Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010447

Physical Location & Seq

Genomic Coordinates Reverse (-)

25811914 .. 25820104

Gene Structure 8191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G285100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGATCTTGCCAGGCTACTTTGTGCACTTGGGCTTTTAGTTTTGGTTCTGCCTGAGCAGCTGAAGGCAGTGAATGCTGGGGCTGTTGGCGGTTCTAGGAGTTGTGGGTTTCCAGCAATATATAACTTTGGAGACTCAAACTCTGATACAGGGGCAATCTCAGCAGCCATATCTGAGGTTCCTCCTCCAAATGGTGAAAGCTTCTTCGGACATCCTTCTGGCCGCTTTTCTGATGGTCGTCTTATTATAGATTTTATAGCTGAGAAATTGCAGTTACCATACCTCAGTCCATACCTGGACTCACTTGGGACCAATTTTAGGCATGGTGCAAATTTTGCAACTGGTGGTTCATCTATTAGGCCGGGCGGCTACAGCCCATTTCATCTTGGCATTCAACTTTCCCAGTTCATAAGATTCAAGTCTCAGAGCTTTGCTCTCTATAAACAACTTAGTTCAAACAGAAGACTTCCTAGGCCTGAGGACTTCTCGAAAGCTCTGTACACATTTGATATTGGTCAGAATGATCTTGCCTACGGTCTTCAACACGGGACGGTAGAAGAAGTTAGAGCCTCCATTCCTGCAATCCTGAGCCACTTGTCCCAAGCAATCTCTCAACTATACAAGGAAGGAGCAAGGTTTTTTTGGGTGCATGACACAGGCCCACATGGGTGCTTGCCCTATAGTGTCATCTATGATCAATCAAAGCCTGTCAATCTGGACCAGAGTGGCTGTGTGAAGCCTCTGAATGAGGTGGCTCAGGAGTTCAATCGGCAACTTAAGGACAGCGTATCACGGTTAAGATCAGAGCTCCCTCTTGCAGTATTTACATACGTCGATGTGTATTCAGCTAAATATGCACTGATTAGCAATGCAAAAAGTCAAGGTTTTGTTGATCCATTTGACTTCTGCTGTGGCAGTTACTATGGCTACCATGTTGACTGTGGAAAGAAAGCCATAGTGAATGGAACCGTCTATGGTAATCCTTGTAAAAATCCATCAAGACATATTAGTTGGGATGGCATACACTACTCCCAGGCAGCAAACCTGTTGATTGCTGAGCGCATTCTCAATGGCTCATTCTCCAACCCCCCTGTTTCAGTCACAGAGCAACAACAAGGACAAACGCCGACCTCAGACCAGTCGTTTGGACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

385

Amino Acids

41.91

Weight (kDa)

6.79

Isoelectric Point (pI)

