s) | 38, 158, 299 |
| BstAFI | CTTAAG | 1 cut(s) | 2017 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 344, 445 |
| BstBAI | YACGTR | 2 cut(s) | 2789, 3467 |
| BstBI | TTCGAA | 2 cut(s) | 515, 679 |
| BstF5I | GGATG | 6 cut(s) | 1165, 1648, 2579, 3046, 3481, 3520 |
| BstHHI | GCGC | 1 cut(s) | 3081 |
| BstMAI | GTCTC | 4 cut(s) | 36, 2077, 2421, 3190 |
| BstMCI | CGRYCG | 1 cut(s) | 202 |
| BstNI | CCWGG | 5 cut(s) | 1802, 2384, 2421, 2502, 3525 |
| BstNSI | RCATGY | 3 cut(s) | 1109, 1561, 2597 |
| BstSCI | CCNGG | 7 cut(s) | 47, 201, 1800, 2382, 2419, 2500, 3523 |
| BstSFI | CTRYAG | 2 cut(s) | 1454, 3105 |
| BstSLI | GKGCMC | 2 cut(s) | 676, 2477 |
| BstV2I | GAAGAC | 2 cut(s) | 65, 888 |
| BstX2I | RGATCY | 6 cut(s) | 474, 689, 874, 1068, 1786, 3149 |
| BstYI | RGATCY | 6 cut(s) | 474, 689, 874, 1068, 1786, 3149 |
| BstZ17I | GTATAC | 2 cut(s) | 1769, 2931 |
| Bsu15I | ATCGAT | 1 cut(s) | 900 |
| BsuRI | GGCC | 9 cut(s) | 422, 734, 1313, 1799, 2694, 2804, 2997, 3075, 3533 |
| BsuTUI | ATCGAT | 1 cut(s) | 900 |
| BtsCI | GGATG | 6 cut(s) | 1165, 1648, 2579, 3046, 3481, 3520 |
| BtsI | GCAGTG | 2 cut(s) | 446, 3399 |
| BtsIMutI | CAGTG | 8 cut(s) | 446, 917, 1121, 1471, 1517, 2728, 3067, 3399 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2447 |
| CciI | TCATGA | 2 cut(s) | 1882, 3066 |
| CfoI | GCGC | 1 cut(s) | 3081 |
| Cfr10I | RCCGGY | 2 cut(s) | 160, 3071 |
| Cfr13I | GGNCC | 4 cut(s) | 1798, 2326, 2802, 2904 |
| ClaI | ATCGAT | 1 cut(s) | 900 |
| CseI | GACGC | 3 cut(s) | 46, 166, 893 |
| Csp6I | GTAC | 2 cut(s) | 1555, 3136 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3142, 3177 |
| CviQI | GTAC | 2 cut(s) | 1555, 3136 |
| DraI | TTTAAA | 1 cut(s) | 969 |
| DraIII | CACNNNGTG | 1 cut(s) | 3319 |
| EaeI | YGGCCR | 4 cut(s) | 732, 2692, 2995, 3073 |
| Eam1104I | CTCTTC | 8 cut(s) | 676, 780, 1494, 1629, 1670, 2029, 3080, 3207 |
| EarI | CTCTTC | 8 cut(s) | 676, 780, 1494, 1629, 1670, 2029, 3080, 3207 |
| EciI | GGCGGA | 2 cut(s) | 2624, 3257 |
| Ecl136II | GAGCTC | 2 cut(s) | 232, 1655 |
| Eco130I | CCWWGG | 2 cut(s) | 423, 1794 |
| Eco147I | AGGCCT | 3 cut(s) | 422, 1313, 3533 |
| Eco24I | GRGCYC | 2 cut(s) | 234, 1657 |
| Eco31I | GGTCTC | 1 cut(s) | 36 |
| Eco47I | GGWCC | 2 cut(s) | 2326, 2904 |
| Eco53kI | GAGCTC | 2 cut(s) | 232, 1655 |
| Eco57I | CTGAAG | 6 cut(s) | 630, 1611, 1694, 2328, 2334, 2688 |
