Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005242

Physical Location & Seq

Genomic Coordinates Reverse (-)

24787821 .. 24789898

Gene Structure 2078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G262500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGGCTGGTTGCATGTCAACCCCATCCAAAACAATTAAATCACGGAAAAAACACTGTCAGCAGGTCATCAAACGCCATAAAAAGGCAACCTGCTCTGCTTCAGATAGTACCAAGAAAAGAAATACCAGTTTCAAGAAAATAAATAGCGATGCAGGAGATTGCATGAGTGACTATGCTGTCAGTGAGTTTGTTTATGTGGACTTTGAGAATGGTGCAACAACTACTCACAGAAGATCTAAGGTTCCTAATTCAACATTCCATCTCACCCAGCTGCAATGGCACCACAGTCAATATGATTTGAATGTAATTTGCCAAGAGGAAGCTGACTCAGTGAGTATTCTGGAGTCTGACTCGGATGATGACTTTATCAGTATACATGGAGATGGTTTTCCATTAGCAAGCAATCCAGTTGGGAATATCTCAAGTGGCCAAGTACTTCAGTACGAAAGATCTGCTCGCTTTGTTGATAATGGGTGTAAGTATGAAGAATACCAAAGCTATATGAAAATAGATGGAGGTAAATCAGATAAAATCACAGGCAAAGATGAGCGCAGGGAATCAAATCAGTTTTCGCTTATTAGTACCCAGGGCTATGAGCTTTCTCGCCTAGGGAAGGCTGATGAAGTTTGCAGTAAGAGGAAGAATATATTAGATCACTCTTATGGAAGCTTTAAAGGACTTATAGAGGATGGACGTGATTCTAATGAAAAAATTCAAGACAATGCCCTGAAATCCGGCTTATCTCAATTGGTACCTTATGTAAGTTTCAACGATAAGATCCTAAGTGCAGAGAGTTTGGTTCTGCAGTCCCAGAGAAAGCCATTAGCCGTTTTCAGACTTTCTTTTAAAAGGAGAGCCAGTGATGCAGAAGAAACCATTGAACAATGTCAATCAAAAAGGTTTCTGTATTGGCCTAGACCAGGATATATCATTCCATTTTGTAAAGTAGAGATGCCGACTTCAGGATCTTGGTCTGAGATTCCACCCTCAACTTTTAAATTCGGTGGTGAGAACTATTTCAAATTACGAAAGTCAACTGCTCCGAACTACAGTCCATATACTCCAATAGGTGTTGATGTGTTTGTATGCCCCAAAAAGATACATCACATTGCCCAGCATCTTGAGCTTCTCAAAGTGAAAGCAAATGGGAAATTGCCTACTTATCCTGCTGCAATGTTTCTTCGTGATAGTGATGGAGAGGAGATGAGTCTTGTAATGTATTTCAAAGTTTCTGAGAATTTTGATAAAGACATCTCTCCTCAATTCCAAGACAGCATCAAGAAAATGGTTGACGATGAGACGGAAAAAGTTAAAGGATTCGCAAACGGAATAGCCGTGCTGCTGTGCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1336

Protein Analysis

451

Amino Acids

50.75

Weight (kDa)

8.32

Isoelectric Point (pI)

