pycom09g00780

Protein trichome birefringence-like 19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0013701
Physical Location & Seq
Forward (+)
595819 .. 597388
1570 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g00780.2

Sequence Viewer

Length: 1371 bp
ATGAAAAATGATGCCCCACCAAAAGAAAAGTTGCATCATAATTTGGTTGGTAACACGTACCATAACAAATTATTTAATCCAATAATCTATAATCTTGCCTCACAATTCTCCACCATGAAGTTTCAAGCTATTGATCTGCCTAATGCAAAATACACACAACCAAACAACACCTACAAAAATGGTATTCTTCTAGCCCTCACCTTTCTTCTGCTCACCACAATGCCTCTCTGCATAAACAACAGCACTTCTCCATTGCTATCTCCTAACAGCAACATTACCAGTGGATTAAAAACCATCGAAAACGAAGACCAATGCCAAATATTTACTGGGAATTGGATACCATATCCAGATGGACCTGCTTACTACACAAATGAAACTTGCAATTTGATCATCGATCAGCAGAACTGCATGAAATTCGGGAGGCCCGACACGGAGTTCATGAAATGGAGGTGGAAGCCCGAAAATTGCGAGTTGCCATTGTTCGATGCAGCTCAGTTCTTGGAGCTTGTTAGAGGGAAGTCATTGGCATTTCTTGGTGATTCTGTGGGAATGAATCAAATGCGGTCATTGCTCTGCCTTTTGTCCAGTGTGACTTATCCTGAAGACGTTTCTCACAAGTATTCAACAAACACGAATTATTTCAAGCGTTATGTGTACCACGACTACAACTTCACTATGGCAAATCTCTGGGCACCCTACTTGGTTAAATCTCGAGACGTGGACCCGAATGGCCACAACATCAACAGCATCAGGACCCTATACTTAGACGAGCCCGACGAGGCTTGGGAAACTGAGGTTGAAAATTTTGATTATGTCATCGTCTCAGCAGGCCAATGGTTCTTCCTGCCGCTGATATACTACGAAAATGGTAGCGTTATAGGGTGTCACAAATGCGGACGAGACAACATGAAATCTTTTCTCACGCACTACGGCTACAAAAAGGCATTCCAAACGGTGTTCAGGACCCTTCAGAACCTCAAAAACTACAAGGGGGTGACATTTTTGAGGACGTTTTCGCCGGCACACTTCGAAAACGGGGCGTGGAACGAGGGAGGAAATTGTGCGAGGACAAGGCCTTTTAGCAAAGAAGAAATGAAGCTCGCTGGGCGTATTTTGGAGATGTATTTGGCACAAGTAGAGGAGCTACAAGCAGCAGAAAAGAAAGGTATGAAAAGAGGCCTTGAATTTAGGTTAATGGATACAACTGAAGCTATGTTGCTGAGGCCTGATGGACATCCTAACTTCTATGGACACTCACCTCACCGGAACATGACTGTTGCTGACTGTGTTCACTGGTGTTTGCCTGGACCCATTGATACGTGGAATGAGATTTTGCTGTATATGTTGAAATCCGGGCACAGAACATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

457

Amino Acids

52.6

Weight (kDa)

6.91

Isoelectric Point (pI)