| Eco72I | CACGTG | 2 cut(s) | 2789, 3467 |
| Eco88I | CYCGRG | 2 cut(s) | 317, 663 |
| EcoICRI | GAGCTC | 2 cut(s) | 232, 1655 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2326 |
| EcoRI | GAATTC | 2 cut(s) | 91, 724 |
| EcoRII | CCWGG | 5 cut(s) | 1800, 2382, 2419, 2500, 3523 |
| EcoT14I | CCWWGG | 2 cut(s) | 423, 1794 |
| EcoT38I | GRGCYC | 2 cut(s) | 234, 1657 |
| ErhI | CCWWGG | 2 cut(s) | 423, 1794 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 949, 981, 1560, 1592, 2623, 2655 |
| FaqI | GGGAC | 3 cut(s) | 91, 2917, 3343 |
| FauNDI | CATATG | 2 cut(s) | 1821, 2227 |
| FbaI | TGATCA | 1 cut(s) | 1138 |
| FblI | GTMKAC | 2 cut(s) | 1768, 2930 |
| FokI | GGATG | 6 cut(s) | 1172, 1655, 2566, 3053, 3488, 3507 |
| FriOI | GRGCYC | 2 cut(s) | 234, 1657 |
| GlaI | GCGC | 1 cut(s) | 3080 |
| GsuI | CTGGAG | 2 cut(s) | 2424, 2484 |
| HaeIII | GGCC | 9 cut(s) | 422, 734, 1313, 1799, 2694, 2804, 2997, 3075, 3533 |
| HgaI | GACGC | 3 cut(s) | 46, 166, 893 |
| HhaI | GCGC | 1 cut(s) | 3081 |
| Hin1I | GRCGYC | 3 cut(s) | 38, 158, 299 |
| Hin6I | GCGC | 1 cut(s) | 3079 |
| HinP1I | GCGC | 1 cut(s) | 3079 |
| HincII | GTYRAC | 1 cut(s) | 2812 |
| HindII | GTYRAC | 1 cut(s) | 2812 |
| HpaI | GTTAAC | 1 cut(s) | 2812 |
| HphI | GGTGA | 3 cut(s) | 197, 2273, 3539 |
| Hpy166II | GTNNAC | 8 cut(s) | 6, 297, 504, 1769, 2475, 2812, 2931, 3050 |
| Hpy8I | GTNNAC | 8 cut(s) | 6, 297, 504, 1769, 2475, 2812, 2931, 3050 |
| Hpy99I | CGWCG | 2 cut(s) | 85, 160 |
| HpyCH4IV | ACGT | 3 cut(s) | 299, 2788, 3466 |
| HpySE526I | ACGT | 3 cut(s) | 299, 2788, 3466 |
| Hsp92I | GRCGYC | 3 cut(s) | 38, 158, 299 |
| HspAI | GCGC | 1 cut(s) | 3079 |
| Kpn2I | TCCGGA | 1 cut(s) | 3144 |
| KroI | GCCGGC | 1 cut(s) | 160 |
| KroNI | GCCGGC | 1 cut(s) | 162 |
| Ksp22I | TGATCA | 1 cut(s) | 1138 |
| KspAI | GTTAAC | 1 cut(s) | 2812 |
| LguI | GCTCTTC | 1 cut(s) | 1629 |
| LmnI | GCTCC | 8 cut(s) | 229, 279, 1243, 1423, 1612, 1825, 2107, 3271 |
| MaeII | ACGT | 3 cut(s) | 299, 2788, 3466 |
| MaeIII | GTNAC | 8 cut(s) | 1023, 1078, 1231, 1377, 1506, 2261, 2369, 2589 |
| MflI | RGATCY | 6 cut(s) | 474, 689, 874, 1068, 1786, 3149 |
| MhlI | GDGCHC | 6 cut(s) | 234, 676, 1657, 2477, 2527, 3004 |
| MlsI | TGGCCA | 2 cut(s) | 734, 2694 |
| MluNI | TGGCCA | 2 cut(s) | 734, 2694 |
| MlyI | GAGTC | 3 cut(s) | 2525, 3325, 3521 |
| MmeI | TCCRAC | 4 cut(s) | 222, 1110, 1137, 1923 |
