Prupe.8G194900_v2.0.a1

Protein trichome birefringence-like 19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0013701
Physical Location & Seq
Reverse (-)
18753747 .. 18754947
1201 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G194900.1

Sequence Viewer

Length: 732 bp
ATGAAGTTTCATGCCATTGATCTCCCTAATGGAAAATACAAACCCAACAACACCCACAAAAATCTTTTTCTGCTAAACCTCTCTGTCAACATCTCAAATTCCCCATTGCCATCTCCAAAGAGCAATGCCGGTGGTTCGAAAAGCATCGAAAAACAAGATCAATGCCAGATATTTAGTGGGAATGTGACTTGCAAATTGATCATTGAACAGCAAAACTGCATGAAGTTTGGGAGACCAGATACGGAGTTCATGAAATGGAGGTGGAAGCCTGATGCTTGTTGTTGTGAGTTGCCCTTGTTTGATGCAACTCAGTTCTTGGAGCTTGTTAGAGGCAAGTCATTGGCTTTCCTTGGCGACTCTGTTGGAAAAAATCAAATGCAGTCATTGCTTTGCCTCTTAGCCAGACATTTCTCACAAAAATATTCCTCAAACACAGATTACTTCAAGCGCTATTTCTACCATGATTACAATTTCACCATCGCAACTCTCTGGTCCCCCTACTTGGTTAAATCTAGAGACGCAGACACCAGTGGAAATGACATCAACAGCCTCATGAGCCTCTACTTAGATGAGCTGGACGAGGCATGGCTAACTCGGGTCGTACAATTCGACTATGTGATCGTCTCAGCAGGACAATGGTTCTTTCGGACACTGACATACCACGAACATGACAACATGACATTCTGCTTGGCTTTACTTGTTGACACGTGGCGCCTAGGCGCTATTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

244

Amino Acids

28.05

Weight (kDa)

7.56

Isoelectric Point (pI)

