Rh2AG572400

Protein trichome birefringence-like 19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0013701
Physical Location & Seq
Reverse (-)
80260039 .. 80261606
1568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG572400.1

Sequence Viewer

Length: 963 bp
ATGAAGTTTGGGAGACCGGATTCAGAGTTTATGAAGTGGAGGTGGAAGCCAGATGGTTGTGAGTTACCTTTGTTTGATGCAGCTGAGTTTTTGGAGATCTTTAGAGGGAAGTCCTTGGCTTTTCTTGGGGACTCTGTGGGAAGGAATCAAATGCAGTCATTGTTGTGCCTCTTAGCCAATGTGACTTATCCTGAGGACCTTTCTGACCAGTACTCAAATGACACAGATTACTTCAAGCACTATGTCTACACTGATTACAATTTTACTATGGCAACTCTATGGGCTCCTTACTTGGTTAGATCTAGTGATGCAGACCCTAGTGGACATTCCCGGAACAGCCTCATGAACCTCTACTTGGATGAGCCAGACGAGGCATGGACAAGTCAGGTTGAAAATTTCGACTATGTGATCGTCTCAGCAGGGCAATGGTTCTTCCGGCCGCTAGTGTATTATGAAAATGGTGGAAGTATTGGGTGTCACTGGTGCAACCTGGACAACATGACAGAGATTCCAGAGACCTATGGGTACAGAAAGGCCTTCAGGACTGTGTTTAGGACGCTCCAGAGCCTCGAAAACTATAAGGGTGTGACATTTTTGAGGACTTTCTCTCCGGCACACTTTGAAAATGGGGCTTGGAACGCTGGAGGGAGTTGTGGGAGGACGAAGCCTTTTAGCAAAGAGGAAATGAAGTTAGAAGGATTTATTTTGGACATGTATATGACTCAAGTAGAAGAGCTCAAAGCAGCACAAAACCAAGCTAAGCAGAAAGGTCTGGACTTTAGATTGATGGAAACAACTGAAGCAATGCTGCTGAGACCTGATGGACACCCAAATTTCTATGGAGCCTCACCGCATAGGAATACGACTTATGCCGACTGTGTTCACTGGTGCTTGCCTGGCCCTATTGATACATGGAATGAGATTTTGCTGCATATGTTGAAGACAGGGCAGAGATCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

320

Amino Acids

36.97

Weight (kDa)

5.23

Isoelectric Point (pI)