| Mox20I | TGGCCA | 2 cut(s) | 734, 2694 |
| MroI | TCCGGA | 1 cut(s) | 3144 |
| MroNI | GCCGGC | 1 cut(s) | 160 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1854, 1878, 3099 |
| MscI | TGGCCA | 2 cut(s) | 734, 2694 |
| MseI | TTAA | 9 cut(s) | 498, 968, 1338, 1580, 2010, 2018, 2067, 2202, 2811 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2721, 3525 |
| Msp20I | TGGCCA | 2 cut(s) | 734, 2694 |
| MspA1I | CMGCKG | 5 cut(s) | 16, 1519, 2708, 2909, 3110 |
| MspCI | CTTAAG | 1 cut(s) | 2017 |
| MspR9I | CCNGG | 7 cut(s) | 49, 203, 1802, 2384, 2421, 2502, 3525 |
| MvaI | CCWGG | 5 cut(s) | 1802, 2384, 2421, 2502, 3525 |
| NaeI | GCCGGC | 1 cut(s) | 162 |
| NciI | CCSGG | 2 cut(s) | 49, 203 |
| NdeI | CATATG | 2 cut(s) | 1821, 2227 |
| NgoMIV | GCCGGC | 1 cut(s) | 160 |
| NheI | GCTAGC | 3 cut(s) | 545, 793, 952 |
| NlaIV | GGNNCC | 2 cut(s) | 2905, 3412 |
| NmuCI | GTSAC | 3 cut(s) | 1231, 1506, 2261 |
| NspI | RCATGY | 3 cut(s) | 1109, 1561, 2597 |
| NspV | TTCGAA | 2 cut(s) | 515, 679 |
| OliI | CACNNNNGTG | 1 cut(s) | 2721 |
| PaeI | GCATGC | 1 cut(s) | 1109 |
| PaeR7I | CTCGAG | 1 cut(s) | 663 |
| PagI | TCATGA | 2 cut(s) | 1882, 3066 |
| PceI | AGGCCT | 3 cut(s) | 422, 1313, 3533 |
| PciSI | GCTCTTC | 1 cut(s) | 1629 |
| PdiI | GCCGGC | 1 cut(s) | 162 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1854, 1878, 3099 |
| PflFI | GACNNNGTC | 3 cut(s) | 2515, 3062, 3197 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2447 |
| PleI | GAGTC | 3 cut(s) | 2524, 3325, 3520 |
| PmaCI | CACGTG | 2 cut(s) | 2789, 3467 |
| PmlI | CACGTG | 2 cut(s) | 2789, 3467 |
| PpsI | GAGTC | 3 cut(s) | 2524, 3325, 3520 |
| Ppu21I | YACGTR | 2 cut(s) | 2789, 3467 |
| PpuMI | RGGWCCY | 1 cut(s) | 2326 |
| Psp124BI | GAGCTC | 2 cut(s) | 234, 1657 |
| Psp5II | RGGWCCY | 1 cut(s) | 2326 |
| Psp6I | CCWGG | 5 cut(s) | 1800, 2382, 2419, 2500, 3523 |
| PspCI | CACGTG | 2 cut(s) | 2789, 3467 |
| PspGI | CCWGG | 5 cut(s) | 1800, 2382, 2419, 2500, 3523 |
| PspN4I | GGNNCC | 2 cut(s) | 2905, 3412 |
| PspPI | GGNCC | 4 cut(s) | 1798, 2326, 2802, 2904 |
| PspPPI | RGGWCCY | 1 cut(s) | 2326 |
| PstI | CTGCAG | 1 cut(s) | 3109 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2447 |
| PsuI | RGATCY | 6 cut(s) | 474, 689, 874, 1068, 1786, 3149 |
| PsyI | GACNNNGTC | 3 cut(s) | 2515, 3062, 3197 |
| PvuII | CAGCTG | 2 cut(s) | 2708, 3110 |