36.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013701)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g45620
malus_domestica MD17G1072300.v1.1
prunus_persica Prupe.3G242400_v2.0.a1 Prupe.3G242900_v2.0.a1 Prupe.8G194900_v2.0.a1
pyrus_communis pycom09g00780 pycom17g07180 pycom17g07330
rosa_chinensis RchiOBHm_Chr2g0163771
rosa_laevigata RLG00000021414
rosa_multiflora Rmu_sc0004918.1_g000002
rosa_roxburghii Rroxscaffold_2G00087060
rosa_rugosa Rorug02G0504500
rosa_samantha Rh2AG572400 Rh2BG583000 Rh2CG553900 Rh2DG592700
rosa_wichuraiana Rw2G047310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 364
AccB1I GGYRCC 1 cut(s) 691
AciI CCGC 3 cut(s) 562, 848, 894
AcoI YGGCCR 1 cut(s) 730
AcsI RAATTY 3 cut(s) 413, 802, 1184
AcuI CTGAAG 3 cut(s) 621, 953, 1227
AfaI GTAC 2 cut(s) 59, 656
AflIII ACRYGT 1 cut(s) 54
AgsI TTSAA 6 cut(s) 125, 624, 643, 800, 1184, 1348
AjiI CACGTC 1 cut(s) 718
AjnI CCWGG 1 cut(s) 1303
AluBI AGCT 6 cut(s) 128, 491, 505, 1099, 1144, 1211
AluI AGCT 6 cut(s) 128, 491, 505, 1099, 1144, 1211
Alw26I GTCTC 3 cut(s) 708, 826, 894
Ama87I CYCGRG 1 cut(s) 711
AoxI GGCC 6 cut(s) 422, 730, 829, 1073, 1177, 1223
ApeKI GCWGC 2 cut(s) 488, 1151
ApoI RAATTY 3 cut(s) 413, 802, 1184
Asp700I GAANNNNTTC 1 cut(s) 638
AspS9I GGNCC 6 cut(s) 353, 423, 721, 753, 963, 1307
AsuC2I CCSGG 1 cut(s) 1354
AsuHPI GGTGA 6 cut(s) 190, 205, 548, 1006, 1248, 1253
AsuII TTCGAA 1 cut(s) 1029
AvaI CYCGRG 1 cut(s) 711
AvaII GGWCC 5 cut(s) 353, 721, 753, 963, 1307
BaeGI GKGCMC 2 cut(s) 694, 1359
BalI TGGCCA 1 cut(s) 732
BanI GGYRCC 1 cut(s) 691
BanII GRGCYC 1 cut(s) 774
BbsI GAAGAC 2 cut(s) 312, 609
BbvCI CCTCAGC 1 cut(s) 1220
BbvI GCAGC 2 cut(s) 500, 1163
BccI CCATC 3 cut(s) 302, 344, 1223
BceAI ACGGC 1 cut(s) 946
BcgI CGANNNNNNTGC 2 cut(s) 397, 431
BciT130I CCWGG 1 cut(s) 1305
BciVI GTATCC 2 cut(s) 330, 1192
BclI TGATCA 1 cut(s) 387
BcnI CCSGG 1 cut(s) 1354
BcoDI GTCTC 3 cut(s) 708, 826, 894
BfaI CTAG 1 cut(s) 191
BfuAI ACCTGC 1 cut(s) 364
BfuI GTATCC 2 cut(s) 330, 1192
BisI GCNGC 3 cut(s) 489, 848, 1152
BlsI GCNGC 3 cut(s) 490, 849, 1153
Bme1390I CCNGG 2 cut(s) 1305, 1354
Bme18I GGWCC 5 cut(s) 353, 721, 753, 963, 1307
BmeT110I CYCGRG 1 cut(s) 711
BmgBI CACGTC 1 cut(s) 718
BmgT120I GGNCC 6 cut(s) 353, 423, 721, 753, 963, 1307
BmiI GGNNCC 5 cut(s) 693, 723, 755, 965, 1309
BmrFI CCNGG 2 cut(s) 1305, 1354
BmrI ACTGGG 1 cut(s) 336
BmsI GCATC 3 cut(s) 43, 475, 756
BmuI ACTGGG 1 cut(s) 336
BpiI GAAGAC 2 cut(s) 312, 609
Bpu10I CCTNAGC 1 cut(s) 1220