49.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29180 AT3G29180 AT3G29180 AT5G39430
fragaria_vesca	FvH4_6g47830 FvH4_6g47830 FvH4_6g47830 FvH4_6g47830
malus_domestica	MD09G1056400.v1.1 MD17G1053900.v1.1
prunus_persica	Prupe.3G262300_v2.0.a1 Prupe.3G262300_v2.0.a1 Prupe.3G262300_v2.0.a1 Prupe.3G262300_v2.0.a1 Prupe.3G262500_v2.0.a1
pyrus_communis	pycom08g18520 pycom111g04720 pycom17g05160
rosa_chinensis	RchiOBHm_Chr2g0167031
rosa_laevigata	RLG00000021690
rosa_multiflora	Rmu_sc0010966.1_g000011
rosa_roxburghii	Rroxscaffold_2G00083790
rosa_rugosa	Rorug02G0527700.1 Rorug02G0527800
rosa_samantha	Rh2AG594700 Rh2BG606000 Rh2CG576800 Rh2DG617500
rosa_wichuraiana	Rw2G049500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	176
Acc36I	ACCTGC	2 cut(s)	52, 98
Acc65I	GGTACC	1 cut(s)	751
AccB1I	GGYRCC	2 cut(s)	279, 751
AccI	GTMKAC	1 cut(s)	373
AclWI	GGATC	2 cut(s)	772, 973
AcoI	YGGCCR	1 cut(s)	427
AcsI	RAATTY	3 cut(s)	711, 998, 1237
AcuI	CTGAAG	3 cut(s)	84, 422, 945
AfaI	GTAC	5 cut(s)	109, 435, 443, 583, 753
AfiI	CCNNNNNNNGG	4 cut(s)	82, 613, 920, 962
AgsI	TTSAA	8 cut(s)	133, 252, 301, 716, 769, 881, 1021, 1225
AjiI	CACGTC	1 cut(s)	695
AjnI	CCWGG	2 cut(s)	585, 919
AluBI	AGCT	6 cut(s)	271, 323, 498, 598, 669, 1126
AluI	AGCT	6 cut(s)	271, 323, 498, 598, 669, 1126
Alw21I	GWGCWC	1 cut(s)	1349
Alw26I	GTCTC	1 cut(s)	1292
AlwI	GGATC	2 cut(s)	772, 973
AoxI	GGCC	2 cut(s)	427, 911
ApeKI	GCWGC	3 cut(s)	271, 1169, 1339
ApoI	RAATTY	3 cut(s)	711, 998, 1237
Asp700I	GAANNNNTTC	2 cut(s)	711, 1016
Asp718I	GGTACC	1 cut(s)	751
AspA2I	CCTAGG	1 cut(s)	607
AspLEI	GCGC	1 cut(s)	552
AsuHPI	GGTGA	2 cut(s)	256, 1019
AvrII	CCTAGG	1 cut(s)	607
BalI	TGGCCA	1 cut(s)	429
BanI	GGYRCC	2 cut(s)	279, 751
Bbv12I	GWGCWC	1 cut(s)	1349
BbvI	GCAGC	3 cut(s)	258, 1156, 1326
BccI	CCATC	6 cut(s)	31, 267, 377, 506, 683, 1187
BceAI	ACGGC	2 cut(s)	812, 1319
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BciT130I	CCWGG	2 cut(s)	587, 921
BcoDI	GTCTC	1 cut(s)	1292
BfaI	CTAG	2 cut(s)	608, 915
BfmI	CTRYAG	2 cut(s)	803, 1048
BfuAI	ACCTGC	2 cut(s)	52, 98
BglII	AGATCT	2 cut(s)	233, 449
BisI	GCNGC	3 cut(s)	272, 1170, 1340
BlnI	CCTAGG	1 cut(s)	607
BlsI	GCNGC	3 cut(s)	273, 1171, 1341
BmcAI	AGTACT	1 cut(s)	435
Bme1390I	CCNGG	2 cut(s)	587, 921
BmgBI	CACGTC	1 cut(s)	695
BmiI	GGNNCC	3 cut(s)	243, 281, 753
BmrFI	CCNGG	2 cut(s)	587, 921
BmsI	GCATC	5 cut(s)	139, 853, 942, 1126, 1284
BplI	GAGNNNNNCTC	2 cut(s)	335, 367
BpmI	CTGGAG	1 cut(s)	362