38.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 1 - 21 4e-06 PMR5 N terminal Domain
PC-Esterase PF13839 22 - 312 7.2e-93 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013701)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g45620
malus_domestica MD17G1072300.v1.1
prunus_persica Prupe.3G242400_v2.0.a1 Prupe.3G242900_v2.0.a1 Prupe.8G194900_v2.0.a1
pyrus_communis pycom09g00780 pycom17g07180 pycom17g07330
rosa_chinensis RchiOBHm_Chr2g0163771
rosa_laevigata RLG00000021414
rosa_multiflora Rmu_sc0004918.1_g000002
rosa_roxburghii Rroxscaffold_2G00087060
rosa_rugosa Rorug02G0504500
rosa_samantha Rh2AG572400 Rh2BG583000 Rh2CG553900 Rh2DG592700
rosa_wichuraiana Rw2G047310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 246
AciI CCGC 2 cut(s) 440, 851
AcoI YGGCCR 1 cut(s) 437
AcsI RAATTY 2 cut(s) 394, 832
AcuI CTGAAG 2 cut(s) 523, 819
AfaI GTAC 2 cut(s) 212, 527
AfiI CCNNNNNNNGG 1 cut(s) 355
AflIII ACRYGT 1 cut(s) 711
AgsI TTSAA 4 cut(s) 235, 392, 623, 940
AjnI CCWGG 2 cut(s) 489, 895
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AluBI AGCT 3 cut(s) 83, 736, 758
AluI AGCT 3 cut(s) 83, 736, 758
Alw21I GWGCWC 1 cut(s) 738
Alw26I GTCTC 4 cut(s) 7, 418, 509, 808
AoxI GGCC 3 cut(s) 437, 534, 898
ApeKI GCWGC 4 cut(s) 80, 743, 808, 928
ApoI RAATTY 2 cut(s) 394, 832
AspS9I GGNCC 2 cut(s) 196, 899
AsuC2I CCSGG 1 cut(s) 331
AsuHPI GGTGA 1 cut(s) 840
AvaII GGWCC 1 cut(s) 196
AxyI CCTNAGG 1 cut(s) 192
BanII GRGCYC 2 cut(s) 286, 738
BbsI GAAGAC 1 cut(s) 947
Bbv12I GWGCWC 1 cut(s) 738
BbvI GCAGC 4 cut(s) 92, 755, 795, 915
BccI CCATC 3 cut(s) 47, 781, 815
BciT130I CCWGG 2 cut(s) 491, 897
BcnI CCSGG 1 cut(s) 331
BcoDI GTCTC 4 cut(s) 7, 418, 509, 808
BfaI CTAG 3 cut(s) 303, 318, 443
BglII AGATCT 2 cut(s) 96, 299
BisI GCNGC 5 cut(s) 81, 440, 744, 809, 929
BlpI GCTNAGC 1 cut(s) 759
BlsI GCNGC 5 cut(s) 82, 441, 745, 810, 930
BmcAI AGTACT 1 cut(s) 212
Bme1390I CCNGG 3 cut(s) 331, 491, 897
Bme18I GGWCC 1 cut(s) 196
BmgT120I GGNCC 2 cut(s) 196, 899
BmiI GGNNCC 2 cut(s) 285, 844
BmrFI CCNGG 3 cut(s) 331, 491, 897
BmsI GCATC 2 cut(s) 67, 298
BpiI GAAGAC 1 cut(s) 947
BpmI CTGGAG 2 cut(s) 545, 663
Bpu1102I GCTNAGC 1 cut(s) 759
BpuEI CTTGAG 1 cut(s) 708
BpuMI CCSGG 1 cut(s) 331
BsaI GGTCTC 3 cut(s) 7, 509, 808
BsaJI CCNNGG 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 16
BsaXI ACNNNNNCTCC 2 cut(s) 592, 622
Bsc4I CCNNNNNNNGG 1 cut(s) 355
Bse1I ACTGG 3 cut(s) 208, 485, 890
Bse21I CCTNAGG 1 cut(s) 192
Bse3DI GCAATG 2 cut(s) 431, 810
BseBI CCWGG 2 cut(s) 491, 897
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 364
BseLI CCNNNNNNNGG 1 cut(s) 355
BseMI GCAATG 2 cut(s) 431, 810
BseMII CTCAG 4 cut(s) 75, 183, 429, 803
BseNI ACTGG 3 cut(s) 208, 485, 890
BseX3I CGGCCG 1 cut(s) 437
BseXI GCAGC 4 cut(s) 92, 755, 795, 915
Bsh1285I CGRYCG 1 cut(s) 440
BshFI GGCC 3 cut(s) 439, 536, 900
BsiEI CGRYCG 1 cut(s) 440
BsiHKAI GWGCWC 1 cut(s) 738
BsiSI CCGG 4 cut(s) 17, 331, 436, 611
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 355
BsmAI GTCTC 4 cut(s) 7, 418, 509, 808
BsmBI CGTCTC 1 cut(s) 418
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 3 cut(s) 439, 536, 900
