Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0005242

Physical Location & Seq

Genomic Coordinates Forward (+)

2864687 .. 2865918

Gene Structure 1232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g04720.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGGTGGTTGTGTGTCAACCCCGTCCAGAACAATTAAATCACGGAAGAAACACCGTCAGAGGGTCAACAAACGCCATGGAAAGATAACCTGCTCTGCTTCTGATGGTACCAAGAAGAGAAACAGCGATGCAGGAGCTCGCGTAACTGATTATTCTGTGAGTGAGTTTGTTCTTGCGGACTTTGAGAATGGTGCAACAACTACTCACAGAAGATCTAAGGTTTCTAATTCTACGTTCCAACTCACCCAGATGCAGTGGCACCGCCAATATGATTCGAATGTAATTTGCCAAGAAGAAACTTGGTTCGACTCAGTGAGTATTCTGGAATCTGACTCGGACGATGAATTTATTAGTATACACGGAGATGGTTTTCCATTAGCAGGCAATCCCATTGGGAATATCTCAGGTGGCCAAGTAGTTCAGTTCGAAAGATCTGCACGCTTTGTAGATAACGGGTGTAAGTATGAAGAATACCAAAGCTATACAAAAATAGATGGAGGTAAATCGGATAAGTTCATGGGGAAGGATGACGAAGTTCGTAGCAAGAGGAAGAATATTCTGGATCATTCTTATGGAAGCTTTAAAGGACTTAGGGAGGATCGACGTGATTCTAATGAAAAGATTCAAGGCAATATGCTTAAATCTGGCTTGCCTCGAATGATACCTTCTGTAAGTTTCAACGATAAGATATTAAGTGCGCAGAGTTTGGCTCCACAGGCCCAAAGAAAGCCATCAGCAGTTTTCAGGCTTTCTTTTAAGAGGATCGATCGTGTGATGCGGACGAAACCATTGAACAATGTCAATCAAAAAGGTTTCTGTATTGTCCTAGACCAGGATGTATCATTCCATGTTGTAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1336

Protein Analysis

287

Amino Acids

32.32

Weight (kDa)

