Prupe.3G242900_v2.0.a1

Protein trichome birefringence-like 19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0013701
Physical Location & Seq
Reverse (-)
23574811 .. 23576582
1772 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G242900.1

Sequence Viewer

Length: 1269 bp
ATGAAATTTCATGCCATTGATCTCCCTAATGGAAAATACATACAACCCAACAACACCCACAAAAATCTTTTTCTACTTGCCCTTACCTTAGTGTTGCTGATTACAATCCCTCTCTGTCTAAACAACATCTCAAATTCCCCACTGCCGTCTCCTAAGAGCAATGCTGGAAGTTCGAAAAGCATCGAAAAAGAAGATCAATGCCAGATATTTACTGGGAACTGGGTTCCATATCCTGATGGACCTGCTTATTACACAAATGAAACTTGCAATCTGATCATTGATCAGCAAAACTGCATGAAGTTTGGGAGACCTGATACTGAGTTCATGACATGGAGGTGGAAGCCTGATGCTTGTGAGTTGCCCTTGTTTGATGCAGCTCAGTTCTTGGAGCTTGTTAGAGGCAAGTCATTGGCTTTCCTTGGTGACTCCGTGGGAAGAAATCAAATGCAGTCATTGCTTTGCCTCTTAGCCACTGTGACTTATCCTGAGGACATTTCTCACAAATATTCCTCAAACACAGATTACTTCAAGCGCTATGTCTACAATGATCACAATTTCACCATAGCAAATCTCTGGTCCCCCTACTTGGTTAAATCTAGAGACGTAGATCCCAGGGGAAATGACTTTAACAGCCTCATGAGCCTCTACTTAGATGAGCCGGACGAGGCATGGCTAACTCTGGTCGAACAATTCGACTATGTGATCGTCTCAGTAGGACATTGGTTCTTCCGGCCACTGATATACCACGAAAATGGTCGCGTTATCGGGTGTCACAAGTGCGAACAAGACAACATGACGTCGTTTGTCACCTCCTACGGATACAGAAAGGCCTTTCGAACGTTGTTTAAAACTCTTGGAAGCCTTAAAAACTACAAGGGGGTGACATTTCTGAGGACGTTTTCTCCATCACACTTTGAAAACGGGGCATGGAACGAGGGAGGGAACTGTGCGAGGACAAAGCCTTTTACCAAAGAAGAAACGAAGCTAGATGGGTATGTTTTGGAAATGTACTTGACTCAAGTGGAGGAGCTAAAAGCAGCGGAAGAGCAAGGCCTGCAGAGAGGCCTGCAGAGAGGCCTGCAGTTTAGGTTGATGGACACAACAGAAGCTATGTTGCTGAGGCCTGATGGACACCCAAACTTCTATGGACACTCACCTCATAGGAACATGACTCTTGCCGACTGTGTTCACTGGTGCTTGCCAGGCCCCATTGATGCGTGGAATGAGATCTTGCTATATATGTTGAAGACAGGGTACAGGCCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

423

Amino Acids

48.57

Weight (kDa)

6.19

Isoelectric Point (pI)