BpuEI	CTTGAG	2 cut(s)	406, 1142
BsaJI	CCNNGG	3 cut(s)	585, 586, 607
BsaXI	ACNNNNNCTCC	2 cut(s)	844, 874
Bsc4I	CCNNNNNNNGG	4 cut(s)	82, 613, 920, 962
Bse1I	ACTGG	3 cut(s)	126, 407, 858
Bse3DI	GCAATG	3 cut(s)	281, 1107, 1179
BseBI	CCWGG	2 cut(s)	587, 921
BseDI	CCNNGG	3 cut(s)	585, 586, 607
BseGI	GGATG	3 cut(s)	23, 361, 694
BseLI	CCNNNNNNNGG	4 cut(s)	82, 613, 920, 962
BseMI	GCAATG	3 cut(s)	281, 1107, 1179
BseMII	CTCAG	3 cut(s)	342, 966, 1224
BseNI	ACTGG	3 cut(s)	126, 407, 858
BseRI	GAGGAG	2 cut(s)	1214, 1248
BseXI	GCAGC	3 cut(s)	258, 1156, 1326
BseYI	CCCAGC	2 cut(s)	267, 1113
BsgI	GTGCAG	1 cut(s)	807
BshFI	GGCC	2 cut(s)	429, 913
BshNI	GGYRCC	2 cut(s)	279, 751
BsiHKAI	GWGCWC	1 cut(s)	1349
BsiSI	CCGG	1 cut(s)	735
BslFI	GGGAC	1 cut(s)	793
BslI	CCNNNNNNNGG	4 cut(s)	82, 613, 920, 962
BsmAI	GTCTC	1 cut(s)	1292
BsmBI	CGTCTC	1 cut(s)	1292
BsmFI	GGGAC	1 cut(s)	793
BsnI	GGCC	2 cut(s)	429, 913
Bsp1286I	GDGCHC	1 cut(s)	1349
Bsp143I	GATC	5 cut(s)	233, 449, 652, 777, 965
BspANI	GGCC	2 cut(s)	429, 913
BspCNI	CTCAG	3 cut(s)	341, 967, 1225
BspLI	GGNNCC	3 cut(s)	243, 281, 753
BspMAI	CTGCAG	1 cut(s)	807
BspMI	ACCTGC	2 cut(s)	52, 98
BspPI	GGATC	2 cut(s)	772, 973
BspT107I	GGYRCC	2 cut(s)	279, 751
BsrDI	GCAATG	3 cut(s)	281, 1107, 1179
BsrI	ACTGG	3 cut(s)	126, 407, 858
BssECI	CCNNGG	3 cut(s)	585, 586, 607
BssMI	GATC	5 cut(s)	233, 449, 652, 777, 965
BssNAI	GTATAC	1 cut(s)	374
BssT1I	CCWWGG	1 cut(s)	607
Bst1107I	GTATAC	1 cut(s)	374
Bst2UI	CCWGG	2 cut(s)	587, 921
Bst4CI	ACNGT	3 cut(s)	56, 287, 1052
BstC8I	GCNNGC	2 cut(s)	400, 457
BstDEI	CTNAG	5 cut(s)	237, 328, 782, 975, 1233
BstENI	CCTNNNNNAGG	2 cut(s)	611, 918
BstF5I	GGATG	3 cut(s)	23, 361, 694
BstHHI	GCGC	1 cut(s)	552
BstKTI	GATC	5 cut(s)	236, 452, 655, 780, 968
BstMAI	GTCTC	1 cut(s)	1292
BstMBI	GATC	5 cut(s)	233, 449, 652, 777, 965
BstMWI	GCNNNNNNNGC	3 cut(s)	277, 863, 1123
BstNI	CCWGG	2 cut(s)	587, 921
BstNSI	RCATGY	1 cut(s)	16
BstSCI	CCNGG	2 cut(s)	585, 919
BstSFI	CTRYAG	2 cut(s)	803, 1048
BstV1I	GCAGC	3 cut(s)	258, 1156, 1326
BstX2I	RGATCY	4 cut(s)	233, 449, 777, 965
BstYI	RGATCY	4 cut(s)	233, 449, 777, 965
BstZ17I	GTATAC	1 cut(s)	374
BsuRI	GGCC	2 cut(s)	429, 913
BtgZI	GCGATG	1 cut(s)	162
BtrI	CACGTC	1 cut(s)	695
BtsCI	GGATG	3 cut(s)	23, 361, 694
BtsIMutI	CAGTG	4 cut(s)	52, 187, 336, 865
BveI	ACCTGC	2 cut(s)	52, 98
Cac8I	GCNNGC	2 cut(s)	400, 457
CfoI	GCGC	1 cut(s)	552
Csp6I	GTAC	5 cut(s)	108, 434, 442, 582, 752
CviAII	CATG	3 cut(s)	13, 163, 377