9.56

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29180 AT3G29180 AT3G29180 AT5G39430
fragaria_vesca	FvH4_6g47830 FvH4_6g47830 FvH4_6g47830 FvH4_6g47830
malus_domestica	MD09G1056400.v1.1 MD17G1053900.v1.1
prunus_persica	Prupe.3G262300_v2.0.a1 Prupe.3G262300_v2.0.a1 Prupe.3G262300_v2.0.a1 Prupe.3G262300_v2.0.a1 Prupe.3G262500_v2.0.a1
pyrus_communis	pycom08g18520 pycom111g04720 pycom17g05160
rosa_chinensis	RchiOBHm_Chr2g0167031
rosa_laevigata	RLG00000021690
rosa_multiflora	Rmu_sc0010966.1_g000011
rosa_roxburghii	Rroxscaffold_2G00083790
rosa_rugosa	Rorug02G0527700.1 Rorug02G0527800
rosa_samantha	Rh2AG594700 Rh2BG606000 Rh2CG576800 Rh2DG617500
rosa_wichuraiana	Rw2G049500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	699
Acc36I	ACCTGC	1 cut(s)	98
Acc65I	GGTACC	1 cut(s)	107
AccB1I	GGYRCC	2 cut(s)	107, 258
AccI	GTMKAC	1 cut(s)	355
AccII	CGCG	1 cut(s)	141
AciI	CCGC	3 cut(s)	176, 262, 778
AclWI	GGATC	3 cut(s)	570, 606, 770
AcoI	YGGCCR	1 cut(s)	409
AcsI	RAATTY	1 cut(s)	344
AfaI	GTAC	1 cut(s)	109
AfiI	CCNNNNNNNGG	3 cut(s)	61, 380, 832
AgsI	TTSAA	3 cut(s)	626, 679, 793
AjiI	CACGTC	1 cut(s)	605
AjnI	CCWGG	1 cut(s)	831
AluBI	AGCT	3 cut(s)	137, 480, 579
AluI	AGCT	3 cut(s)	137, 480, 579
Alw21I	GWGCWC	1 cut(s)	139
AlwI	GGATC	3 cut(s)	570, 606, 770
AoxI	GGCC	2 cut(s)	409, 717
ApoI	RAATTY	1 cut(s)	344
Asp700I	GAANNNNTTC	1 cut(s)	621
Asp718I	GGTACC	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	700
AspS9I	GGNCC	1 cut(s)	718
AsuHPI	GGTGA	1 cut(s)	235
AsuII	TTCGAA	2 cut(s)	275, 426
BalI	TGGCCA	1 cut(s)	411
BanI	GGYRCC	2 cut(s)	107, 258
BanII	GRGCYC	1 cut(s)	139
Bbv12I	GWGCWC	1 cut(s)	139
BccI	CCATC	4 cut(s)	98, 359, 488, 739
BcgI	CGANNNNNNTGC	2 cut(s)	416, 450
BciT130I	CCWGG	1 cut(s)	833
BfaI	CTAG	1 cut(s)	827
BfuAI	ACCTGC	1 cut(s)	98
BglII	AGATCT	2 cut(s)	212, 431
Bme1390I	CCNGG	1 cut(s)	833
BmgBI	CACGTC	1 cut(s)	605
BmgT120I	GGNCC	1 cut(s)	718
BmiI	GGNNCC	3 cut(s)	109, 260, 711
BmrFI	CCNGG	1 cut(s)	833
BmsI	GCATC	3 cut(s)	118, 240, 765
BplI	GAGNNNNNCTC	2 cut(s)	694, 726
Bpu14I	TTCGAA	2 cut(s)	275, 426
Bsa29I	ATCGAT	1 cut(s)	765
BsaJI	CCNNGG	1 cut(s)	76
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 380, 832
BseBI	CCWGG	1 cut(s)	833
BseCI	ATCGAT	1 cut(s)	765
BseDI	CCNNGG	1 cut(s)	76
BseGI	GGATG	2 cut(s)	532, 841
BseLI	CCNNNNNNNGG	3 cut(s)	61, 380, 832
BseMII	CTCAG	2 cut(s)	324, 417
BsgI	GTGCAG	1 cut(s)	420
Bsh1236I	CGCG	1 cut(s)	141
Bsh1285I	CGRYCG	1 cut(s)	769
BshFI	GGCC	2 cut(s)	411, 719
BshNI	GGYRCC	2 cut(s)	107, 258
BshVI	ATCGAT	1 cut(s)	765
BsiEI	CGRYCG	1 cut(s)	769
BsiHKAI	GWGCWC	1 cut(s)	139
BslI	CCNNNNNNNGG	3 cut(s)	61, 380, 832
BsnI	GGCC	2 cut(s)	411, 719
Bsp119I	TTCGAA	2 cut(s)	275, 426
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	6 cut(s)	212, 431, 562, 598, 762, 766
Bsp19I	CCATGG	1 cut(s)	76
BspACI	CCGC	3 cut(s)	176, 262, 778
BspANI	GGCC	2 cut(s)	411, 719
BspCNI	CTCAG	2 cut(s)	323, 416
BspDI	ATCGAT	1 cut(s)	765
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	3 cut(s)	109, 260, 711