38.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013701)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g45620
malus_domestica MD17G1072300.v1.1
prunus_persica Prupe.3G242400_v2.0.a1 Prupe.3G242900_v2.0.a1 Prupe.8G194900_v2.0.a1
pyrus_communis pycom09g00780 pycom17g07180 pycom17g07330
rosa_chinensis RchiOBHm_Chr2g0163771
rosa_laevigata RLG00000021414
rosa_multiflora Rmu_sc0004918.1_g000002
rosa_roxburghii Rroxscaffold_2G00087060
rosa_rugosa Rorug02G0504500
rosa_samantha Rh2AG572400 Rh2BG583000 Rh2CG553900 Rh2DG592700
rosa_wichuraiana Rw2G047310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 800
Acc36I ACCTGC 1 cut(s) 250
AccI GTMKAC 1 cut(s) 540
AccII CGCG 1 cut(s) 759
AciI CCGC 1 cut(s) 1040
AclI AACGTT 1 cut(s) 839
AclWI GGATC 1 cut(s) 602
AcoI YGGCCR 1 cut(s) 731
AcsI RAATTY 2 cut(s) 5, 133
AcyI GRCGYC 1 cut(s) 797
AfaI GTAC 2 cut(s) 1010, 1256
AfeI AGCGCT 1 cut(s) 533
AfiI CCNNNNNNNGG 1 cut(s) 586
AgsI TTSAA 3 cut(s) 529, 917, 1246
AjnI CCWGG 2 cut(s) 611, 1201
AluBI AGCT 5 cut(s) 377, 391, 985, 1030, 1109
AluI AGCT 5 cut(s) 377, 391, 985, 1030, 1109
Alw26I GTCTC 4 cut(s) 153, 301, 594, 712
AlwI GGATC 1 cut(s) 602
Aor51HI AGCGCT 1 cut(s) 533
AoxI GGCC 8 cut(s) 731, 828, 1051, 1063, 1075, 1121, 1204, 1259
ApeKI GCWGC 2 cut(s) 374, 1037
ApoI RAATTY 2 cut(s) 5, 133
ArsI GACNNNNNNTTYG 2 cut(s) 560, 592
AspLEI GCGC 1 cut(s) 534
AspS9I GGNCC 3 cut(s) 239, 576, 1205
AsuHPI GGTGA 5 cut(s) 434, 550, 799, 892, 1146
AsuII TTCGAA 2 cut(s) 173, 835
AvaII GGWCC 2 cut(s) 239, 576
AxyI CCTNAGG 1 cut(s) 486
BarI GAAGNNNNNNTAC 1 cut(s) 1238
BbsI GAAGAC 1 cut(s) 1253
BbvCI CCTCAGC 1 cut(s) 1118
BbvI GCAGC 2 cut(s) 386, 1049
BccI CCATC 5 cut(s) 230, 913, 983, 1087, 1121
BceAI ACGGC 1 cut(s) 130
BciT130I CCWGG 2 cut(s) 613, 1203
BciVI GTATCC 1 cut(s) 812
BclI TGATCA 3 cut(s) 273, 280, 547
BcoDI GTCTC 4 cut(s) 153, 301, 594, 712
BfaI CTAG 2 cut(s) 597, 986
BfmI CTRYAG 3 cut(s) 1055, 1067, 1079
BfoI RGCGCY 1 cut(s) 535
BfuAI ACCTGC 1 cut(s) 250
BfuI GTATCC 1 cut(s) 812
BglII AGATCT 1 cut(s) 1227
BisI GCNGC 2 cut(s) 375, 1038
BlsI GCNGC 2 cut(s) 376, 1039
Bme1390I CCNGG 2 cut(s) 613, 1203
Bme18I GGWCC 2 cut(s) 239, 576
BmgT120I GGNCC 3 cut(s) 239, 576, 1205
BmiI GGNNCC 3 cut(s) 225, 578, 1207
BmrFI CCNGG 2 cut(s) 613, 1203
BmrI ACTGGG 2 cut(s) 222, 229
BmsI GCATC 4 cut(s) 189, 337, 361, 1204
BmuI ACTGGG 2 cut(s) 222, 229
BpiI GAAGAC 1 cut(s) 1253
Bpu10I CCTNAGC 1 cut(s) 1118
Bpu14I TTCGAA 2 cut(s) 173, 835
BpuEI CTTGAG 1 cut(s) 1002
BsaBI GATNNNNATC 1 cut(s) 104
BsaHI GRCGYC 1 cut(s) 797
BsaI GGTCTC 1 cut(s) 301
BsaJI CCNNGG 4 cut(s) 418, 429, 611, 612
BsaXI ACNNNNNCTCC 2 cut(s) 886, 916
Bsc4I CCNNNNNNNGG 1 cut(s) 586