42.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27950
fragaria_vesca	FvH4_6g50740 FvH4_6g50740 FvH4_6g50740 FvH4_6g50740 FvH4_6g50740 FvH4_6g50740
malus_domestica	MD09G1033000.v1.1
prunus_persica	Prupe.3G285100_v2.0.a1 Prupe.3G285100_v2.0.a1 Prupe.3G285100_v2.0.a1 Prupe.3G285100_v2.0.a1
pyrus_communis	pycom111g02630
rosa_chinensis	RchiOBHm_Chr2g0171681
rosa_laevigata	RLG00000022028
rosa_roxburghii	Rroxscaffold_2G00080530
rosa_rugosa	Rorug02G0555300
rosa_samantha	Rh2AG630300 Rh2BG640800 Rh2BG643300
rosa_wichuraiana	Rw2G052160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	90, 223, 366
AclWI	GGATC	2 cut(s)	12, 887
AcoI	YGGCCR	1 cut(s)	220
AcsI	RAATTY	1 cut(s)	331
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	2 cut(s)	191, 318
AflII	CTTAAG	1 cut(s)	776
AgsI	TTSAA	5 cut(s)	395, 418, 456, 542, 766
AjnI	CCWGG	3 cut(s)	11, 294, 1032
AleI	CACNNNNGTG	1 cut(s)	667
AluBI	AGCT	7 cut(s)	61, 201, 260, 429, 494, 808, 848
AluI	AGCT	7 cut(s)	61, 201, 260, 429, 494, 808, 848
Alw21I	GWGCWC	2 cut(s)	28, 810
Alw26I	GTCTC	2 cut(s)	126, 426
Alw44I	GTGCAC	1 cut(s)	24
AlwI	GGATC	2 cut(s)	12, 887
AoxI	GGCC	4 cut(s)	220, 359, 473, 658
ApaLI	GTGCAC	1 cut(s)	24
ApeKI	GCWGC	3 cut(s)	58, 164, 1037
ApoI	RAATTY	1 cut(s)	331
ArsI	GACNNNNNNTTYG	1 cut(s)	1127
AspA2I	CCTAGG	1 cut(s)	470
AspLEI	GCGC	1 cut(s)	1062
AspS9I	GGNCC	4 cut(s)	309, 659, 718, 1148
AsuC2I	CCSGG	1 cut(s)	363
AsuHPI	GGTGA	1 cut(s)	206
AvaII	GGWCC	3 cut(s)	309, 718, 1148
AvrII	CCTAGG	1 cut(s)	470
AxyI	CCTNAGG	1 cut(s)	477
BaeGI	GKGCMC	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	810
BbsI	GAAGAC	2 cut(s)	469, 530
Bbv12I	GWGCWC	2 cut(s)	28, 810
BbvI	GCAGC	3 cut(s)	70, 176, 1049
BccI	CCATC	3 cut(s)	227, 1003, 1010
BciT130I	CCWGG	3 cut(s)	13, 296, 1034
BclI	TGATCA	1 cut(s)	694
BcnI	CCSGG	1 cut(s)	363
BcoDI	GTCTC	2 cut(s)	126, 426
BfaI	CTAG	2 cut(s)	96, 471
BfmI	CTRYAG	2 cut(s)	370, 679
BfrI	CTTAAG	1 cut(s)	776
BisI	GCNGC	5 cut(s)	59, 165, 223, 367, 1038
BlnI	CCTAGG	1 cut(s)	470
BlpI	GCTNAGC	1 cut(s)	1056
BlsI	GCNGC	5 cut(s)	60, 166, 224, 368, 1039
Bme1390I	CCNGG	4 cut(s)	13, 296, 363, 1034
Bme18I	GGWCC	3 cut(s)	309, 718, 1148
BmgT120I	GGNCC	4 cut(s)	309, 659, 718, 1148
BmiI	GGNNCC	3 cut(s)	180, 310, 967
BmrFI	CCNGG	4 cut(s)	13, 296, 363, 1034
BmrI	ACTGGG	1 cut(s)	397
BmuI	ACTGGG	1 cut(s)	397
BpiI	GAAGAC	2 cut(s)	469, 530
BplI	GAGNNNNNCTC	4 cut(s)	418, 450, 470, 502