BspMI	ACCTGC	1 cut(s)	98
BspPI	GGATC	3 cut(s)	570, 606, 770
BspT104I	TTCGAA	2 cut(s)	275, 426
BspT107I	GGYRCC	2 cut(s)	107, 258
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	6 cut(s)	212, 431, 562, 598, 762, 766
BssNAI	GTATAC	1 cut(s)	356
BssT1I	CCWWGG	1 cut(s)	76
Bst1107I	GTATAC	1 cut(s)	356
Bst2UI	CCWGG	1 cut(s)	833
Bst4CI	ACNGT	1 cut(s)	56
Bst6I	CTCTTC	1 cut(s)	110
BstBI	TTCGAA	2 cut(s)	275, 426
BstC8I	GCNNGC	4 cut(s)	139, 382, 439, 650
BstDEI	CTNAG	4 cut(s)	216, 310, 403, 590
BstDSI	CCRYGG	1 cut(s)	76
BstENI	CCTNNNNNAGG	1 cut(s)	830
BstF5I	GGATG	2 cut(s)	532, 841
BstFNI	CGCG	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	700
BstKTI	GATC	6 cut(s)	215, 434, 565, 601, 765, 769
BstMBI	GATC	6 cut(s)	212, 431, 562, 598, 762, 766
BstMCI	CGRYCG	1 cut(s)	769
BstMWI	GCNNNNNNNGC	1 cut(s)	716
BstNI	CCWGG	1 cut(s)	833
BstSCI	CCNGG	1 cut(s)	831
BstUI	CGCG	1 cut(s)	141
BstX2I	RGATCY	2 cut(s)	212, 431
BstYI	RGATCY	2 cut(s)	212, 431
BstZ17I	GTATAC	1 cut(s)	356
Bsu15I	ATCGAT	1 cut(s)	765
BsuRI	GGCC	2 cut(s)	411, 719
BsuTUI	ATCGAT	1 cut(s)	765
BtgI	CCRYGG	1 cut(s)	76
BtgZI	GCGATG	1 cut(s)	141
BtrI	CACGTC	1 cut(s)	605
BtsCI	GGATG	2 cut(s)	532, 841
BtsI	GCAGTG	1 cut(s)	260
BtsIMutI	CAGTG	2 cut(s)	260, 318
BveI	ACCTGC	1 cut(s)	98
Cac8I	GCNNGC	4 cut(s)	139, 382, 439, 650
CfoI	GCGC	1 cut(s)	700
Cfr13I	GGNCC	1 cut(s)	718
ClaI	ATCGAT	1 cut(s)	765
Csp6I	GTAC	1 cut(s)	108
CviAII	CATG	3 cut(s)	77, 517, 848
CviJI	RGCY	9 cut(s)	137, 411, 480, 579, 648, 710, 719, 730, 748
CviKI_1	RGCY	9 cut(s)	137, 411, 480, 579, 648, 710, 719, 730, 748
CviQI	GTAC	1 cut(s)	108
DdeI	CTNAG	4 cut(s)	216, 310, 403, 590
DpnI	GATC	6 cut(s)	214, 433, 564, 600, 764, 768
DpnII	GATC	6 cut(s)	212, 431, 562, 598, 762, 766
DraI	TTTAAA	1 cut(s)	583
EaeI	YGGCCR	1 cut(s)	409
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Ecl136II	GAGCTC	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	139
Eco53kI	GAGCTC	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	830
EcoRII	CCWGG	1 cut(s)	831
EcoT14I	CCWWGG	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	3 cut(s)	80, 520, 851
FaiI	YATR	9 cut(s)	78, 270, 356, 465, 483, 518, 573, 635, 849
FatI	CATG	3 cut(s)	76, 516, 847
FblI	GTMKAC	1 cut(s)	355
FokI	GGATG	2 cut(s)	539, 848
FriOI	GRGCYC	1 cut(s)	139
FspBI	CTAG	1 cut(s)	827
FspI	TGCGCA	1 cut(s)	699
GlaI	GCGC	1 cut(s)	699
HaeIII	GGCC	2 cut(s)	411, 719
HhaI	GCGC	1 cut(s)	700
Hin1II	CATG	3 cut(s)	80, 520, 851
Hin6I	GCGC	1 cut(s)	698
HinP1I	GCGC	1 cut(s)	698
HincII	GTYRAC	2 cut(s)	18, 67
HindII	GTYRAC	2 cut(s)	18, 67
HindIII	AAGCTT	1 cut(s)	577
HinfI	GANTC	6 cut(s)	272, 308, 326, 332, 608, 622
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	3 cut(s)	18, 67, 356
Hpy188I	TCNGA	5 cut(s)	60, 103, 331, 337, 508
Hpy188III	TCNNGA	3 cut(s)	27, 323, 560
Hpy8I	GTNNAC	3 cut(s)	18, 67, 356
Hpy99I	CGWCG	1 cut(s)	606
HpyAV	CCTTC	2 cut(s)	517, 675
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4IV	ACGT	2 cut(s)	233, 604