Bpu14I TTCGAA 1 cut(s) 1029
BpuMI CCSGG 1 cut(s) 1354
Bsa29I ATCGAT 1 cut(s) 393
BsaAI YACGTR 2 cut(s) 57, 1320
BsaBI GATNNNNATC 1 cut(s) 1233
BsaWI WCCGGW 1 cut(s) 1263
Bse118I RCCGGY 1 cut(s) 1018
Bse1I ACTGG 4 cut(s) 279, 331, 585, 1298
Bse3DI GCAATG 2 cut(s) 251, 566
Bse8I GATNNNNATC 1 cut(s) 1233
BseBI CCWGG 1 cut(s) 1305
BseCI ATCGAT 1 cut(s) 393
BseGI GGATG 2 cut(s) 1234, 1364
BseJI GATNNNNATC 1 cut(s) 1233
BseMI GCAATG 2 cut(s) 251, 566
BseMII CTCAG 4 cut(s) 506, 783, 837, 1211
BseNI ACTGG 4 cut(s) 279, 331, 585, 1298
BseRI GAGGAG 1 cut(s) 1154
BseSI GKGCMC 2 cut(s) 694, 1359
BseXI GCAGC 2 cut(s) 500, 1163
BseYI CCCAGC 1 cut(s) 1103
BshFI GGCC 6 cut(s) 424, 732, 831, 1075, 1179, 1225
BshNI GGYRCC 1 cut(s) 691
BshVI ATCGAT 1 cut(s) 393
BsiHKCI CYCGRG 1 cut(s) 711
BsiSI CCGG 3 cut(s) 1019, 1264, 1353
BsmAI GTCTC 3 cut(s) 708, 826, 894
BsmBI CGTCTC 2 cut(s) 708, 826
BsmI GAATGC 1 cut(s) 944
BsnI GGCC 6 cut(s) 424, 732, 831, 1075, 1179, 1225
BsoBI CYCGRG 1 cut(s) 711
Bsp119I TTCGAA 1 cut(s) 1029
Bsp1286I GDGCHC 3 cut(s) 694, 774, 1359
Bsp143I GATC 3 cut(s) 133, 387, 394
BspACI CCGC 3 cut(s) 562, 848, 894
BspANI GGCC 6 cut(s) 424, 732, 831, 1075, 1179, 1225
BspCNI CTCAG 4 cut(s) 505, 784, 836, 1212
BspDI ATCGAT 1 cut(s) 393
BspHI TCATGA 1 cut(s) 438
BspLI GGNNCC 5 cut(s) 693, 723, 755, 965, 1309
BspMI ACCTGC 1 cut(s) 364
BspT104I TTCGAA 1 cut(s) 1029
BspT107I GGYRCC 1 cut(s) 691
BsrDI GCAATG 2 cut(s) 251, 566
BsrFI RCCGGY 1 cut(s) 1018
BsrI ACTGG 4 cut(s) 279, 331, 585, 1298
BssAI RCCGGY 1 cut(s) 1018
BssMI GATC 3 cut(s) 133, 387, 394
Bst2UI CCWGG 1 cut(s) 1305
Bst4CI ACNGT 3 cut(s) 955, 1276, 1286
BstBAI YACGTR 2 cut(s) 57, 1320
BstBI TTCGAA 1 cut(s) 1029
BstC8I GCNNGC 3 cut(s) 829, 1020, 1101
BstDEI CTNAG 5 cut(s) 492, 763, 792, 823, 1220
BstF5I GGATG 2 cut(s) 1234, 1364
BstKTI GATC 3 cut(s) 136, 390, 397
BstMAI GTCTC 3 cut(s) 708, 826, 894
BstMBI GATC 3 cut(s) 133, 387, 394
BstMWI GCNNNNNNNGC 2 cut(s) 568, 1105
BstNI CCWGG 1 cut(s) 1305
BstSCI CCNGG 2 cut(s) 1303, 1352
BstSLI GKGCMC 2 cut(s) 694, 1359
BstV1I GCAGC 2 cut(s) 500, 1163
BstV2I GAAGAC 2 cut(s) 312, 609
Bsu15I ATCGAT 1 cut(s) 393
BsuI GTATCC 2 cut(s) 330, 1192
BsuRI GGCC 6 cut(s) 424, 732, 831, 1075, 1179, 1225
BsuTUI ATCGAT 1 cut(s) 393
BtrI CACGTC 1 cut(s) 718
BtsCI GGATG 2 cut(s) 1234, 1364
BtsIMutI CAGTG 3 cut(s) 286, 592, 1291
BveI ACCTGC 1 cut(s) 364
Cac8I GCNNGC 3 cut(s) 829, 1020, 1101
CciI TCATGA 1 cut(s) 438
Cfr10I RCCGGY 1 cut(s) 1018
