pycom08g18520

Protein of unknown function (DUF1336)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
18656510 .. 18656934
425 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g18520.1

Sequence Viewer

Length: 384 bp
ATGGAGGTATTGGCCATCGGCCTAAGGATTTTGTTTAGTTTATTTTTTAATTTTCTTCCCTGTTCTACAGATTGTTTTCCATTAGCAGGCAATCCATTTAGGAATATCTCTGGTGGCCAAGTAGTTCAGTTCGAAAGATCCGCACGCCTCGTGGGTAATGGGTGTCATTCAGATACGTTCATGGGGAAGGATGACGAACTTCTAGCAATGAGGAAGAATATTCTGGATCATTTTTCTGGAAGCTTTAAGGGACTTAGAGAGGATCGACAGAATTTTATGAAAAGATTCAAGACAACATGCTTAAATCTAGCTTGCCTCGATTTTTTGATTTTTCCGGTTTTTCTTTGCTCTAATGAGAATACTATTTCTGTTTATCAGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

128

Amino Acids

14.38

Weight (kDa)

7.6

Isoelectric Point (pI)

35.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 141
AclWI GGATC 3 cut(s) 132, 234, 270
AcoI YGGCCR 2 cut(s) 12, 115
AcsI RAATTY 1 cut(s) 271
AfiI CCNNNNNNNGG 1 cut(s) 86
AgsI TTSAA 1 cut(s) 289
AluBI AGCT 2 cut(s) 243, 311
AluI AGCT 2 cut(s) 243, 311
AlwI GGATC 3 cut(s) 132, 234, 270
AoxI GGCC 3 cut(s) 12, 19, 115
ApoI RAATTY 1 cut(s) 271
Asp700I GAANNNNTTC 1 cut(s) 284
AsuII TTCGAA 1 cut(s) 132
AxyI CCTNAGG 1 cut(s) 23
BalI TGGCCA 2 cut(s) 14, 117
BauI CACGAG 1 cut(s) 149
BccI CCATC 1 cut(s) 23
BfaI CTAG 2 cut(s) 203, 308
BfmI CTRYAG 1 cut(s) 66
Bpu14I TTCGAA 1 cut(s) 132
BsaWI WCCGGW 1 cut(s) 334
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse21I CCTNAGG 1 cut(s) 23
Bse3DI GCAATG 1 cut(s) 213
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 86
BseMI GCAATG 1 cut(s) 213
BshFI GGCC 3 cut(s) 14, 21, 117
BsiSI CCGG 1 cut(s) 335
BslFI GGGAC 1 cut(s) 264
BslI CCNNNNNNNGG 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 264
BsnI GGCC 3 cut(s) 14, 21, 117
Bsp119I TTCGAA 1 cut(s) 132
Bsp143I GATC 3 cut(s) 137, 226, 262
BspACI CCGC 1 cut(s) 141
BspANI GGCC 3 cut(s) 14, 21, 117
BspPI GGATC 3 cut(s) 132, 234, 270
BspT104I TTCGAA 1 cut(s) 132
BsrDI GCAATG 1 cut(s) 213
BssMI GATC 3 cut(s) 137, 226, 262
BssSI CACGAG 1 cut(s) 149
Bst2BI CACGAG 1 cut(s) 149
BstBI TTCGAA 1 cut(s) 132
BstC8I GCNNGC 3 cut(s) 88, 145, 313
BstDEI CTNAG 2 cut(s) 23, 254
BstF5I GGATG 1 cut(s) 196
BstKTI GATC 3 cut(s) 140, 229, 265
BstMBI GATC 3 cut(s) 137, 226, 262
BstNSI RCATGY 1 cut(s) 300
BstSFI CTRYAG 1 cut(s) 66
BstX2I RGATCY 1 cut(s) 137
BstYI RGATCY 1 cut(s) 137
