Prupe.3G242400_v2.0.a1

Protein trichome birefringence-like 19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0013701
Physical Location & Seq
Reverse (-)
23531680 .. 23533164
1485 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G242400.1

Sequence Viewer

Length: 1263 bp
ATGAAGTTTCATGCCATTGATCTCATTAATGGAAAATACACACAACCCAACAACAGCCACAAAAATATTTTTCTGCTAGCCCTTACCTTAGTTCTGCTCACTACAATCCCTCTCTGTCTAAACAACATCTCAAATTCCCCATTGCCGTCTCCTAAGAACAATGCCGGCGGTTCAAAAAGCATCGAAAAAGAAGATCAATGCCAAATATTTAGTGGGAACTGGGTTCCATGTCCTGATGGACCTGCTTACTACACAAATGAAACTTGCAATCTGATCATTGATGAGCAAAACTGCATGAAGTTTGGGAGACCTGATACGGAGTTCATGAAATGGAGGTGGAAGCCTGATGCTTGTGAGTTGCCCTTGTTTGATGCAGCTCAGTTCTTGGAGCTTGTTAGAGGCAAGTCATTGGCTTTCCTTGGTGACTCTGTGGGAAAGAATCAAATGCAGTCATTGCTTTGCCTCTTAGCCATTGTGGCTTATCCTGAGGACATTTCTCATAAATATTCGTCAAACACAGATTACTTCAAGCGCTATGTCTACAATGATTACAATTTCACCATAGCAACTCTCTGGTCCCCCTACTTGGTTAAATCTAGAGACGCAGATCCTAGTGGACATGACATCAACAGCCTCATGAACCTCTACTTAGATGAGCCCGACCAGGCATGGCTAACTCAGGTCGAACAATTCGACTATGTGATCGTCTCAGCAGGACAATGGTTCTTCCGGCCACTAATGTACCATGAAAATGGTCGCGTTATCGGGTGTCACAAGTGCGAACAAGACAACATGACGTCGTTTGTCACCTCCTACGGATACAGAAAGGCCTTTCAAACGGTGTTTAGAACCCTTCGAAGCCTTAAAAACTACAAGGGGGTGACATTTCTGAGGACGTTTTCTCCCTCACACTTCGAAAACGGGGCATGGAACGAGGGAGGGAACTGTGTGAGGACAAGTCCTTTTACCAAAGAAGAAACGAAGCTAGATGGGTATGTTTTGGAAATGTACTTGACTCAAGTGGAGGAGCTAAAAGCAGCAGAAGAGCAAGGCCTGCAGAGAGGCCTGCAGTTTAGGTTGATGGACACAACAGAAGCTATGTTGCTGAGGCCTGATGGACACCCAAACTTCTATGGACACTCACCTCATAGGAATATGACTCTTGCCGACTGTGTTCACTGGTGCTTGCCAGGCCCCATTGATACGTGGAATGAGATCTTGCTGTCTATGTTGAAGACAGGGTACAGGCCATCTCGATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

421

Amino Acids

48.21

Weight (kDa)