HpyCH4V	TGCA	4 cut(s)	131, 194, 253, 437
HpyF10VI	GCNNNNNNNGC	1 cut(s)	716
HpyF3I	CTNAG	4 cut(s)	216, 310, 403, 590
HpySE526I	ACGT	2 cut(s)	233, 604
Hsp92II	CATG	3 cut(s)	80, 520, 851
HspAI	GCGC	1 cut(s)	698
KpnI	GGTACC	1 cut(s)	111
Kzo9I	GATC	6 cut(s)	212, 431, 562, 598, 762, 766
LmnI	GCTCC	2 cut(s)	134, 715
LweI	GCATC	3 cut(s)	118, 240, 765
MaeI	CTAG	1 cut(s)	827
MaeII	ACGT	2 cut(s)	233, 604
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	6 cut(s)	214, 433, 564, 600, 764, 768
MboI	GATC	6 cut(s)	212, 431, 562, 598, 762, 766
MboII	GAAGA	6 cut(s)	58, 127, 222, 305, 479, 562
MflI	RGATCY	2 cut(s)	212, 431
MhlI	GDGCHC	1 cut(s)	139
MlsI	TGGCCA	1 cut(s)	411
MluCI	AATT	4 cut(s)	33, 226, 282, 344
MluNI	TGGCCA	1 cut(s)	411
MlyI	GAGTC	2 cut(s)	302, 326
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	6 cut(s)	54, 491, 540, 589, 663, 753
Mox20I	TGGCCA	1 cut(s)	411
MroXI	GAANNNNTTC	1 cut(s)	621
MscI	TGGCCA	1 cut(s)	411
MseI	TTAA	5 cut(s)	36, 582, 639, 692, 756
MslI	CAYNNNNRTG	3 cut(s)	248, 363, 570
Msp20I	TGGCCA	1 cut(s)	411
MspR9I	CCNGG	1 cut(s)	833
MvaI	CCWGG	1 cut(s)	833
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	716
NcoI	CCATGG	1 cut(s)	76
NdeII	GATC	6 cut(s)	212, 431, 562, 598, 762, 766
NlaIII	CATG	3 cut(s)	80, 520, 851
NlaIV	GGNNCC	3 cut(s)	109, 260, 711
NsbI	TGCGCA	1 cut(s)	699
NspV	TTCGAA	2 cut(s)	275, 426
PdmI	GAANNNNTTC	1 cut(s)	621
PfeI	GAWTC	4 cut(s)	272, 326, 608, 622
Ple19I	CGATCG	1 cut(s)	769
PleI	GAGTC	2 cut(s)	302, 326
PpsI	GAGTC	2 cut(s)	302, 326
Psp124BI	GAGCTC	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	831
PspGI	CCWGG	1 cut(s)	831
PspN4I	GGNNCC	3 cut(s)	109, 260, 711
PspPI	GGNCC	1 cut(s)	718
PsuI	RGATCY	2 cut(s)	212, 431
PvuI	CGATCG	1 cut(s)	769
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
RseI	CAYNNNNRTG	3 cut(s)	248, 363, 570
SacI	GAGCTC	1 cut(s)	139
SaqAI	TTAA	5 cut(s)	36, 582, 639, 692, 756
Sau3AI	GATC	6 cut(s)	212, 431, 562, 598, 762, 766
Sau96I	GGNCC	1 cut(s)	718
SchI	GAGTC	2 cut(s)	302, 326
ScrFI	CCNGG	1 cut(s)	833
SduI	GDGCHC	1 cut(s)	139
SfaNI	GCATC	3 cut(s)	118, 240, 765
SfuI	TTCGAA	2 cut(s)	275, 426
SmiMI	CAYNNNNRTG	3 cut(s)	248, 363, 570
Sse9I	AATT	4 cut(s)	33, 226, 282, 344
SsiI	CCGC	3 cut(s)	176, 262, 778
SspI	AATATT	1 cut(s)	556
SspMI	CTAG	1 cut(s)	827
SstI	GAGCTC	1 cut(s)	139
StyD4I	CCNGG	1 cut(s)	831
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	56
TaiI	ACGT	2 cut(s)	236, 607
TaqI	TCGA	6 cut(s)	275, 306, 426, 601, 655, 765
TasI	AATT	4 cut(s)	33, 226, 282, 344
TfiI	GAWTC	4 cut(s)	272, 326, 608, 622
Tru1I	TTAA	5 cut(s)	36, 582, 639, 692, 756
Tru9I	TTAA	5 cut(s)	36, 582, 639, 692, 756
TscAI	CASTG	2 cut(s)	260, 318
TspDTI	ATGAA	4 cut(s)	357, 480, 505, 630
TspGWI	ACGGA	2 cut(s)	58, 375
TspRI	CASTG	2 cut(s)	260, 318
XagI	CCTNNNNNAGG	1 cut(s)	830
XapI	RAATTY	1 cut(s)	344
XmiI	GTMKAC	1 cut(s)	355
XmnI	GAANNNNTTC	1 cut(s)	621
XspI	CTAG	1 cut(s)	827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.