37.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013701)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g45620
malus_domestica MD17G1072300.v1.1
prunus_persica Prupe.3G242400_v2.0.a1 Prupe.3G242900_v2.0.a1 Prupe.8G194900_v2.0.a1
pyrus_communis pycom09g00780 pycom17g07180 pycom17g07330
rosa_chinensis RchiOBHm_Chr2g0163771
rosa_laevigata RLG00000021414
rosa_multiflora Rmu_sc0004918.1_g000002
rosa_roxburghii Rroxscaffold_2G00087060
rosa_rugosa Rorug02G0504500
rosa_samantha Rh2AG572400 Rh2BG583000 Rh2CG553900 Rh2DG592700
rosa_wichuraiana Rw2G047310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 711
AcsI RAATTY 1 cut(s) 97
AcvI CACGTG 1 cut(s) 708
AcyI GRCGYC 1 cut(s) 712
AfaI GTAC 1 cut(s) 603
AfeI AGCGCT 1 cut(s) 449
AfiI CCNNNNNNNGG 1 cut(s) 502
AflIII ACRYGT 1 cut(s) 705
AgsI TTSAA 2 cut(s) 206, 445
AluBI AGCT 2 cut(s) 322, 574
AluI AGCT 2 cut(s) 322, 574
Alw26I GTCTC 3 cut(s) 226, 510, 628
Ama87I CYCGRG 1 cut(s) 594
Aor51HI AGCGCT 1 cut(s) 449
ApoI RAATTY 1 cut(s) 97
AspA2I CCTAGG 1 cut(s) 715
AspLEI GCGC 3 cut(s) 450, 714, 722
AspS9I GGNCC 1 cut(s) 492
AsuHPI GGTGA 1 cut(s) 466
AsuII TTCGAA 1 cut(s) 137
AvaI CYCGRG 1 cut(s) 594
AvaII GGWCC 1 cut(s) 492
AvrII CCTAGG 1 cut(s) 715
BanI GGYRCC 1 cut(s) 711
BbrPI CACGTG 1 cut(s) 708
BccI CCATC 2 cut(s) 118, 485
BclI TGATCA 1 cut(s) 198
BcoDI GTCTC 3 cut(s) 226, 510, 628
BfaI CTAG 2 cut(s) 513, 716
BfoI RGCGCY 3 cut(s) 451, 715, 723
BlnI CCTAGG 1 cut(s) 715
Bme18I GGWCC 1 cut(s) 492
BmeT110I CYCGRG 1 cut(s) 594
BmgT120I GGNCC 1 cut(s) 492
BmiI GGNNCC 2 cut(s) 494, 713
BmsI GCATC 3 cut(s) 153, 262, 292
Bpu14I TTCGAA 1 cut(s) 137
BsaAI YACGTR 1 cut(s) 708
BsaHI GRCGYC 1 cut(s) 712
BsaI GGTCTC 1 cut(s) 226
BsaJI CCNNGG 2 cut(s) 349, 715
Bsc4I CCNNNNNNNGG 1 cut(s) 502
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 528
Bse3DI GCAATG 3 cut(s) 104, 130, 383
BseDI CCNNGG 2 cut(s) 349, 715
BseLI CCNNNNNNNGG 1 cut(s) 502
BseMI GCAATG 3 cut(s) 104, 130, 383
BseMII CTCAG 2 cut(s) 323, 639
BseNI ACTGG 1 cut(s) 528
BshNI GGYRCC 1 cut(s) 711
BsiHKCI CYCGRG 1 cut(s) 594
BsiSI CCGG 1 cut(s) 129
BslFI GGGAC 1 cut(s) 478
BslI CCNNNNNNNGG 1 cut(s) 502
BsmAI GTCTC 3 cut(s) 226, 510, 628
BsmBI CGTCTC 2 cut(s) 510, 628
BsmFI GGGAC 1 cut(s) 478
Bso31I GGTCTC 1 cut(s) 226
BsoBI CYCGRG 1 cut(s) 594
Bsp119I TTCGAA 1 cut(s) 137
Bsp143I GATC 4 cut(s) 19, 157, 198, 618
BspCNI CTCAG 2 cut(s) 322, 638
BspHI TCATGA 2 cut(s) 249, 552
BspLI GGNNCC 2 cut(s) 494, 713
BspT104I TTCGAA 1 cut(s) 137
BspT107I GGYRCC 1 cut(s) 711
BspTNI GGTCTC 1 cut(s) 226
BsrDI GCAATG 3 cut(s) 104, 130, 383
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 1 cut(s) 528
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 349, 715
BssMI GATC 4 cut(s) 19, 157, 198, 618
BssNI GRCGYC 1 cut(s) 712
BssT1I CCWWGG 2 cut(s) 349, 715
BstACI GRCGYC 1 cut(s) 712
BstAPI GCANNNNNTGC 1 cut(s) 385
BstBAI YACGTR 1 cut(s) 708
BstBI TTCGAA 1 cut(s) 137
BstDEI CTNAG 4 cut(s) 309, 397, 565, 625
BstH2I RGCGCY 3 cut(s) 451, 715, 723
BstHHI GCGC 3 cut(s) 450, 714, 722
BstKTI GATC 4 cut(s) 22, 160, 201, 621
BstMAI GTCTC 3 cut(s) 226, 510, 628
BstMBI GATC 4 cut(s) 19, 157, 198, 618
BstMWI GCNNNNNNNGC 2 cut(s) 385, 555
BtgZI GCGATG 1 cut(s) 463
BtsIMutI CAGTG 2 cut(s) 535, 650
CciI TCATGA 2 cut(s) 249, 552
CfoI GCGC 3 cut(s) 450, 714, 722
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 492
CseI GACGC 1 cut(s) 527
Csp6I GTAC 1 cut(s) 602
CspCI CAANNNNNGTGG 2 cut(s) 112, 147
CviAII CATG 8 cut(s) 11, 220, 250, 461, 553, 585, 668, 676
CviJI RGCY 9 cut(s) 268, 322, 344, 401, 549, 558, 574, 589, 692
CviKI_1 RGCY 9 cut(s) 268, 322, 344, 401, 549, 558, 574, 589, 692
CviQI GTAC 1 cut(s) 602
DdeI CTNAG 4 cut(s) 309, 397, 565, 625