6.02

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013701)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g45620
malus_domestica MD17G1072300.v1.1
prunus_persica Prupe.3G242400_v2.0.a1 Prupe.3G242900_v2.0.a1 Prupe.8G194900_v2.0.a1
pyrus_communis pycom09g00780 pycom17g07180 pycom17g07330
rosa_chinensis RchiOBHm_Chr2g0163771
rosa_laevigata RLG00000021414
rosa_multiflora Rmu_sc0004918.1_g000002
rosa_roxburghii Rroxscaffold_2G00087060
rosa_rugosa Rorug02G0504500
rosa_samantha Rh2AG572400 Rh2BG583000 Rh2CG553900 Rh2DG592700
rosa_wichuraiana Rw2G047310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1261
AatII GACGTC 1 cut(s) 800
Acc36I ACCTGC 1 cut(s) 250
AccI GTMKAC 1 cut(s) 540
AccII CGCG 1 cut(s) 759
AciI CCGC 1 cut(s) 168
AclWI GGATC 1 cut(s) 602
AcoI YGGCCR 1 cut(s) 731
AcsI RAATTY 1 cut(s) 133
AcyI GRCGYC 1 cut(s) 797
AfaI GTAC 3 cut(s) 743, 1010, 1244
AfeI AGCGCT 1 cut(s) 533
AfiI CCNNNNNNNGG 1 cut(s) 586
AgsI TTSAA 4 cut(s) 174, 529, 836, 1234
AjnI CCWGG 2 cut(s) 663, 1189
AluBI AGCT 5 cut(s) 377, 391, 985, 1030, 1097
AluI AGCT 5 cut(s) 377, 391, 985, 1030, 1097
Alw26I GTCTC 4 cut(s) 153, 301, 594, 712
AlwI GGATC 1 cut(s) 602
Aor51HI AGCGCT 1 cut(s) 533
AoxI GGCC 7 cut(s) 731, 828, 1051, 1063, 1109, 1192, 1247
ApeKI GCWGC 2 cut(s) 374, 1037
ApoI RAATTY 1 cut(s) 133
AseI ATTAAT 1 cut(s) 27
AspLEI GCGC 1 cut(s) 534
AspS9I GGNCC 3 cut(s) 239, 576, 1193
AsuHPI GGTGA 5 cut(s) 434, 550, 799, 892, 1134
AsuII TTCGAA 2 cut(s) 856, 915
AsuNHI GCTAGC 1 cut(s) 76
AvaII GGWCC 2 cut(s) 239, 576
AxyI CCTNAGG 1 cut(s) 486
BaeI ACNNNNGTAYC 2 cut(s) 725, 758
BanII GRGCYC 1 cut(s) 660
BarI GAAGNNNNNNTAC 2 cut(s) 1226, 1258
BbsI GAAGAC 1 cut(s) 1241
BbvCI CCTCAGC 1 cut(s) 1106
BbvI GCAGC 2 cut(s) 386, 1049
BccI CCATC 5 cut(s) 230, 983, 1075, 1109, 1258
BceAI ACGGC 1 cut(s) 130
BciT130I CCWGG 2 cut(s) 665, 1191
BciVI GTATCC 1 cut(s) 812
BclI TGATCA 1 cut(s) 273
BcoDI GTCTC 4 cut(s) 153, 301, 594, 712
BfaI CTAG 4 cut(s) 77, 597, 612, 986
BfmI CTRYAG 2 cut(s) 1055, 1067
BfoI RGCGCY 1 cut(s) 535
BfuAI ACCTGC 1 cut(s) 250
BfuI GTATCC 1 cut(s) 812
BglI GCCNNNNNGGC 1 cut(s) 476
BglII AGATCT 1 cut(s) 1215
BisI GCNGC 2 cut(s) 375, 1038
BlsI GCNGC 2 cut(s) 376, 1039
Bme1390I CCNGG 2 cut(s) 665, 1191
Bme18I GGWCC 2 cut(s) 239, 576
BmgT120I GGNCC 3 cut(s) 239, 576, 1193
BmiI GGNNCC 3 cut(s) 225, 578, 1195
BmrFI CCNGG 2 cut(s) 665, 1191
BmrI ACTGGG 1 cut(s) 229
BmsI GCATC 3 cut(s) 189, 337, 361
BmtI GCTAGC 1 cut(s) 80
BmuI ACTGGG 1 cut(s) 229
BpiI GAAGAC 1 cut(s) 1241
Bpu10I CCTNAGC 1 cut(s) 1106
Bpu14I TTCGAA 2 cut(s) 856, 915
BpuEI CTTGAG 1 cut(s) 1002
BsaAI YACGTR 1 cut(s) 1206
BsaHI GRCGYC 1 cut(s) 797