CviQI	GTAC	5 cut(s)	108, 434, 442, 582, 752
DdeI	CTNAG	5 cut(s)	237, 328, 782, 975, 1233
DpnI	GATC	5 cut(s)	235, 451, 654, 779, 967
DpnII	GATC	5 cut(s)	233, 449, 652, 777, 965
DraI	TTTAAA	3 cut(s)	673, 847, 997
DrdI	GACNNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	176
EaeI	YGGCCR	1 cut(s)	427
Eco130I	CCWWGG	1 cut(s)	607
Eco57I	CTGAAG	3 cut(s)	84, 422, 945
EcoNI	CCTNNNNNAGG	2 cut(s)	611, 918
EcoRII	CCWGG	2 cut(s)	585, 919
EcoT14I	CCWWGG	1 cut(s)	607
ErhI	CCWWGG	1 cut(s)	607
Esp3I	CGTCTC	1 cut(s)	1292
FaeI	CATG	3 cut(s)	16, 166, 380
FaqI	GGGAC	1 cut(s)	793
FatI	CATG	3 cut(s)	12, 162, 376
FblI	GTMKAC	1 cut(s)	373
Fnu4HI	GCNGC	3 cut(s)	272, 1170, 1340
FokI	GGATG	3 cut(s)	10, 368, 701
Fsp4HI	GCNGC	3 cut(s)	272, 1170, 1340
FspBI	CTAG	2 cut(s)	608, 915
GlaI	GCGC	1 cut(s)	551
GluI	GCNGC	3 cut(s)	272, 1170, 1340
GsaI	CCCAGC	2 cut(s)	271, 1117
GsuI	CTGGAG	1 cut(s)	362
HaeIII	GGCC	2 cut(s)	429, 913
HapII	CCGG	1 cut(s)	735
HhaI	GCGC	1 cut(s)	552
Hin1II	CATG	3 cut(s)	16, 166, 380
Hin6I	GCGC	1 cut(s)	550
HinP1I	GCGC	1 cut(s)	550
HincII	GTYRAC	3 cut(s)	18, 1035, 1291
HindII	GTYRAC	3 cut(s)	18, 1035, 1291
HindIII	AAGCTT	1 cut(s)	667
HinfI	GANTC	8 cut(s)	326, 344, 350, 557, 698, 979, 1207, 1317
HpaII	CCGG	1 cut(s)	735
HphI	GGTGA	2 cut(s)	256, 1019
Hpy166II	GTNNAC	5 cut(s)	18, 199, 374, 1035, 1291
Hpy188I	TCNGA	8 cut(s)	103, 349, 355, 526, 836, 976, 1044, 1234
Hpy188III	TCNNGA	7 cut(s)	133, 341, 716, 963, 1121, 1184, 1279
Hpy8I	GTNNAC	5 cut(s)	18, 199, 374, 1035, 1291
HpyAV	CCTTC	1 cut(s)	607
HpyCH4III	ACNGT	3 cut(s)	56, 287, 1052
HpyCH4IV	ACGT	1 cut(s)	694
HpyF10VI	GCNNNNNNNGC	3 cut(s)	277, 863, 1123
HpyF3I	CTNAG	5 cut(s)	237, 328, 782, 975, 1233
HpySE526I	ACGT	1 cut(s)	694
Hsp92II	CATG	3 cut(s)	16, 166, 380
HspAI	GCGC	1 cut(s)	550
KpnI	GGTACC	1 cut(s)	755
Kzo9I	GATC	5 cut(s)	233, 449, 652, 777, 965
LmnI	GCTCC	1 cut(s)	1045
Lsp1109I	GCAGC	3 cut(s)	258, 1156, 1326
LweI	GCATC	5 cut(s)	139, 853, 942, 1126, 1284
MaeI	CTAG	2 cut(s)	608, 915
MaeII	ACGT	1 cut(s)	694
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	5 cut(s)	235, 451, 654, 779, 967
MboI	GATC	5 cut(s)	233, 449, 652, 777, 965
MboII	GAAGA	5 cut(s)	243, 497, 652, 881, 1172
MfeI	CAATTG	1 cut(s)	746
MflI	RGATCY	4 cut(s)	233, 449, 777, 965
MhlI	GDGCHC	1 cut(s)	1349
MlsI	TGGCCA	1 cut(s)	429
MluNI	TGGCCA	1 cut(s)	429
MlyI	GAGTC	4 cut(s)	320, 344, 353, 1216
MnlI	CCTC	7 cut(s)	310, 509, 630, 679, 997, 1192, 1269