| RsaI | GTAC | 2 cut(s) | 1556, 3137 |
| RsaNI | GTAC | 2 cut(s) | 1555, 3136 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2721, 3525 |
| SacI | GAGCTC | 2 cut(s) | 234, 1657 |
| SapI | GCTCTTC | 1 cut(s) | 1629 |
| SaqAI | TTAA | 9 cut(s) | 498, 968, 1338, 1580, 2010, 2018, 2067, 2202, 2811 |
| Sau96I | GGNCC | 4 cut(s) | 1798, 2326, 2802, 2904 |
| SchI | GAGTC | 3 cut(s) | 2525, 3325, 3521 |
| ScrFI | CCNGG | 7 cut(s) | 49, 203, 1802, 2384, 2421, 2502, 3525 |
| SduI | GDGCHC | 6 cut(s) | 234, 676, 1657, 2477, 2527, 3004 |
| SfcI | CTRYAG | 2 cut(s) | 1454, 3105 |
| Sfr274I | CTCGAG | 1 cut(s) | 663 |
| SfuI | TTCGAA | 2 cut(s) | 515, 679 |
| SinI | GGWCC | 2 cut(s) | 2326, 2904 |
| SlaI | CTCGAG | 1 cut(s) | 663 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2721, 3525 |
| SmlI | CTYRAG | 5 cut(s) | 663, 1206, 2017, 3012, 3345 |
| SmoI | CTYRAG | 5 cut(s) | 663, 1206, 2017, 3012, 3345 |
| SphI | GCATGC | 1 cut(s) | 1109 |
| SseBI | AGGCCT | 3 cut(s) | 422, 1313, 3533 |
| SstI | GAGCTC | 2 cut(s) | 234, 1657 |
| StuI | AGGCCT | 3 cut(s) | 422, 1313, 3533 |
| StyD4I | CCNGG | 7 cut(s) | 47, 201, 1800, 2382, 2419, 2500, 3523 |
| StyI | CCWWGG | 2 cut(s) | 423, 1794 |
| TaiI | ACGT | 3 cut(s) | 302, 2791, 3469 |
| TaqII | GACCGA | 1 cut(s) | 2528 |
| TatI | WGTACW | 1 cut(s) | 1554 |
| TauI | GCSGC | 5 cut(s) | 13, 194, 1757, 1817, 1933 |
| Tru1I | TTAA | 9 cut(s) | 498, 968, 1338, 1580, 2010, 2018, 2067, 2202, 2811 |
| Tru9I | TTAA | 9 cut(s) | 498, 968, 1338, 1580, 2010, 2018, 2067, 2202, 2811 |
| TscAI | CASTG | 8 cut(s) | 446, 924, 1121, 1471, 1517, 2728, 3067, 3399 |
| TseFI | GTSAC | 3 cut(s) | 1231, 1506, 2261 |
| Tsp45I | GTSAC | 3 cut(s) | 1231, 1506, 2261 |
| TspGWI | ACGGA | 3 cut(s) | 467, 3001, 3251 |
| TspRI | CASTG | 8 cut(s) | 446, 924, 1121, 1471, 1517, 2728, 3067, 3399 |
| Tth111I | GACNNNGTC | 3 cut(s) | 2515, 3062, 3197 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2447 |
| Vha464I | CTTAAG | 1 cut(s) | 2017 |
| VneI | GTGCAC | 1 cut(s) | 2473 |
| VpaK11BI | GGWCC | 2 cut(s) | 2326, 2904 |
| XapI | RAATTY | 5 cut(s) | 91, 409, 724, 1886, 3373 |
| XbaI | TCTAGA | 1 cut(s) | 454 |
| XceI | RCATGY | 3 cut(s) | 1109, 1561, 2597 |
| XhoI | CTCGAG | 1 cut(s) | 663 |
| XmiI | GTMKAC | 2 cut(s) | 1768, 2930 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1854, 1878, 3099 |
| ZraI | GACGTC | 1 cut(s) | 300 |