Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0010447

Physical Location & Seq

Genomic Coordinates Forward (+)

1582228 .. 1583918

Gene Structure 1691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g02630.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGATTTTCTCAGGCTACTTTGTGCAGCTGTGCTTCTAGTTTTGGGGTTGCTGCTGGGAGGACAGAAGGCGGTGAATGCTGGTTCTGATGGCGGTTCCGGGAGTTGTCGCTTTCCAGCCATATACAACTTTGGGGACTCAAACTCTGACACTGGGGCTATCTCAGCTGCCATATCCGAAGTTCCTCCTCCTAATGGTGAAACCTTCTTTGGAAAACCTTCCGGGCGCTTGTCTGATGGCCGTCTTATAATCGACTTTATCGCTGAGAAGATGCAGATACCATATCTTAGTCCATATCTGGACTCACTTGGGACTAATTTCCGGCATGGTGCGAATTTCGCAACCGGTGGTTCATCGATTAGGCCAGGCGGTTATAGTCCGCCGGAGGACTTCCCGAAGGCTCTCTACACTTTCGATATTGGTCAGAATGATCTGGCCTACGGCATCCAACATGGGACGATAGAAGAAGTTAGAACCTCCATTCCTGCCATCCTGAGCCAGTTATCGCAAGCAATATCCCAACTATACAAGGAAGAAGCTAGGTTTTTCTGGGTGCATAACACAGGTCCTCAAGGATGCTTGCCCTATAGCGTTATTTACGACAAATCAAAGCCTGGTAATCTGGACAAGAGCGGCTGCGTGAAGCCTCTCAATGCGGTGGCTCAGGAGTTCAACCGACAGCTTAAGAACAGCATAATGCGGTTGAGATCACGGCTCCCTCTTGCAGCATTCACGTACGTCGATGTGTACTCGGCTAAATACACTCTCATTTCCGATGCTAAAAAACAAGGTTTTGTTGATCCTTTCGACTTTTGCTGCGGCAGTTACTACGGATTCCACATTGATTGCGGAAGGAAAGCCGTAGTGAATGGAACTGTGTATGGCAATCCTTGCAGCAGTCCGACAACGCATATTAGTTGGGATGGGATACACTACTCCCAGGCCGCCAATGCACTGATTGCCAGTCGCATTCTCAACGGCTCACTCTCTGACCCCCCAGTTTCAATCACGCACGCTTGTCACAGTTCCAAGAACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

347

Amino Acids

37.31

Weight (kDa)