BsaI GGTCTC 1 cut(s) 301
BsaJI CCNNGG 1 cut(s) 418
BsaXI ACNNNNNCTCC 2 cut(s) 886, 916
Bsc4I CCNNNNNNNGG 1 cut(s) 586
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 2 cut(s) 224, 1184
Bse21I CCTNAGG 1 cut(s) 486
Bse3DI GCAATG 2 cut(s) 140, 452
BseBI CCWGG 2 cut(s) 665, 1191
BseDI CCNNGG 1 cut(s) 418
BseLI CCNNNNNNNGG 1 cut(s) 586
BseMI GCAATG 2 cut(s) 140, 452
BseMII CTCAG 6 cut(s) 392, 477, 692, 723, 881, 1097
BseNI ACTGG 2 cut(s) 224, 1184
BseRI GAGGAG 1 cut(s) 1040
BseXI GCAGC 2 cut(s) 386, 1049
Bsh1236I CGCG 1 cut(s) 759
BshFI GGCC 7 cut(s) 733, 830, 1053, 1065, 1111, 1194, 1249
BsiSI CCGG 2 cut(s) 165, 730
BslFI GGGAC 1 cut(s) 562
BslI CCNNNNNNNGG 1 cut(s) 586
BsmAI GTCTC 4 cut(s) 153, 301, 594, 712
BsmBI CGTCTC 3 cut(s) 153, 594, 712
BsmFI GGGAC 1 cut(s) 562
BsnI GGCC 7 cut(s) 733, 830, 1053, 1065, 1111, 1194, 1249
Bso31I GGTCTC 1 cut(s) 301
Bsp119I TTCGAA 2 cut(s) 856, 915
Bsp1286I GDGCHC 1 cut(s) 660
Bsp143I GATC 6 cut(s) 19, 193, 273, 607, 702, 1215
BspACI CCGC 1 cut(s) 168
BspANI GGCC 7 cut(s) 733, 830, 1053, 1065, 1111, 1194, 1249
BspCNI CTCAG 6 cut(s) 391, 478, 691, 722, 882, 1098
BspFNI CGCG 1 cut(s) 759
BspHI TCATGA 2 cut(s) 324, 636
BspLI GGNNCC 3 cut(s) 225, 578, 1195
BspMAI CTGCAG 2 cut(s) 1059, 1071
BspMI ACCTGC 1 cut(s) 250
BspOI GCTAGC 1 cut(s) 80
BspPI GGATC 1 cut(s) 602
BspQI GCTCTTC 1 cut(s) 1038
BspT104I TTCGAA 2 cut(s) 856, 915
BspTNI GGTCTC 1 cut(s) 301
BsrDI GCAATG 2 cut(s) 140, 452
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 2 cut(s) 224, 1184
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 418
BssMI GATC 6 cut(s) 19, 193, 273, 607, 702, 1215
BssNI GRCGYC 1 cut(s) 797
BssT1I CCWWGG 1 cut(s) 418
Bst2UI CCWGG 2 cut(s) 665, 1191
Bst4CI ACNGT 3 cut(s) 841, 947, 1172
Bst6I CTCTTC 1 cut(s) 1038
BstACI GRCGYC 1 cut(s) 797
BstAPI GCANNNNNTGC 2 cut(s) 454, 1054
BstBAI YACGTR 1 cut(s) 1206
BstBI TTCGAA 2 cut(s) 856, 915
BstC8I GCNNGC 5 cut(s) 78, 166, 1055, 1067, 1187
BstFNI CGCG 1 cut(s) 759
BstH2I RGCGCY 1 cut(s) 535
BstHHI GCGC 1 cut(s) 534
BstKTI GATC 6 cut(s) 22, 196, 276, 610, 705, 1218
BstMAI GTCTC 4 cut(s) 153, 301, 594, 712
BstMBI GATC 6 cut(s) 19, 193, 273, 607, 702, 1215
BstMWI GCNNNNNNNGC 4 cut(s) 454, 476, 1054, 1191
BstNI CCWGG 2 cut(s) 665, 1191
BstSCI CCNGG 2 cut(s) 663, 1189
BstSFI CTRYAG 2 cut(s) 1055, 1067
BstUI CGCG 1 cut(s) 759
BstV1I GCAGC 2 cut(s) 386, 1049
BstV2I GAAGAC 1 cut(s) 1241
BstX2I RGATCY 2 cut(s) 607, 1215
BstXI CCANNNNNNTGG 1 cut(s) 752
BstYI RGATCY 2 cut(s) 607, 1215
Bsu36I CCTNAGG 1 cut(s) 486
BsuI GTATCC 1 cut(s) 812
BsuRI GGCC 7 cut(s) 733, 830, 1053, 1065, 1111, 1194, 1249
BtsIMutI CAGTG 1 cut(s) 1177
BveI ACCTGC 1 cut(s) 250