Bse1I ACTGG 3 cut(s) 217, 224, 1196
Bse21I CCTNAGG 1 cut(s) 486
Bse3DI GCAATG 2 cut(s) 166, 452
Bse8I GATNNNNATC 1 cut(s) 104
BseBI CCWGG 2 cut(s) 613, 1203
BseDI CCNNGG 4 cut(s) 418, 429, 611, 612
BseJI GATNNNNATC 1 cut(s) 104
BseLI CCNNNNNNNGG 1 cut(s) 586
BseMI GCAATG 2 cut(s) 166, 452
BseMII CTCAG 6 cut(s) 309, 392, 477, 723, 881, 1109
BseNI ACTGG 3 cut(s) 217, 224, 1196
BseRI GAGGAG 1 cut(s) 1040
BseXI GCAGC 2 cut(s) 386, 1049
Bsh1236I CGCG 1 cut(s) 759
BshFI GGCC 8 cut(s) 733, 830, 1053, 1065, 1077, 1123, 1206, 1261
BsiSI CCGG 2 cut(s) 659, 730
BslFI GGGAC 1 cut(s) 562
BslI CCNNNNNNNGG 1 cut(s) 586
BsmAI GTCTC 4 cut(s) 153, 301, 594, 712
BsmBI CGTCTC 3 cut(s) 153, 594, 712
BsmFI GGGAC 1 cut(s) 562
BsnI GGCC 8 cut(s) 733, 830, 1053, 1065, 1077, 1123, 1206, 1261
Bso31I GGTCTC 1 cut(s) 301
Bsp119I TTCGAA 2 cut(s) 173, 835
Bsp143I GATC 8 cut(s) 19, 193, 273, 280, 547, 607, 702, 1227
BspACI CCGC 1 cut(s) 1040
BspANI GGCC 8 cut(s) 733, 830, 1053, 1065, 1077, 1123, 1206, 1261
BspCNI CTCAG 6 cut(s) 310, 391, 478, 722, 882, 1110
BspFNI CGCG 1 cut(s) 759
BspHI TCATGA 2 cut(s) 324, 636
BspLI GGNNCC 3 cut(s) 225, 578, 1207
BspMAI CTGCAG 3 cut(s) 1059, 1071, 1083
BspMI ACCTGC 1 cut(s) 250
BspPI GGATC 1 cut(s) 602
BspQI GCTCTTC 1 cut(s) 1038
BspT104I TTCGAA 2 cut(s) 173, 835
BspTNI GGTCTC 1 cut(s) 301
BsrDI GCAATG 2 cut(s) 166, 452
BsrI ACTGG 3 cut(s) 217, 224, 1196
BssECI CCNNGG 4 cut(s) 418, 429, 611, 612
BssMI GATC 8 cut(s) 19, 193, 273, 280, 547, 607, 702, 1227
BssNI GRCGYC 1 cut(s) 797
BssT1I CCWWGG 1 cut(s) 418
Bst2UI CCWGG 2 cut(s) 613, 1203
Bst4CI ACNGT 3 cut(s) 475, 947, 1184
Bst6I CTCTTC 1 cut(s) 1038
BstACI GRCGYC 1 cut(s) 797
BstAPI GCANNNNNTGC 2 cut(s) 454, 1054
BstBI TTCGAA 2 cut(s) 173, 835
BstC8I GCNNGC 4 cut(s) 1055, 1067, 1079, 1199
BstDSI CCRYGG 1 cut(s) 429
BstFNI CGCG 1 cut(s) 759
BstH2I RGCGCY 1 cut(s) 535
BstHHI GCGC 1 cut(s) 534
BstKTI GATC 8 cut(s) 22, 196, 276, 283, 550, 610, 705, 1230
BstMAI GTCTC 4 cut(s) 153, 301, 594, 712
BstMBI GATC 8 cut(s) 19, 193, 273, 280, 547, 607, 702, 1227
BstMWI GCNNNNNNNGC 4 cut(s) 454, 639, 1054, 1203
BstNI CCWGG 2 cut(s) 613, 1203
BstSCI CCNGG 2 cut(s) 611, 1201
BstSFI CTRYAG 3 cut(s) 1055, 1067, 1079
BstUI CGCG 1 cut(s) 759
BstV1I GCAGC 2 cut(s) 386, 1049
BstV2I GAAGAC 1 cut(s) 1253
BstX2I RGATCY 2 cut(s) 607, 1227
BstXI CCANNNNNNTGG 1 cut(s) 752
BstYI RGATCY 2 cut(s) 607, 1227
Bsu36I CCTNAGG 1 cut(s) 486
BsuI GTATCC 1 cut(s) 812
BsuRI GGCC 8 cut(s) 733, 830, 1053, 1065, 1077, 1123, 1206, 1261
BtgI CCRYGG 1 cut(s) 429
BtsI GCAGTG 1 cut(s) 140
BtsIMutI CAGTG 4 cut(s) 140, 471, 734, 1189
BveI ACCTGC 1 cut(s) 250
Cac8I GCNNGC 4 cut(s) 1055, 1067, 1079, 1199