Bpu10I	CCTNAGC	3 cut(s)	54, 587, 756
Bpu1102I	GCTNAGC	1 cut(s)	1056
BpuMI	CCSGG	1 cut(s)	363
BsaJI	CCNNGG	2 cut(s)	470, 1032
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 318
Bse1I	ACTGG	3 cut(s)	346, 403, 1138
Bse21I	CCTNAGG	1 cut(s)	477
Bse3DI	GCAATG	1 cut(s)	874
BseBI	CCWGG	3 cut(s)	13, 296, 1034
BseDI	CCNNGG	2 cut(s)	470, 1032
BseGI	GGATG	2 cut(s)	211, 1021
BseLI	CCNNNNNNNGG	2 cut(s)	191, 318
BseMI	GCAATG	1 cut(s)	874
BseNI	ACTGG	3 cut(s)	346, 403, 1138
BseRI	GAGGAG	1 cut(s)	174
BseSI	GKGCMC	1 cut(s)	28
BseXI	GCAGC	3 cut(s)	70, 176, 1049
BseYI	CCCAGC	1 cut(s)	77
BshFI	GGCC	4 cut(s)	222, 361, 475, 660
BsiHKAI	GWGCWC	2 cut(s)	28, 810
BsiSI	CCGG	1 cut(s)	362
BslFI	GGGAC	3 cut(s)	322, 562, 583
BslI	CCNNNNNNNGG	2 cut(s)	191, 318
BsmAI	GTCTC	2 cut(s)	126, 426
BsmFI	GGGAC	3 cut(s)	322, 562, 583
BsmI	GAATGC	3 cut(s)	79, 390, 1062
BsnI	GGCC	4 cut(s)	222, 361, 475, 660
Bsp1286I	GDGCHC	2 cut(s)	28, 810
Bsp1407I	TGTACA	1 cut(s)	498
Bsp143I	GATC	5 cut(s)	4, 523, 694, 800, 892
Bsp1720I	GCTNAGC	1 cut(s)	1056
BspACI	CCGC	3 cut(s)	90, 223, 366
BspANI	GGCC	4 cut(s)	222, 361, 475, 660
BspLI	GGNNCC	3 cut(s)	180, 310, 967
BspPI	GGATC	2 cut(s)	12, 887
BspTI	CTTAAG	1 cut(s)	776
BsrDI	GCAATG	1 cut(s)	874
BsrGI	TGTACA	1 cut(s)	498
BsrI	ACTGG	3 cut(s)	346, 403, 1138
BssECI	CCNNGG	2 cut(s)	470, 1032
BssMI	GATC	5 cut(s)	4, 523, 694, 800, 892
BssT1I	CCWWGG	1 cut(s)	470
Bst2UI	CCWGG	3 cut(s)	13, 296, 1034
Bst4CI	ACNGT	5 cut(s)	536, 553, 795, 941, 970
BstAFI	CTTAAG	1 cut(s)	776
BstAPI	GCANNNNNTGC	2 cut(s)	74, 335
BstAUI	TGTACA	1 cut(s)	498
BstC8I	GCNNGC	1 cut(s)	674
BstF5I	GGATG	2 cut(s)	211, 1021
BstHHI	GCGC	1 cut(s)	1062
BstKTI	GATC	5 cut(s)	7, 526, 697, 803, 895
BstMAI	GTCTC	2 cut(s)	126, 426
BstMBI	GATC	5 cut(s)	4, 523, 694, 800, 892
BstMWI	GCNNNNNNNGC	6 cut(s)	58, 74, 161, 335, 372, 854
BstNI	CCWGG	3 cut(s)	13, 296, 1034
BstSCI	CCNGG	4 cut(s)	11, 294, 361, 1032
BstSFI	CTRYAG	2 cut(s)	370, 679
BstSLI	GKGCMC	1 cut(s)	28
BstV1I	GCAGC	3 cut(s)	70, 176, 1049
BstV2I	GAAGAC	2 cut(s)	469, 530
BstX2I	RGATCY	1 cut(s)	4
BstXI	CCANNNNNNTGG	1 cut(s)	1145
BstYI	RGATCY	1 cut(s)	4
Bsu36I	CCTNAGG	1 cut(s)	477
BsuRI	GGCC	4 cut(s)	222, 361, 475, 660
BtsCI	GGATG	2 cut(s)	211, 1021
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	2 cut(s)	75, 857
Cac8I	GCNNGC	1 cut(s)	674
CfoI	GCGC	1 cut(s)	1062
Cfr13I	GGNCC	4 cut(s)	309, 659, 718, 1148
Csp6I	GTAC	1 cut(s)	499