Cac8I GCNNGC 5 cut(s) 78, 166, 1055, 1067, 1187
CciI TCATGA 2 cut(s) 324, 636
CfoI GCGC 1 cut(s) 534
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 3 cut(s) 239, 576, 1193
CseI GACGC 1 cut(s) 611
Csp6I GTAC 3 cut(s) 742, 1009, 1243
CviQI GTAC 3 cut(s) 742, 1009, 1243
DpnI GATC 6 cut(s) 21, 195, 275, 609, 704, 1217
DpnII GATC 6 cut(s) 19, 193, 273, 607, 702, 1215
EaeI YGGCCR 1 cut(s) 731
Eam1104I CTCTTC 1 cut(s) 1038
EarI CTCTTC 1 cut(s) 1038
Eco130I CCWWGG 1 cut(s) 418
Eco147I AGGCCT 4 cut(s) 830, 1053, 1065, 1111
Eco24I GRGCYC 1 cut(s) 660
Eco31I GGTCTC 1 cut(s) 301
Eco47I GGWCC 2 cut(s) 239, 576
Eco47III AGCGCT 1 cut(s) 533
Eco81I CCTNAGG 1 cut(s) 486
EcoO109I RGGNCCY 1 cut(s) 1193
EcoRII CCWGG 2 cut(s) 663, 1189
EcoT14I CCWWGG 1 cut(s) 418
EcoT38I GRGCYC 1 cut(s) 660
ErhI CCWWGG 1 cut(s) 418
Esp3I CGTCTC 3 cut(s) 153, 594, 712
FaqI GGGAC 1 cut(s) 562
FbaI TGATCA 1 cut(s) 273
FblI GTMKAC 1 cut(s) 540
Fnu4HI GCNGC 2 cut(s) 375, 1038
FriOI GRGCYC 1 cut(s) 660
Fsp4HI GCNGC 2 cut(s) 375, 1038
FspBI CTAG 4 cut(s) 77, 597, 612, 986
GlaI GCGC 1 cut(s) 533
GluI GCNGC 2 cut(s) 375, 1038
HaeII RGCGCY 1 cut(s) 535
HaeIII GGCC 7 cut(s) 733, 830, 1053, 1065, 1111, 1194, 1249
HapII CCGG 2 cut(s) 165, 730
HgaI GACGC 1 cut(s) 611
HhaI GCGC 1 cut(s) 534
Hin1I GRCGYC 1 cut(s) 797
Hin6I GCGC 1 cut(s) 532
HinP1I GCGC 1 cut(s) 532
HinfI GANTC 4 cut(s) 425, 439, 1015, 1159
HpaII CCGG 2 cut(s) 165, 730
HphI GGTGA 5 cut(s) 434, 550, 799, 892, 1134
Hpy166II GTNNAC 3 cut(s) 541, 617, 1177
Hpy188I TCNGA 2 cut(s) 273, 891
Hpy188III TCNNGA 6 cut(s) 233, 325, 485, 597, 637, 1254
Hpy8I GTNNAC 3 cut(s) 541, 617, 1177
Hpy99I CGWCG 1 cut(s) 802
HpyAV CCTTC 1 cut(s) 863
HpyCH4III ACNGT 3 cut(s) 841, 947, 1172
HpyCH4IV ACGT 3 cut(s) 797, 896, 1205
HpyCH4V TGCA 6 cut(s) 267, 294, 374, 448, 1057, 1069
HpyF10VI GCNNNNNNNGC 4 cut(s) 454, 476, 1054, 1191
HpySE526I ACGT 3 cut(s) 797, 896, 1205
Hsp92I GRCGYC 1 cut(s) 797
HspAI GCGC 1 cut(s) 532
KroI GCCGGC 1 cut(s) 164
KroNI GCCGGC 1 cut(s) 166
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 6 cut(s) 19, 193, 273, 607, 702, 1215
LguI GCTCTTC 1 cut(s) 1038
LmnI GCTCC 2 cut(s) 388, 1027
Lsp1109I GCAGC 2 cut(s) 386, 1049
LweI GCATC 3 cut(s) 189, 337, 361
MaeI CTAG 4 cut(s) 77, 597, 612, 986
MaeII ACGT 3 cut(s) 797, 896, 1205
MaeIII GTNAC 4 cut(s) 422, 770, 805, 880
MalI GATC 6 cut(s) 21, 195, 275, 609, 704, 1217
MboI GATC 6 cut(s) 19, 193, 273, 607, 702, 1215
MboII GAAGA 5 cut(s) 203, 718, 986, 1055, 1246
MflI RGATCY 2 cut(s) 607, 1215
MhlI GDGCHC 1 cut(s) 660
MluCI AATT 3 cut(s) 133, 553, 689
MlyI GAGTC 3 cut(s) 419, 1009, 1153
MroNI GCCGGC 1 cut(s) 164
MseI TTAA 3 cut(s) 27, 591, 864