Bsu36I CCTNAGG 1 cut(s) 23
BsuRI GGCC 3 cut(s) 14, 21, 117
BtsCI GGATG 1 cut(s) 196
Cac8I GCNNGC 3 cut(s) 88, 145, 313
CviAII CATG 2 cut(s) 181, 297
CviJI RGCY 5 cut(s) 14, 21, 117, 243, 311
CviKI_1 RGCY 5 cut(s) 14, 21, 117, 243, 311
DdeI CTNAG 2 cut(s) 23, 254
DpnI GATC 3 cut(s) 139, 228, 264
DpnII GATC 3 cut(s) 137, 226, 262
EaeI YGGCCR 2 cut(s) 12, 115
Eco81I CCTNAGG 1 cut(s) 23
FaeI CATG 2 cut(s) 184, 300
FaiI YATR 3 cut(s) 182, 278, 298
FaqI GGGAC 1 cut(s) 264
FatI CATG 2 cut(s) 180, 296
FokI GGATG 1 cut(s) 203
FspBI CTAG 2 cut(s) 203, 308
HaeIII GGCC 3 cut(s) 14, 21, 117
HapII CCGG 1 cut(s) 335
Hin1II CATG 2 cut(s) 184, 300
HindIII AAGCTT 1 cut(s) 241
HinfI GANTC 1 cut(s) 285
HpaII CCGG 1 cut(s) 335
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 3 cut(s) 224, 237, 289
HpyAV CCTTC 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 176
HpyF3I CTNAG 2 cut(s) 23, 254
HpySE526I ACGT 1 cut(s) 176
Hsp92II CATG 2 cut(s) 184, 300
Kzo9I GATC 3 cut(s) 137, 226, 262
LpnPI CCDG 7 cut(s) 72, 73, 96, 209, 222, 348, 362
MaeI CTAG 2 cut(s) 203, 308
MaeII ACGT 1 cut(s) 176
MalI GATC 3 cut(s) 139, 228, 264
MboI GATC 3 cut(s) 137, 226, 262
MboII GAAGA 2 cut(s) 47, 226
MflI RGATCY 1 cut(s) 137
MlsI TGGCCA 2 cut(s) 14, 117
MluCI AATT 2 cut(s) 49, 271
MluNI TGGCCA 2 cut(s) 14, 117
MnlI CCTC 4 cut(s) 158, 204, 253, 326
Mox20I TGGCCA 2 cut(s) 14, 117
MroXI GAANNNNTTC 1 cut(s) 284
MscI TGGCCA 2 cut(s) 14, 117
MseI TTAA 3 cut(s) 48, 246, 302
Msp20I TGGCCA 2 cut(s) 14, 117
MspI CCGG 1 cut(s) 335
NdeII GATC 3 cut(s) 137, 226, 262
NlaIII CATG 2 cut(s) 184, 300
NspI RCATGY 1 cut(s) 300
NspV TTCGAA 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 1 cut(s) 285
PsuI RGATCY 1 cut(s) 137
SaqAI TTAA 3 cut(s) 48, 246, 302
Sau3AI GATC 3 cut(s) 137, 226, 262
SetI ASST 4 cut(s) 9, 179, 245, 313
SfcI CTRYAG 1 cut(s) 66
SfuI TTCGAA 1 cut(s) 132
Sse9I AATT 2 cut(s) 49, 271
SsiI CCGC 1 cut(s) 141
SspI AATATT 1 cut(s) 220
SspMI CTAG 2 cut(s) 203, 308
TaiI ACGT 1 cut(s) 179
TaqI TCGA 3 cut(s) 132, 265, 318
TasI AATT 2 cut(s) 49, 271
TfiI GAWTC 1 cut(s) 285
Tru1I TTAA 3 cut(s) 48, 246, 302
Tru9I TTAA 3 cut(s) 48, 246, 302
TspDTI ATGAA 2 cut(s) 169, 293
XapI RAATTY 1 cut(s) 271
XceI RCATGY 1 cut(s) 300
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 2 cut(s) 203, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.