Rorug02G0504500

Protein trichome birefringence-like 19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0013701
Physical Location & Seq
Forward (+)
63604795 .. 63605037
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0504500.1

Sequence Viewer

Length: 243 bp
ATGAAGATCTATTTCGATATGGTTGCTTTTGTTTTCTGCAGGGTTCGACTTCAAAGCAGGAGAAATGACGTGATTGTAGTCACAAAGGAGAATTTCGACATCTGCAACACCACAAAACCATTATATCAATACAAGGGTCCAGTATTTCTTAGAGCTGCCATTTCCGGCACATATTATCTCACTTGCAGCTTCGCCGGGCACTGCGCCAAGGGGCAAAAGGTAGCCATCTATTTTGCACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

80

Amino Acids

9.2

Weight (kDa)

9.51

Isoelectric Point (pI)

27.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 18 - 72 2.5e-07 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013701)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g45620
malus_domestica MD17G1072300.v1.1
prunus_persica Prupe.3G242400_v2.0.a1 Prupe.3G242900_v2.0.a1 Prupe.8G194900_v2.0.a1
pyrus_communis pycom09g00780 pycom17g07180 pycom17g07330
rosa_chinensis RchiOBHm_Chr2g0163771
rosa_laevigata RLG00000021414
rosa_multiflora Rmu_sc0004918.1_g000002
rosa_roxburghii Rroxscaffold_2G00087060
rosa_rugosa Rorug02G0504500
rosa_samantha Rh2AG572400 Rh2BG583000 Rh2CG553900 Rh2DG592700
rosa_wichuraiana Rw2G047310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 91
AgsI TTSAA 1 cut(s) 53
AjiI CACGTC 1 cut(s) 70
AluBI AGCT 2 cut(s) 155, 189
AluI AGCT 2 cut(s) 155, 189
ApeKI GCWGC 2 cut(s) 155, 186
ApoI RAATTY 1 cut(s) 91
AspLEI GCGC 1 cut(s) 206
AspS9I GGNCC 1 cut(s) 137
AsuC2I CCSGG 1 cut(s) 196
AvaII GGWCC 1 cut(s) 137
BaeGI GKGCMC 1 cut(s) 201
BbvI GCAGC 2 cut(s) 142, 198
BccI CCATC 1 cut(s) 233
BcgI CGANNNNNNTGC 2 cut(s) 5, 39
BcnI CCSGG 1 cut(s) 196
BfaI CTAG 1 cut(s) 241
BfmI CTRYAG 1 cut(s) 37
BglII AGATCT 1 cut(s) 6
BisI GCNGC 2 cut(s) 156, 187
BlsI GCNGC 2 cut(s) 157, 188
Bme1390I CCNGG 1 cut(s) 196
Bme18I GGWCC 1 cut(s) 137
BmgBI CACGTC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 138
BmrFI CCNGG 1 cut(s) 196
BpuMI CCSGG 1 cut(s) 196
BsaJI CCNNGG 1 cut(s) 207
Bse1I ACTGG 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 201
BseXI GCAGC 2 cut(s) 142, 198
BsiSI CCGG 2 cut(s) 165, 195
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 138
BspMAI CTGCAG 1 cut(s) 41
BsrI ACTGG 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 149
BstHHI GCGC 1 cut(s) 206
BstKTI GATC 1 cut(s) 9
BstMBI GATC 1 cut(s) 6
BstSCI CCNGG 1 cut(s) 194
BstSFI CTRYAG 1 cut(s) 37
BstSLI GKGCMC 1 cut(s) 201
BstV1I GCAGC 2 cut(s) 142, 198
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BtrI CACGTC 1 cut(s) 70
BtsI GCAGTG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 199
CfoI GCGC 1 cut(s) 206
Cfr13I GGNCC 1 cut(s) 137
CviJI RGCY 3 cut(s) 155, 189, 224
CviKI_1 RGCY 3 cut(s) 155, 189, 224
DdeI CTNAG 1 cut(s) 149
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 137
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaiI YATR 3 cut(s) 20, 124, 172
Fnu4HI GCNGC 2 cut(s) 156, 187
Fsp4HI GCNGC 2 cut(s) 156, 187
FspBI CTAG 1 cut(s) 241
GlaI GCGC 1 cut(s) 205
GluI GCNGC 2 cut(s) 156, 187
HapII CCGG 2 cut(s) 165, 195
HhaI GCGC 1 cut(s) 206
Hin6I GCGC 1 cut(s) 204
HinP1I GCGC 1 cut(s) 204
HpaII CCGG 2 cut(s) 165, 195
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 4 cut(s) 39, 105, 186, 236
HpyF3I CTNAG 1 cut(s) 149
HpySE526I ACGT 1 cut(s) 69
HspAI GCGC 1 cut(s) 204
Kzo9I GATC 1 cut(s) 6
LpnPI CCDG 5 cut(s) 25, 43, 153, 178, 208
Lsp1109I GCAGC 2 cut(s) 142, 198
MaeI CTAG 1 cut(s) 241
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 79
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 1 cut(s) 16
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 1 cut(s) 91
MspI CCGG 2 cut(s) 165, 195
MspR9I CCNGG 1 cut(s) 196
NciI CCSGG 1 cut(s) 196
NdeII GATC 1 cut(s) 6
NlaIV GGNNCC 1 cut(s) 138
NmuCI GTSAC 1 cut(s) 79
PkrI GCNGC 2 cut(s) 157, 188
PspN4I GGNNCC 1 cut(s) 138
PspPI GGNCC 1 cut(s) 137
PstI CTGCAG 1 cut(s) 41
PsuI RGATCY 1 cut(s) 6
SatI GCNGC 2 cut(s) 156, 187
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 196
SduI GDGCHC 1 cut(s) 201
SetI ASST 4 cut(s) 72, 157, 191, 222
SfcI CTRYAG 1 cut(s) 37
SinI GGWCC 1 cut(s) 137
Sse9I AATT 1 cut(s) 91
SspMI CTAG 1 cut(s) 241
StyD4I CCNGG 1 cut(s) 194
StyI CCWWGG 1 cut(s) 207
TaiI ACGT 1 cut(s) 72
TaqI TCGA 3 cut(s) 15, 46, 96
TasI AATT 1 cut(s) 91
TscAI CASTG 1 cut(s) 206
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 2 cut(s) 155, 186
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 206
VpaK11BI GGWCC 1 cut(s) 137
XapI RAATTY 1 cut(s) 91
XspI CTAG 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.