MslI CAYNNNNRTG 1 cut(s) 750
MspI CCGG 2 cut(s) 165, 730
MspR9I CCNGG 2 cut(s) 665, 1191
MvaI CCWGG 2 cut(s) 665, 1191
MvnI CGCG 1 cut(s) 759
MwoI GCNNNNNNNGC 4 cut(s) 454, 476, 1054, 1191
NaeI GCCGGC 1 cut(s) 166
NdeII GATC 6 cut(s) 19, 193, 273, 607, 702, 1215
NgoMIV GCCGGC 1 cut(s) 164
NheI GCTAGC 1 cut(s) 76
NlaIV GGNNCC 3 cut(s) 225, 578, 1195
NmuCI GTSAC 4 cut(s) 422, 770, 805, 880
NspV TTCGAA 2 cut(s) 856, 915
PagI TCATGA 2 cut(s) 324, 636
PceI AGGCCT 4 cut(s) 830, 1053, 1065, 1111
PciSI GCTCTTC 1 cut(s) 1038
PcsI WCGNNNNNNNCGW 1 cut(s) 690
PdiI GCCGGC 1 cut(s) 166
PfeI GAWTC 1 cut(s) 439
PkrI GCNGC 2 cut(s) 376, 1039
PleI GAGTC 3 cut(s) 419, 1009, 1153
PpsI GAGTC 3 cut(s) 419, 1009, 1153
Ppu21I YACGTR 1 cut(s) 1206
PshBI ATTAAT 1 cut(s) 27
PsiI TTATAA 1 cut(s) 1261
Psp6I CCWGG 2 cut(s) 663, 1189
PspGI CCWGG 2 cut(s) 663, 1189
PspN4I GGNNCC 3 cut(s) 225, 578, 1195
PspPI GGNCC 3 cut(s) 239, 576, 1193
PstI CTGCAG 2 cut(s) 1059, 1071
PsuI RGATCY 2 cut(s) 607, 1215
RsaI GTAC 3 cut(s) 743, 1010, 1244
RsaNI GTAC 3 cut(s) 742, 1009, 1243
RseI CAYNNNNRTG 1 cut(s) 750
SapI GCTCTTC 1 cut(s) 1038
SaqAI TTAA 3 cut(s) 27, 591, 864
SatI GCNGC 2 cut(s) 375, 1038
Sau3AI GATC 6 cut(s) 19, 193, 273, 607, 702, 1215
Sau96I GGNCC 3 cut(s) 239, 576, 1193
SchI GAGTC 3 cut(s) 419, 1009, 1153
ScrFI CCNGG 2 cut(s) 665, 1191
SduI GDGCHC 1 cut(s) 660
SfaNI GCATC 3 cut(s) 189, 337, 361
SfcI CTRYAG 2 cut(s) 1055, 1067
SfuI TTCGAA 2 cut(s) 856, 915
SinI GGWCC 2 cut(s) 239, 576
SmiMI CAYNNNNRTG 1 cut(s) 750
SmlI CTYRAG 1 cut(s) 1017
SmoI CTYRAG 1 cut(s) 1017
Sse9I AATT 3 cut(s) 133, 553, 689
SseBI AGGCCT 4 cut(s) 830, 1053, 1065, 1111
SsiI CCGC 1 cut(s) 168
SspI AATATT 3 cut(s) 67, 207, 506
SspMI CTAG 4 cut(s) 77, 597, 612, 986
StuI AGGCCT 4 cut(s) 830, 1053, 1065, 1111
StyD4I CCNGG 2 cut(s) 663, 1189
StyI CCWWGG 1 cut(s) 418
TaaI ACNGT 3 cut(s) 841, 947, 1172
TaiI ACGT 3 cut(s) 800, 899, 1208
TaqI TCGA 6 cut(s) 183, 684, 693, 856, 915, 1255
TasI AATT 3 cut(s) 133, 553, 689
TatI WGTACW 1 cut(s) 1008
TfiI GAWTC 1 cut(s) 439
Tru1I TTAA 3 cut(s) 27, 591, 864
Tru9I TTAA 3 cut(s) 27, 591, 864
TscAI CASTG 1 cut(s) 1184
TseFI GTSAC 4 cut(s) 422, 770, 805, 880
TseI GCWGC 2 cut(s) 374, 1037
Tsp45I GTSAC 4 cut(s) 422, 770, 805, 880
TspDTI ATGAA 7 cut(s) 17, 273, 311, 313, 341, 653, 762
TspGWI ACGGA 2 cut(s) 332, 831
TspRI CASTG 1 cut(s) 1184
VpaK11BI GGWCC 2 cut(s) 239, 576
VspI ATTAAT 1 cut(s) 27
XapI RAATTY 1 cut(s) 133
XbaI TCTAGA 1 cut(s) 596
XcmI CCANNNNNNNNNTGG 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 540
XspI CTAG 4 cut(s) 77, 597, 612, 986
ZraI GACGTC 1 cut(s) 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.