CviAII	CATG	4 cut(s)	323, 650, 665, 932
CviQI	GTAC	1 cut(s)	499
DpnI	GATC	5 cut(s)	6, 525, 696, 802, 894
DpnII	GATC	5 cut(s)	4, 523, 694, 800, 892
EaeI	YGGCCR	1 cut(s)	220
Ecl136II	GAGCTC	1 cut(s)	808
Eco130I	CCWWGG	1 cut(s)	470
Eco147I	AGGCCT	1 cut(s)	475
Eco24I	GRGCYC	1 cut(s)	810
Eco47I	GGWCC	3 cut(s)	309, 718, 1148
Eco53kI	GAGCTC	1 cut(s)	808
Eco57I	CTGAAG	1 cut(s)	83
Eco81I	CCTNAGG	1 cut(s)	477
EcoICRI	GAGCTC	1 cut(s)	808
EcoRII	CCWGG	3 cut(s)	11, 294, 1032
EcoT14I	CCWWGG	1 cut(s)	470
EcoT38I	GRGCYC	1 cut(s)	810
ErhI	CCWWGG	1 cut(s)	470
FaeI	CATG	4 cut(s)	326, 653, 668, 935
FaqI	GGGAC	3 cut(s)	322, 562, 583
FatI	CATG	4 cut(s)	322, 649, 664, 931
FbaI	TGATCA	1 cut(s)	694
Fnu4HI	GCNGC	5 cut(s)	59, 165, 223, 367, 1038
FokI	GGATG	2 cut(s)	198, 1028
FriOI	GRGCYC	1 cut(s)	810
Fsp4HI	GCNGC	5 cut(s)	59, 165, 223, 367, 1038
FspBI	CTAG	2 cut(s)	96, 471
GlaI	GCGC	1 cut(s)	1061
GluI	GCNGC	5 cut(s)	59, 165, 223, 367, 1038
GsaI	CCCAGC	1 cut(s)	81
HaeIII	GGCC	4 cut(s)	222, 361, 475, 660
HapII	CCGG	1 cut(s)	362
HhaI	GCGC	1 cut(s)	1062
Hin1II	CATG	4 cut(s)	326, 653, 668, 935
Hin6I	GCGC	1 cut(s)	1060
HinP1I	GCGC	1 cut(s)	1060
HincII	GTYRAC	1 cut(s)	937
HindII	GTYRAC	1 cut(s)	937
HindIII	AAGCTT	1 cut(s)	199
HinfI	GANTC	3 cut(s)	134, 299, 414
HpaII	CCGG	1 cut(s)	362
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	3 cut(s)	26, 501, 937
Hpy188I	TCNGA	9 cut(s)	145, 175, 209, 232, 426, 519, 744, 805, 1135
Hpy188III	TCNNGA	5 cut(s)	487, 586, 716, 758, 999
Hpy8I	GTNNAC	3 cut(s)	26, 501, 937
Hpy99I	CGWCG	1 cut(s)	836
HpyAV	CCTTC	3 cut(s)	58, 225, 620
HpyCH4III	ACNGT	5 cut(s)	536, 553, 795, 941, 970
HpyCH4IV	ACGT	1 cut(s)	831
HpyCH4V	TGCA	9 cut(s)	26, 271, 329, 338, 581, 649, 818, 857, 872
HpyF10VI	GCNNNNNNNGC	6 cut(s)	58, 74, 161, 335, 372, 854
HpySE526I	ACGT	1 cut(s)	831
Hsp92II	CATG	4 cut(s)	326, 653, 668, 935
HspAI	GCGC	1 cut(s)	1060
Ksp22I	TGATCA	1 cut(s)	694
Kzo9I	GATC	5 cut(s)	4, 523, 694, 800, 892
LmnI	GCTCC	2 cut(s)	629, 813
Lsp1109I	GCAGC	3 cut(s)	70, 176, 1049
MaeI	CTAG	2 cut(s)	96, 471
MaeII	ACGT	1 cut(s)	831
MaeIII	GTNAC	3 cut(s)	273, 917, 1099
MalI	GATC	5 cut(s)	6, 525, 696, 802, 894
MboI	GATC	5 cut(s)	4, 523, 694, 800, 892
MboII	GAAGA	4 cut(s)	196, 474, 530, 569
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	28, 810
MluCI	AATT	3 cut(s)	266, 313, 331
MlyI	GAGTC	2 cut(s)	128, 293
MmeI	TCCRAC	1 cut(s)	1107
MseI	TTAA	3 cut(s)	777, 797, 1153