DinI GGCGCC 1 cut(s) 713
DpnI GATC 4 cut(s) 21, 159, 200, 620
DpnII GATC 4 cut(s) 19, 157, 198, 618
Eco130I CCWWGG 2 cut(s) 349, 715
Eco31I GGTCTC 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 492
Eco47III AGCGCT 1 cut(s) 449
Eco72I CACGTG 1 cut(s) 708
Eco88I CYCGRG 1 cut(s) 594
EcoT14I CCWWGG 2 cut(s) 349, 715
EgeI GGCGCC 1 cut(s) 713
EheI GGCGCC 1 cut(s) 713
ErhI CCWWGG 2 cut(s) 349, 715
Esp3I CGTCTC 2 cut(s) 510, 628
FaeI CATG 8 cut(s) 14, 223, 253, 464, 556, 588, 671, 679
FaqI GGGAC 1 cut(s) 478
FatI CATG 8 cut(s) 10, 219, 249, 460, 552, 584, 667, 675
FbaI TGATCA 1 cut(s) 198
FspBI CTAG 2 cut(s) 513, 716
GlaI GCGC 3 cut(s) 449, 713, 721
HaeII RGCGCY 3 cut(s) 451, 715, 723
HapII CCGG 1 cut(s) 129
HgaI GACGC 1 cut(s) 527
HhaI GCGC 3 cut(s) 450, 714, 722
Hin1I GRCGYC 1 cut(s) 712
Hin1II CATG 8 cut(s) 14, 223, 253, 464, 556, 588, 671, 679
Hin6I GCGC 3 cut(s) 448, 712, 720
HinP1I GCGC 3 cut(s) 448, 712, 720
HincII GTYRAC 2 cut(s) 88, 703
HindII GTYRAC 2 cut(s) 88, 703
HinfI GANTC 1 cut(s) 356
HpaII CCGG 1 cut(s) 129
HphI GGTGA 1 cut(s) 466
Hpy166II GTNNAC 2 cut(s) 88, 703
Hpy188I TCNGA 1 cut(s) 648
Hpy188III TCNNGA 3 cut(s) 250, 513, 553
Hpy8I GTNNAC 2 cut(s) 88, 703
HpyCH4IV ACGT 1 cut(s) 707
HpyCH4V TGCA 4 cut(s) 192, 219, 305, 379
HpyF10VI GCNNNNNNNGC 2 cut(s) 385, 555
HpyF3I CTNAG 4 cut(s) 309, 397, 565, 625
HpySE526I ACGT 1 cut(s) 707
Hsp92I GRCGYC 1 cut(s) 712
Hsp92II CATG 8 cut(s) 14, 223, 253, 464, 556, 588, 671, 679
HspAI GCGC 3 cut(s) 448, 712, 720
KasI GGCGCC 1 cut(s) 711
Ksp22I TGATCA 1 cut(s) 198
Kzo9I GATC 4 cut(s) 19, 157, 198, 618
LmnI GCTCC 1 cut(s) 319
LpnPI CCDG 9 cut(s) 142, 179, 249, 282, 415, 475, 541, 560, 615
LweI GCATC 3 cut(s) 153, 262, 292
MaeI CTAG 2 cut(s) 513, 716
MaeII ACGT 1 cut(s) 707
MaeIII GTNAC 1 cut(s) 184
MalI GATC 4 cut(s) 21, 159, 200, 620
MboI GATC 4 cut(s) 19, 157, 198, 618
MluCI AATT 4 cut(s) 97, 194, 469, 605
Mly113I GGCGCC 1 cut(s) 712
MlyI GAGTC 1 cut(s) 350
MmeI TCCRAC 1 cut(s) 343
MnlI CCTC 8 cut(s) 89, 252, 323, 404, 436, 560, 569, 574
MseI TTAA 1 cut(s) 507
MslI CAYNNNNRTG 1 cut(s) 666
MspI CCGG 1 cut(s) 129
MwoI GCNNNNNNNGC 2 cut(s) 385, 555
NarI GGCGCC 1 cut(s) 712
NdeII GATC 4 cut(s) 19, 157, 198, 618
NlaIII CATG 8 cut(s) 14, 223, 253, 464, 556, 588, 671, 679
NlaIV GGNNCC 2 cut(s) 494, 713
NmuCI GTSAC 1 cut(s) 184
NspV TTCGAA 1 cut(s) 137
PagI TCATGA 2 cut(s) 249, 552
PcsI WCGNNNNNNNCGW 1 cut(s) 606
PleI GAGTC 1 cut(s) 350
PluTI GGCGCC 1 cut(s) 715
PmaCI CACGTG 1 cut(s) 708
PmlI CACGTG 1 cut(s) 708
PpsI GAGTC 1 cut(s) 350
Ppu21I YACGTR 1 cut(s) 708
PspCI CACGTG 1 cut(s) 708
PspN4I GGNNCC 2 cut(s) 494, 713
PspPI GGNCC 1 cut(s) 492
RsaI GTAC 1 cut(s) 603
RsaNI GTAC 1 cut(s) 602
RseI CAYNNNNRTG 1 cut(s) 666
SaqAI TTAA 1 cut(s) 507
Sau3AI GATC 4 cut(s) 19, 157, 198, 618
Sau96I GGNCC 1 cut(s) 492
SchI GAGTC 1 cut(s) 350
SetI ASST 5 cut(s) 81, 263, 324, 576, 710
SfaNI GCATC 3 cut(s) 153, 262, 292
SfoI GGCGCC 1 cut(s) 713
SfuI TTCGAA 1 cut(s) 137
SinI GGWCC 1 cut(s) 492
SmiMI CAYNNNNRTG 1 cut(s) 666
Sse9I AATT 4 cut(s) 97, 194, 469, 605
SspDI GGCGCC 1 cut(s) 711
SspI AATATT 1 cut(s) 422
SspMI CTAG 2 cut(s) 513, 716
StyI CCWWGG 2 cut(s) 349, 715
TaiI ACGT 1 cut(s) 710
TaqI TCGA 3 cut(s) 137, 147, 609
TasI AATT 4 cut(s) 97, 194, 469, 605
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TscAI CASTG 2 cut(s) 535, 657
TseFI GTSAC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 4 cut(s) 17, 236, 238, 266
TspGWI ACGGA 1 cut(s) 257
TspRI CASTG 2 cut(s) 535, 657
VpaK11BI GGWCC 1 cut(s) 492
XapI RAATTY 1 cut(s) 97
XbaI TCTAGA 1 cut(s) 512
XcmI CCANNNNNNNNNTGG 1 cut(s) 173
XmaJI CCTAGG 1 cut(s) 715
XspI CTAG 2 cut(s) 513, 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.