CciI TCATGA 2 cut(s) 324, 636
CfoI GCGC 1 cut(s) 534
Cfr13I GGNCC 3 cut(s) 239, 576, 1205
Csp6I GTAC 2 cut(s) 1009, 1255
CviAII CATG 9 cut(s) 11, 295, 325, 330, 637, 669, 793, 927, 1168
CviQI GTAC 2 cut(s) 1009, 1255
DpnI GATC 8 cut(s) 21, 195, 275, 282, 549, 609, 704, 1229
DpnII GATC 8 cut(s) 19, 193, 273, 280, 547, 607, 702, 1227
DraI TTTAAA 1 cut(s) 847
EaeI YGGCCR 1 cut(s) 731
Eam1104I CTCTTC 1 cut(s) 1038
EarI CTCTTC 1 cut(s) 1038
Eco130I CCWWGG 1 cut(s) 418
Eco147I AGGCCT 5 cut(s) 830, 1053, 1065, 1077, 1123
Eco31I GGTCTC 1 cut(s) 301
Eco47I GGWCC 2 cut(s) 239, 576
Eco47III AGCGCT 1 cut(s) 533
Eco81I CCTNAGG 1 cut(s) 486
EcoO109I RGGNCCY 1 cut(s) 1205
EcoRII CCWGG 2 cut(s) 611, 1201
EcoT14I CCWWGG 1 cut(s) 418
ErhI CCWWGG 1 cut(s) 418
Esp3I CGTCTC 3 cut(s) 153, 594, 712
FaeI CATG 9 cut(s) 14, 298, 328, 333, 640, 672, 796, 930, 1171
FaqI GGGAC 1 cut(s) 562
FatI CATG 9 cut(s) 10, 294, 324, 329, 636, 668, 792, 926, 1167
FbaI TGATCA 3 cut(s) 273, 280, 547
FblI GTMKAC 1 cut(s) 540
Fnu4HI GCNGC 2 cut(s) 375, 1038
Fsp4HI GCNGC 2 cut(s) 375, 1038
FspBI CTAG 2 cut(s) 597, 986
GlaI GCGC 1 cut(s) 533
GluI GCNGC 2 cut(s) 375, 1038
HaeII RGCGCY 1 cut(s) 535
HaeIII GGCC 8 cut(s) 733, 830, 1053, 1065, 1077, 1123, 1206, 1261
HapII CCGG 2 cut(s) 659, 730
HhaI GCGC 1 cut(s) 534
Hin1I GRCGYC 1 cut(s) 797
Hin1II CATG 9 cut(s) 14, 298, 328, 333, 640, 672, 796, 930, 1171
Hin6I GCGC 1 cut(s) 532
HinP1I GCGC 1 cut(s) 532
HinfI GANTC 3 cut(s) 425, 1015, 1171
HpaII CCGG 2 cut(s) 659, 730
HphI GGTGA 5 cut(s) 434, 550, 799, 892, 1146
Hpy166II GTNNAC 2 cut(s) 541, 1189
Hpy188I TCNGA 2 cut(s) 273, 891
Hpy188III TCNNGA 5 cut(s) 233, 325, 485, 597, 637
Hpy8I GTNNAC 2 cut(s) 541, 1189
Hpy99I CGWCG 1 cut(s) 802
HpyCH4III ACNGT 3 cut(s) 475, 947, 1184
HpyCH4IV ACGT 4 cut(s) 603, 797, 839, 896
HpyCH4V TGCA 7 cut(s) 267, 294, 374, 448, 1057, 1069, 1081
HpyF10VI GCNNNNNNNGC 4 cut(s) 454, 639, 1054, 1203
HpySE526I ACGT 4 cut(s) 603, 797, 839, 896
Hsp92I GRCGYC 1 cut(s) 797
Hsp92II CATG 9 cut(s) 14, 298, 328, 333, 640, 672, 796, 930, 1171
HspAI GCGC 1 cut(s) 532
Ksp22I TGATCA 3 cut(s) 273, 280, 547
Kzo9I GATC 8 cut(s) 19, 193, 273, 280, 547, 607, 702, 1227
LguI GCTCTTC 1 cut(s) 1038
LmnI GCTCC 2 cut(s) 388, 1027
Lsp1109I GCAGC 2 cut(s) 386, 1049
LweI GCATC 4 cut(s) 189, 337, 361, 1204
MaeI CTAG 2 cut(s) 597, 986
MaeII ACGT 4 cut(s) 603, 797, 839, 896
MaeIII GTNAC 5 cut(s) 422, 475, 770, 805, 880
MalI GATC 8 cut(s) 21, 195, 275, 282, 549, 609, 704, 1229
MboI GATC 8 cut(s) 19, 193, 273, 280, 547, 607, 702, 1227
MboII GAAGA 6 cut(s) 203, 447, 718, 986, 1055, 1258
MflI RGATCY 2 cut(s) 607, 1227
MluCI AATT 4 cut(s) 5, 133, 553, 689
MlyI GAGTC 3 cut(s) 419, 1009, 1165