Bso31I GGTCTC 3 cut(s) 7, 509, 808
Bsp1286I GDGCHC 2 cut(s) 286, 738
Bsp143I GATC 4 cut(s) 96, 299, 408, 953
Bsp1720I GCTNAGC 1 cut(s) 759
BspACI CCGC 2 cut(s) 440, 851
BspANI GGCC 3 cut(s) 439, 536, 900
BspCNI CTCAG 4 cut(s) 76, 184, 428, 804
BspHI TCATGA 1 cut(s) 342
BspLI GGNNCC 2 cut(s) 285, 844
BspQI GCTCTTC 1 cut(s) 726
BspTNI GGTCTC 3 cut(s) 7, 509, 808
BsrDI GCAATG 2 cut(s) 431, 810
BsrI ACTGG 3 cut(s) 208, 485, 890
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 4 cut(s) 96, 299, 408, 953
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 2 cut(s) 491, 897
Bst4CI ACNGT 2 cut(s) 547, 878
Bst6I CTCTTC 1 cut(s) 726
BstC8I GCNNGC 1 cut(s) 893
BstDEI CTNAG 6 cut(s) 84, 172, 192, 415, 759, 812
BstF5I GGATG 1 cut(s) 364
BstKTI GATC 4 cut(s) 99, 302, 411, 956
BstMAI GTCTC 4 cut(s) 7, 418, 509, 808
BstMBI GATC 4 cut(s) 96, 299, 408, 953
BstMCI CGRYCG 1 cut(s) 440
BstMWI GCNNNNNNNGC 2 cut(s) 638, 897
BstNI CCWGG 2 cut(s) 491, 897
BstNSI RCATGY 1 cut(s) 715
BstSCI CCNGG 3 cut(s) 329, 489, 895
BstV1I GCAGC 4 cut(s) 92, 755, 795, 915
BstV2I GAAGAC 1 cut(s) 947
BstX2I RGATCY 2 cut(s) 96, 299
BstYI RGATCY 2 cut(s) 96, 299
BstZI CGGCCG 1 cut(s) 437
Bsu36I CCTNAGG 1 cut(s) 192
BsuRI GGCC 3 cut(s) 439, 536, 900
BtsCI GGATG 1 cut(s) 364
BtsIMutI CAGTG 3 cut(s) 249, 478, 883
Cac8I GCNNGC 1 cut(s) 893
CciI TCATGA 1 cut(s) 342
Cfr13I GGNCC 2 cut(s) 196, 899
CseI GACGC 1 cut(s) 565
Csp6I GTAC 2 cut(s) 211, 526
CviAII CATG 5 cut(s) 343, 375, 499, 712, 912
CviQI GTAC 2 cut(s) 211, 526
DdeI CTNAG 6 cut(s) 84, 172, 192, 415, 759, 812
DpnI GATC 4 cut(s) 98, 301, 410, 955
DpnII GATC 4 cut(s) 96, 299, 408, 953
EaeI YGGCCR 1 cut(s) 437
EagI CGGCCG 1 cut(s) 437
Eam1104I CTCTTC 1 cut(s) 726
EarI CTCTTC 1 cut(s) 726
Ecl136II GAGCTC 1 cut(s) 736
EclXI CGGCCG 1 cut(s) 437
Eco130I CCWWGG 1 cut(s) 114
Eco147I AGGCCT 1 cut(s) 536
Eco24I GRGCYC 2 cut(s) 286, 738
Eco31I GGTCTC 3 cut(s) 7, 509, 808
Eco47I GGWCC 1 cut(s) 196
Eco52I CGGCCG 1 cut(s) 437
Eco53kI GAGCTC 1 cut(s) 736
Eco57I CTGAAG 2 cut(s) 523, 819
Eco81I CCTNAGG 1 cut(s) 192
EcoICRI GAGCTC 1 cut(s) 736
EcoO109I RGGNCCY 1 cut(s) 196
EcoRII CCWGG 2 cut(s) 489, 895
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 2 cut(s) 286, 738
ErhI CCWWGG 1 cut(s) 114
Esp3I CGTCTC 1 cut(s) 418
FaeI CATG 5 cut(s) 346, 378, 502, 715, 915
FaqI GGGAC 1 cut(s) 143
FatI CATG 5 cut(s) 342, 374, 498, 711, 911
FauNDI CATATG 1 cut(s) 933
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 5 cut(s) 81, 440, 744, 809, 929
FokI GGATG 1 cut(s) 371
FriOI GRGCYC 2 cut(s) 286, 738
Fsp4HI GCNGC 5 cut(s) 81, 440, 744, 809, 929
FspBI CTAG 3 cut(s) 303, 318, 443
GluI GCNGC 5 cut(s) 81, 440, 744, 809, 929
GsuI CTGGAG 2 cut(s) 545, 663
HaeIII GGCC 3 cut(s) 439, 536, 900
HapII CCGG 4 cut(s) 17, 331, 436, 611
HgaI GACGC 1 cut(s) 565
Hin1II CATG 5 cut(s) 346, 378, 502, 715, 915
HinfI GANTC 5 cut(s) 20, 131, 145, 508, 721
HpaII CCGG 4 cut(s) 17, 331, 436, 611
HphI GGTGA 1 cut(s) 840
Hpy166II GTNNAC 3 cut(s) 247, 323, 883
Hpy188I TCNGA 2 cut(s) 25, 205
Hpy188III TCNNGA 6 cut(s) 191, 343, 512, 541, 562, 773
Hpy8I GTNNAC 3 cut(s) 247, 323, 883