MslI	CAYNNNNRTG	1 cut(s)	667
MspA1I	CMGCKG	1 cut(s)	61
MspCI	CTTAAG	1 cut(s)	776
MspI	CCGG	1 cut(s)	362
MspR9I	CCNGG	4 cut(s)	13, 296, 363, 1034
Mva1269I	GAATGC	3 cut(s)	79, 390, 1062
MvaI	CCWGG	3 cut(s)	13, 296, 1034
MwoI	GCNNNNNNNGC	6 cut(s)	58, 74, 161, 335, 372, 854
NciI	CCSGG	1 cut(s)	363
NdeII	GATC	5 cut(s)	4, 523, 694, 800, 892
NlaIII	CATG	4 cut(s)	326, 653, 668, 935
NlaIV	GGNNCC	3 cut(s)	180, 310, 967
NmuCI	GTSAC	1 cut(s)	1099
OliI	CACNNNNGTG	1 cut(s)	667
PceI	AGGCCT	1 cut(s)	475
PctI	GAATGC	3 cut(s)	79, 390, 1062
PfeI	GAWTC	1 cut(s)	414
PkrI	GCNGC	5 cut(s)	60, 166, 224, 368, 1039
PleI	GAGTC	2 cut(s)	128, 293
PpsI	GAGTC	2 cut(s)	128, 293
Psp124BI	GAGCTC	1 cut(s)	810
Psp6I	CCWGG	3 cut(s)	11, 294, 1032
PspFI	CCCAGC	1 cut(s)	77
PspGI	CCWGG	3 cut(s)	11, 294, 1032
PspN4I	GGNNCC	3 cut(s)	180, 310, 967
PspPI	GGNCC	4 cut(s)	309, 659, 718, 1148
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	61
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
RseI	CAYNNNNRTG	1 cut(s)	667
SacI	GAGCTC	1 cut(s)	810
SaqAI	TTAA	3 cut(s)	777, 797, 1153
SatI	GCNGC	5 cut(s)	59, 165, 223, 367, 1038
Sau3AI	GATC	5 cut(s)	4, 523, 694, 800, 892
Sau96I	GGNCC	4 cut(s)	309, 659, 718, 1148
SchI	GAGTC	2 cut(s)	128, 293
ScrFI	CCNGG	4 cut(s)	13, 296, 363, 1034
SduI	GDGCHC	2 cut(s)	28, 810
SfcI	CTRYAG	2 cut(s)	370, 679
SinI	GGWCC	3 cut(s)	309, 718, 1148
SmiMI	CAYNNNNRTG	1 cut(s)	667
SmlI	CTYRAG	1 cut(s)	776
SmoI	CTYRAG	1 cut(s)	776
Sse9I	AATT	3 cut(s)	266, 313, 331
SseBI	AGGCCT	1 cut(s)	475
SsiI	CCGC	3 cut(s)	90, 223, 366
SspMI	CTAG	2 cut(s)	96, 471
SstI	GAGCTC	1 cut(s)	810
StuI	AGGCCT	1 cut(s)	475
StyD4I	CCNGG	4 cut(s)	11, 294, 361, 1032
StyI	CCWWGG	1 cut(s)	470
TaaI	ACNGT	5 cut(s)	536, 553, 795, 941, 970
TaiI	ACGT	1 cut(s)	834
TaqI	TCGA	2 cut(s)	488, 834
TasI	AATT	3 cut(s)	266, 313, 331
TatI	WGTACW	1 cut(s)	498
TauI	GCSGC	2 cut(s)	225, 369
TfiI	GAWTC	1 cut(s)	414
Tru1I	TTAA	3 cut(s)	777, 797, 1153
Tru9I	TTAA	3 cut(s)	777, 797, 1153
TscAI	CASTG	2 cut(s)	75, 864
TseFI	GTSAC	1 cut(s)	1099
TseI	GCWGC	3 cut(s)	58, 164, 1037
Tsp45I	GTSAC	1 cut(s)	1099
TspDTI	ATGAA	3 cut(s)	339, 371, 397
TspRI	CASTG	2 cut(s)	75, 864
Vha464I	CTTAAG	1 cut(s)	776
VneI	GTGCAC	1 cut(s)	24
VpaK11BI	GGWCC	3 cut(s)	309, 718, 1148
XapI	RAATTY	1 cut(s)	331
XcmI	CCANNNNNNNNNTGG	1 cut(s)	938
XmaJI	CCTAGG	1 cut(s)	470
XspI	CTAG	2 cut(s)	96, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.