MseI TTAA 4 cut(s) 591, 627, 846, 864
MslI CAYNNNNRTG 2 cut(s) 334, 750
MspA1I CMGCKG 1 cut(s) 1040
MspI CCGG 2 cut(s) 659, 730
MspR9I CCNGG 2 cut(s) 613, 1203
MvaI CCWGG 2 cut(s) 613, 1203
MvnI CGCG 1 cut(s) 759
MwoI GCNNNNNNNGC 4 cut(s) 454, 639, 1054, 1203
NdeII GATC 8 cut(s) 19, 193, 273, 280, 547, 607, 702, 1227
NlaIII CATG 9 cut(s) 14, 298, 328, 333, 640, 672, 796, 930, 1171
NlaIV GGNNCC 3 cut(s) 225, 578, 1207
NmuCI GTSAC 5 cut(s) 422, 475, 770, 805, 880
NspV TTCGAA 2 cut(s) 173, 835
PagI TCATGA 2 cut(s) 324, 636
PasI CCCWGGG 1 cut(s) 612
PceI AGGCCT 5 cut(s) 830, 1053, 1065, 1077, 1123
PciSI GCTCTTC 1 cut(s) 1038
PcsI WCGNNNNNNNCGW 1 cut(s) 690
PkrI GCNGC 2 cut(s) 376, 1039
PleI GAGTC 3 cut(s) 419, 1009, 1165
PpsI GAGTC 3 cut(s) 419, 1009, 1165
Psp1406I AACGTT 1 cut(s) 839
Psp6I CCWGG 2 cut(s) 611, 1201
PspGI CCWGG 2 cut(s) 611, 1201
PspN4I GGNNCC 3 cut(s) 225, 578, 1207
PspPI GGNCC 3 cut(s) 239, 576, 1205
PstI CTGCAG 3 cut(s) 1059, 1071, 1083
PsuI RGATCY 2 cut(s) 607, 1227
RsaI GTAC 2 cut(s) 1010, 1256
RsaNI GTAC 2 cut(s) 1009, 1255
RseI CAYNNNNRTG 2 cut(s) 334, 750
SapI GCTCTTC 1 cut(s) 1038
SaqAI TTAA 4 cut(s) 591, 627, 846, 864
SatI GCNGC 2 cut(s) 375, 1038
Sau3AI GATC 8 cut(s) 19, 193, 273, 280, 547, 607, 702, 1227
Sau96I GGNCC 3 cut(s) 239, 576, 1205
SchI GAGTC 3 cut(s) 419, 1009, 1165
ScrFI CCNGG 2 cut(s) 613, 1203
SfaNI GCATC 4 cut(s) 189, 337, 361, 1204
SfcI CTRYAG 3 cut(s) 1055, 1067, 1079
SfuI TTCGAA 2 cut(s) 173, 835
SinI GGWCC 2 cut(s) 239, 576
SmiMI CAYNNNNRTG 2 cut(s) 334, 750
SmlI CTYRAG 1 cut(s) 1017
SmoI CTYRAG 1 cut(s) 1017
Sse9I AATT 4 cut(s) 5, 133, 553, 689
SseBI AGGCCT 5 cut(s) 830, 1053, 1065, 1077, 1123
SsiI CCGC 1 cut(s) 1040
SspI AATATT 1 cut(s) 506
SspMI CTAG 2 cut(s) 597, 986
StuI AGGCCT 5 cut(s) 830, 1053, 1065, 1077, 1123
StyD4I CCNGG 2 cut(s) 611, 1201
StyI CCWWGG 1 cut(s) 418
TaaI ACNGT 3 cut(s) 475, 947, 1184
TaiI ACGT 4 cut(s) 606, 800, 842, 899
TaqI TCGA 5 cut(s) 173, 183, 684, 693, 835
TasI AATT 4 cut(s) 5, 133, 553, 689
TatI WGTACW 1 cut(s) 1008
Tru1I TTAA 4 cut(s) 591, 627, 846, 864
Tru9I TTAA 4 cut(s) 591, 627, 846, 864
TscAI CASTG 4 cut(s) 147, 478, 741, 1196
TseFI GTSAC 5 cut(s) 422, 475, 770, 805, 880
TseI GCWGC 2 cut(s) 374, 1037
Tsp45I GTSAC 5 cut(s) 422, 475, 770, 805, 880
TspDTI ATGAA 4 cut(s) 17, 273, 311, 313
TspGWI ACGGA 2 cut(s) 418, 831
TspRI CASTG 4 cut(s) 147, 478, 741, 1196
VpaK11BI GGWCC 2 cut(s) 239, 576
XapI RAATTY 2 cut(s) 5, 133
XbaI TCTAGA 1 cut(s) 596
XcmI CCANNNNNNNNNTGG 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 540
XspI CTAG 2 cut(s) 597, 986
ZraI GACGTC 1 cut(s) 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.