Cfr13I GGNCC 6 cut(s) 353, 423, 721, 753, 963, 1307
ClaI ATCGAT 1 cut(s) 393
Csp6I GTAC 2 cut(s) 58, 655
CviAII CATG 5 cut(s) 115, 409, 439, 907, 1270
CviQI GTAC 2 cut(s) 58, 655
DdeI CTNAG 5 cut(s) 492, 763, 792, 823, 1220
DpnI GATC 3 cut(s) 135, 389, 396
DpnII GATC 3 cut(s) 133, 387, 394
EaeI YGGCCR 1 cut(s) 730
Eco147I AGGCCT 3 cut(s) 1075, 1179, 1225
Eco24I GRGCYC 1 cut(s) 774
Eco47I GGWCC 5 cut(s) 353, 721, 753, 963, 1307
Eco57I CTGAAG 3 cut(s) 621, 953, 1227
Eco88I CYCGRG 1 cut(s) 711
EcoO109I RGGNCCY 2 cut(s) 753, 963
EcoRII CCWGG 1 cut(s) 1303
EcoT38I GRGCYC 1 cut(s) 774
Esp3I CGTCTC 2 cut(s) 708, 826
FaeI CATG 5 cut(s) 118, 412, 442, 910, 1273
FatI CATG 5 cut(s) 114, 408, 438, 906, 1269
FbaI TGATCA 1 cut(s) 387
Fnu4HI GCNGC 3 cut(s) 489, 848, 1152
FokI GGATG 2 cut(s) 1221, 1351
FriOI GRGCYC 1 cut(s) 774
Fsp4HI GCNGC 3 cut(s) 489, 848, 1152
FspBI CTAG 1 cut(s) 191
GluI GCNGC 3 cut(s) 489, 848, 1152
GsaI CCCAGC 1 cut(s) 1107
HaeIII GGCC 6 cut(s) 424, 732, 831, 1075, 1179, 1225
HapII CCGG 3 cut(s) 1019, 1264, 1353
Hin1II CATG 5 cut(s) 118, 412, 442, 910, 1273
HinfI GANTC 2 cut(s) 539, 553
HpaII CCGG 3 cut(s) 1019, 1264, 1353
HphI GGTGA 6 cut(s) 190, 205, 548, 1006, 1248, 1253
Hpy166II GTNNAC 3 cut(s) 655, 721, 1291
Hpy188I TCNGA 1 cut(s) 972
Hpy188III TCNNGA 9 cut(s) 347, 418, 439, 599, 711, 713, 751, 961, 1368
Hpy8I GTNNAC 3 cut(s) 655, 721, 1291
Hpy99I CGWCG 1 cut(s) 779
HpyAV CCTTC 1 cut(s) 977
HpyCH4III ACNGT 3 cut(s) 955, 1276, 1286
HpyCH4IV ACGT 5 cut(s) 56, 606, 717, 1010, 1319
HpyCH4V TGCA 6 cut(s) 34, 146, 231, 381, 408, 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 568, 1105
HpyF3I CTNAG 5 cut(s) 492, 763, 792, 823, 1220
HpySE526I ACGT 5 cut(s) 56, 606, 717, 1010, 1319
Hsp92II CATG 5 cut(s) 118, 412, 442, 910, 1273
KroI GCCGGC 1 cut(s) 1018
KroNI GCCGGC 1 cut(s) 1020
Ksp22I TGATCA 1 cut(s) 387
Kzo9I GATC 3 cut(s) 133, 387, 394
LmnI GCTCC 2 cut(s) 502, 1141
Lsp1109I GCAGC 2 cut(s) 500, 1163
LweI GCATC 3 cut(s) 43, 475, 756
MaeI CTAG 1 cut(s) 191
MaeII ACGT 5 cut(s) 56, 606, 717, 1010, 1319
MaeIII GTNAC 4 cut(s) 50, 589, 884, 994
MalI GATC 3 cut(s) 135, 389, 396
MboI GATC 3 cut(s) 133, 387, 394
MboII GAAGA 6 cut(s) 179, 197, 317, 614, 832, 1100
MhlI GDGCHC 3 cut(s) 694, 774, 1359
MlsI TGGCCA 1 cut(s) 732
MluNI TGGCCA 1 cut(s) 732
Mox20I TGGCCA 1 cut(s) 732
MroNI GCCGGC 1 cut(s) 1018
MroXI GAANNNNTTC 1 cut(s) 638
MscI TGGCCA 1 cut(s) 732
MseI TTAA 4 cut(s) 75, 287, 705, 1193
MslI CAYNNNNRTG 1 cut(s) 218
Msp20I TGGCCA 1 cut(s) 732