HpyAV CCTTC 3 cut(s) 135, 547, 689
HpyCH4III ACNGT 2 cut(s) 547, 878
HpyCH4V TGCA 5 cut(s) 80, 154, 311, 486, 931
HpyF10VI GCNNNNNNNGC 2 cut(s) 638, 897
HpyF3I CTNAG 6 cut(s) 84, 172, 192, 415, 759, 812
Hsp92II CATG 5 cut(s) 346, 378, 502, 715, 915
Kzo9I GATC 4 cut(s) 96, 299, 408, 953
LguI GCTCTTC 1 cut(s) 726
LmnI GCTCC 3 cut(s) 289, 564, 842
Lsp1109I GCAGC 4 cut(s) 92, 755, 795, 915
LweI GCATC 2 cut(s) 67, 298
MaeI CTAG 3 cut(s) 303, 318, 443
MaeIII GTNAC 4 cut(s) 63, 181, 476, 586
MalI GATC 4 cut(s) 98, 301, 410, 955
MboI GATC 4 cut(s) 96, 299, 408, 953
MboII GAAGA 3 cut(s) 424, 743, 952
MflI RGATCY 2 cut(s) 96, 299
MhlI GDGCHC 2 cut(s) 286, 738
MluCI AATT 3 cut(s) 259, 394, 832
MlyI GAGTC 2 cut(s) 125, 715
MslI CAYNNNNRTG 2 cut(s) 163, 716
MspA1I CMGCKG 1 cut(s) 83
MspI CCGG 4 cut(s) 17, 331, 436, 611
MspR9I CCNGG 3 cut(s) 331, 491, 897
MvaI CCWGG 2 cut(s) 491, 897
MwoI GCNNNNNNNGC 2 cut(s) 638, 897
NciI CCSGG 1 cut(s) 331
NdeI CATATG 1 cut(s) 933
NdeII GATC 4 cut(s) 96, 299, 408, 953
NlaIII CATG 5 cut(s) 346, 378, 502, 715, 915
NlaIV GGNNCC 2 cut(s) 285, 844
NmuCI GTSAC 3 cut(s) 181, 476, 586
NspI RCATGY 1 cut(s) 715
PagI TCATGA 1 cut(s) 342
PceI AGGCCT 1 cut(s) 536
PciI ACATGT 1 cut(s) 711
PciSI GCTCTTC 1 cut(s) 726
PfeI GAWTC 3 cut(s) 20, 145, 508
PfoI TCCNGGA 1 cut(s) 329
PkrI GCNGC 5 cut(s) 82, 441, 745, 810, 930
PleI GAGTC 2 cut(s) 125, 715
PpsI GAGTC 2 cut(s) 125, 715
PpuMI RGGWCCY 1 cut(s) 196
PscI ACATGT 1 cut(s) 711
Psp124BI GAGCTC 1 cut(s) 738
Psp5II RGGWCCY 1 cut(s) 196
Psp6I CCWGG 2 cut(s) 489, 895
PspGI CCWGG 2 cut(s) 489, 895
PspN4I GGNNCC 2 cut(s) 285, 844
PspPI GGNCC 2 cut(s) 196, 899
PspPPI RGGWCCY 1 cut(s) 196
PsuI RGATCY 2 cut(s) 96, 299
PvuII CAGCTG 1 cut(s) 83
RsaI GTAC 2 cut(s) 212, 527
RsaNI GTAC 2 cut(s) 211, 526
RseI CAYNNNNRTG 2 cut(s) 163, 716
SacI GAGCTC 1 cut(s) 738
SapI GCTCTTC 1 cut(s) 726
SatI GCNGC 5 cut(s) 81, 440, 744, 809, 929
Sau3AI GATC 4 cut(s) 96, 299, 408, 953
Sau96I GGNCC 2 cut(s) 196, 899
ScaI AGTACT 1 cut(s) 212
SchI GAGTC 2 cut(s) 125, 715
ScrFI CCNGG 3 cut(s) 331, 491, 897
SduI GDGCHC 2 cut(s) 286, 738
SfaNI GCATC 2 cut(s) 67, 298
SinI GGWCC 1 cut(s) 196
SmiMI CAYNNNNRTG 2 cut(s) 163, 716
SmlI CTYRAG 1 cut(s) 723
SmoI CTYRAG 1 cut(s) 723
Sse9I AATT 3 cut(s) 259, 394, 832
SseBI AGGCCT 1 cut(s) 536
SsiI CCGC 2 cut(s) 440, 851
SspMI CTAG 3 cut(s) 303, 318, 443
SstI GAGCTC 1 cut(s) 738
StuI AGGCCT 1 cut(s) 536
StyD4I CCNGG 3 cut(s) 329, 489, 895
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 2 cut(s) 547, 878
TaqI TCGA 2 cut(s) 399, 570
TasI AATT 3 cut(s) 259, 394, 832
TatI WGTACW 1 cut(s) 210
TauI GCSGC 1 cut(s) 442
TfiI GAWTC 3 cut(s) 20, 145, 508
TscAI CASTG 3 cut(s) 256, 485, 890
TseFI GTSAC 3 cut(s) 181, 476, 586
TseI GCWGC 4 cut(s) 80, 743, 808, 928
Tsp45I GTSAC 3 cut(s) 181, 476, 586
TspDTI ATGAA 5 cut(s) 17, 47, 359, 468, 701
TspRI CASTG 3 cut(s) 256, 485, 890
VpaK11BI GGWCC 1 cut(s) 196
XapI RAATTY 2 cut(s) 394, 832
XceI RCATGY 1 cut(s) 715
XcmI CCANNNNNNNNNTGG 1 cut(s) 372
XmiI GTMKAC 1 cut(s) 246
XspI CTAG 3 cut(s) 303, 318, 443
ZrmI AGTACT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.