Mox20I	TGGCCA	1 cut(s)	429
MroXI	GAANNNNTTC	2 cut(s)	711, 1016
MscI	TGGCCA	1 cut(s)	429
MseI	TTAA	6 cut(s)	36, 672, 846, 996, 1311, 1351
MslI	CAYNNNNRTG	2 cut(s)	381, 660
Msp20I	TGGCCA	1 cut(s)	429
MspA1I	CMGCKG	1 cut(s)	271
MspI	CCGG	1 cut(s)	735
MspR9I	CCNGG	2 cut(s)	587, 921
MunI	CAATTG	1 cut(s)	746
MvaI	CCWGG	2 cut(s)	587, 921
MwoI	GCNNNNNNNGC	3 cut(s)	277, 863, 1123
NdeII	GATC	5 cut(s)	233, 449, 652, 777, 965
NlaIII	CATG	3 cut(s)	16, 166, 380
NlaIV	GGNNCC	3 cut(s)	243, 281, 753
NmuCI	GTSAC	1 cut(s)	167
NspI	RCATGY	1 cut(s)	16
PasI	CCCWGGG	1 cut(s)	586
PcsI	WCGNNNNNNNCGW	1 cut(s)	1332
PdmI	GAANNNNTTC	2 cut(s)	711, 1016
PfeI	GAWTC	4 cut(s)	557, 698, 979, 1317
PkrI	GCNGC	3 cut(s)	273, 1171, 1341
PleI	GAGTC	4 cut(s)	320, 344, 352, 1215
PpsI	GAGTC	4 cut(s)	320, 344, 352, 1215
Psp6I	CCWGG	2 cut(s)	585, 919
PspFI	CCCAGC	2 cut(s)	267, 1113
PspGI	CCWGG	2 cut(s)	585, 919
PspN4I	GGNNCC	3 cut(s)	243, 281, 753
PstI	CTGCAG	1 cut(s)	807
PsuI	RGATCY	4 cut(s)	233, 449, 777, 965
PvuII	CAGCTG	1 cut(s)	271
RsaI	GTAC	5 cut(s)	109, 435, 443, 583, 753
RsaNI	GTAC	5 cut(s)	108, 434, 442, 582, 752
RseI	CAYNNNNRTG	2 cut(s)	381, 660
SaqAI	TTAA	6 cut(s)	36, 672, 846, 996, 1311, 1351
SatI	GCNGC	3 cut(s)	272, 1170, 1340
Sau3AI	GATC	5 cut(s)	233, 449, 652, 777, 965
ScaI	AGTACT	1 cut(s)	435
SchI	GAGTC	4 cut(s)	320, 344, 353, 1216
ScrFI	CCNGG	2 cut(s)	587, 921
SduI	GDGCHC	1 cut(s)	1349
SfaNI	GCATC	5 cut(s)	139, 853, 942, 1126, 1284
SfcI	CTRYAG	2 cut(s)	803, 1048
SmiMI	CAYNNNNRTG	2 cut(s)	381, 660
SmlI	CTYRAG	2 cut(s)	421, 1121
SmoI	CTYRAG	2 cut(s)	421, 1121
SspMI	CTAG	2 cut(s)	608, 915
StyD4I	CCNGG	2 cut(s)	585, 919
StyI	CCWWGG	1 cut(s)	607
TaaI	ACNGT	3 cut(s)	56, 287, 1052
TaiI	ACGT	1 cut(s)	697
TatI	WGTACW	1 cut(s)	433
TfiI	GAWTC	4 cut(s)	557, 698, 979, 1317
Tru1I	TTAA	6 cut(s)	36, 672, 846, 996, 1311, 1351
Tru9I	TTAA	6 cut(s)	36, 672, 846, 996, 1311, 1351
TscAI	CASTG	4 cut(s)	59, 187, 336, 865
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	3 cut(s)	271, 1169, 1339
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	4 cut(s)	498, 518, 636, 720
TspGWI	ACGGA	3 cut(s)	58, 1316, 1341
TspRI	CASTG	4 cut(s)	59, 187, 336, 865
XagI	CCTNNNNNAGG	2 cut(s)	611, 918
XapI	RAATTY	3 cut(s)	711, 998, 1237
XceI	RCATGY	1 cut(s)	16
XmaJI	CCTAGG	1 cut(s)	607
XmiI	GTMKAC	1 cut(s)	373
XmnI	GAANNNNTTC	2 cut(s)	711, 1016
XspI	CTAG	2 cut(s)	608, 915
ZrmI	AGTACT	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.