MspA1I CMGCKG 1 cut(s) 850
MspI CCGG 3 cut(s) 1019, 1264, 1353
MspR9I CCNGG 2 cut(s) 1305, 1354
Mva1269I GAATGC 1 cut(s) 944
MvaI CCWGG 1 cut(s) 1305
MwoI GCNNNNNNNGC 2 cut(s) 568, 1105
NaeI GCCGGC 1 cut(s) 1020
NciI CCSGG 1 cut(s) 1354
NdeII GATC 3 cut(s) 133, 387, 394
NgoMIV GCCGGC 1 cut(s) 1018
NlaIII CATG 5 cut(s) 118, 412, 442, 910, 1273
NlaIV GGNNCC 5 cut(s) 693, 723, 755, 965, 1309
NmuCI GTSAC 3 cut(s) 589, 884, 994
NspV TTCGAA 1 cut(s) 1029
PaeR7I CTCGAG 1 cut(s) 711
PagI TCATGA 1 cut(s) 438
PceI AGGCCT 3 cut(s) 1075, 1179, 1225
PcsI WCGNNNNNNNCGW 2 cut(s) 423, 774
PctI GAATGC 1 cut(s) 944
PdiI GCCGGC 1 cut(s) 1020
PdmI GAANNNNTTC 1 cut(s) 638
PfeI GAWTC 2 cut(s) 539, 553
PkrI GCNGC 3 cut(s) 490, 849, 1153
Ppu21I YACGTR 2 cut(s) 57, 1320
PpuMI RGGWCCY 2 cut(s) 753, 963
Psp5II RGGWCCY 2 cut(s) 753, 963
Psp6I CCWGG 1 cut(s) 1303
PspFI CCCAGC 1 cut(s) 1103
PspGI CCWGG 1 cut(s) 1303
PspN4I GGNNCC 5 cut(s) 693, 723, 755, 965, 1309
PspPI GGNCC 6 cut(s) 353, 423, 721, 753, 963, 1307
PspPPI RGGWCCY 2 cut(s) 753, 963
RsaI GTAC 2 cut(s) 59, 656
RsaNI GTAC 2 cut(s) 58, 655
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 4 cut(s) 75, 287, 705, 1193
SatI GCNGC 3 cut(s) 489, 848, 1152
Sau3AI GATC 3 cut(s) 133, 387, 394
Sau96I GGNCC 6 cut(s) 353, 423, 721, 753, 963, 1307
ScrFI CCNGG 2 cut(s) 1305, 1354
SduI GDGCHC 3 cut(s) 694, 774, 1359
SfaNI GCATC 3 cut(s) 43, 475, 756
Sfr274I CTCGAG 1 cut(s) 711
SfuI TTCGAA 1 cut(s) 1029
SinI GGWCC 5 cut(s) 353, 721, 753, 963, 1307
SlaI CTCGAG 1 cut(s) 711
SmiMI CAYNNNNRTG 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 711
SmoI CTYRAG 1 cut(s) 711
SseBI AGGCCT 3 cut(s) 1075, 1179, 1225
SsiI CCGC 3 cut(s) 562, 848, 894
SspI AATATT 1 cut(s) 321
SspMI CTAG 1 cut(s) 191
StuI AGGCCT 3 cut(s) 1075, 1179, 1225
StyD4I CCNGG 2 cut(s) 1303, 1352
TaaI ACNGT 3 cut(s) 955, 1276, 1286
TaiI ACGT 5 cut(s) 59, 609, 720, 1013, 1322
TaqI TCGA 5 cut(s) 297, 393, 483, 712, 1029
TauI GCSGC 1 cut(s) 850
TfiI GAWTC 2 cut(s) 539, 553
Tru1I TTAA 4 cut(s) 75, 287, 705, 1193
Tru9I TTAA 4 cut(s) 75, 287, 705, 1193
TscAI CASTG 3 cut(s) 286, 592, 1298
TseFI GTSAC 3 cut(s) 589, 884, 994
TseI GCWGC 2 cut(s) 488, 1151
Tsp45I GTSAC 3 cut(s) 589, 884, 994
TspGWI ACGGA 1 cut(s) 446
TspRI CASTG 3 cut(s) 286, 592, 1298
VpaK11BI GGWCC 5 cut(s) 353, 721, 753, 963, 1307
XapI RAATTY 3 cut(s) 413, 802, 1184
XcmI CCANNNNNNNNNTGG 1 cut(s) 323
XhoI CTCGAG 1 cut(s) 711
XmnI GAANNNNTTC 1 cut(s) 638
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.