7.56

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27950
fragaria_vesca	FvH4_6g50740 FvH4_6g50740 FvH4_6g50740 FvH4_6g50740 FvH4_6g50740 FvH4_6g50740
malus_domestica	MD09G1033000.v1.1
prunus_persica	Prupe.3G285100_v2.0.a1 Prupe.3G285100_v2.0.a1 Prupe.3G285100_v2.0.a1 Prupe.3G285100_v2.0.a1
pyrus_communis	pycom111g02630
rosa_chinensis	RchiOBHm_Chr2g0171681
rosa_laevigata	RLG00000022028
rosa_roxburghii	Rroxscaffold_2G00080530
rosa_rugosa	Rorug02G0555300
rosa_samantha	Rh2AG630300 Rh2BG640800 Rh2BG643300
rosa_wichuraiana	Rw2G052160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	248
AccBSI	CCGCTC	1 cut(s)	633
AclWI	GGATC	1 cut(s)	794
AcoI	YGGCCR	1 cut(s)	238
AcsI	RAATTY	1 cut(s)	334
AfaI	GTAC	2 cut(s)	737, 749
AfiI	CCNNNNNNNGG	1 cut(s)	194
AflII	CTTAAG	1 cut(s)	683
AgeI	ACCGGT	1 cut(s)	344
AgsI	TTSAA	2 cut(s)	673, 1005
AjnI	CCWGG	3 cut(s)	364, 613, 939
AjuI	GAANNNNNNNTTGG	2 cut(s)	192, 224
AloI	GAACNNNNNNTCC	2 cut(s)	466, 498
AluBI	AGCT	4 cut(s)	29, 167, 539, 682
AluI	AGCT	4 cut(s)	29, 167, 539, 682
AlwI	GGATC	1 cut(s)	794
AoxI	GGCC	4 cut(s)	238, 362, 435, 942
ApeKI	GCWGC	7 cut(s)	26, 52, 167, 636, 725, 816, 894
ApoI	RAATTY	1 cut(s)	334
AsiGI	ACCGGT	1 cut(s)	344
Asp700I	GAANNNNTTC	1 cut(s)	217
AspLEI	GCGC	1 cut(s)	228
AspS9I	GGNCC	1 cut(s)	566
AsuC2I	CCSGG	2 cut(s)	100, 223
AsuHPI	GGTGA	2 cut(s)	85, 209
AvaII	GGWCC	1 cut(s)	566
BarI	GAAGNNNNNNTAC	2 cut(s)	389, 421
BbvI	GCAGC	7 cut(s)	38, 39, 154, 623, 737, 803, 906
BccI	CCATC	4 cut(s)	83, 230, 497, 917
BceAI	ACGGC	5 cut(s)	225, 457, 728, 845, 994
BciT130I	CCWGG	3 cut(s)	366, 615, 941
BciVI	GTATCC	1 cut(s)	921
BcnI	CCSGG	2 cut(s)	100, 223
BfaI	CTAG	2 cut(s)	38, 540
BfmI	CTRYAG	1 cut(s)	586
BfoI	RGCGCY	1 cut(s)	229
BfrI	CTTAAG	1 cut(s)	683
BfuI	GTATCC	1 cut(s)	921
Bme1390I	CCNGG	5 cut(s)	100, 223, 366, 615, 941
Bme18I	GGWCC	1 cut(s)	566
BmgT120I	GGNCC	1 cut(s)	566
BmiI	GGNNCC	2 cut(s)	97, 716
BmrFI	CCNGG	5 cut(s)	100, 223, 366, 615, 941
BmrI	ACTGGG	2 cut(s)	162, 992
BmsI	GCATC	4 cut(s)	261, 453, 566, 766
BmuI	ACTGGG	2 cut(s)	162, 992
Bpu10I	CCTNAGC	2 cut(s)	494, 663
BpuEI	CTTGAG	1 cut(s)	555
BpuMI	CCSGG	2 cut(s)	100, 223
Bsa29I	ATCGAT	1 cut(s)	356
BsaAI	YACGTR	1 cut(s)	735
BsaJI	CCNNGG	1 cut(s)	939
BsaWI	WCCGGW	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse118I	RCCGGY	1 cut(s)	344
Bse1I	ACTGG	4 cut(s)	157, 499, 963, 998
BseBI	CCWGG	3 cut(s)	366, 615, 941
BseCI	ATCGAT	1 cut(s)	356
BseDI	CCNNGG	1 cut(s)	939
BseGI	GGATG	4 cut(s)	444, 489, 581, 928
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMII	CTCAG	5 cut(s)	25, 177, 255, 485, 677
BseNI	ACTGG	4 cut(s)	157, 499, 963, 998
BseRI	GAGGAG	1 cut(s)	177
BseXI	GCAGC	7 cut(s)	38, 39, 154, 623, 737, 803, 906
BseYI	CCCAGC	1 cut(s)	55
BsgI	GTGCAG	1 cut(s)	45
BshFI	GGCC	4 cut(s)	240, 364, 437, 944
BshTI	ACCGGT	1 cut(s)	344
BshVI	ATCGAT	1 cut(s)	356
BsiSI	CCGG	5 cut(s)	99, 222, 322, 345, 383
BsiWI	CGTACG	1 cut(s)	735
BslFI	GGGAC	3 cut(s)	149, 325, 469
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmFI	GGGAC	3 cut(s)	149, 325, 469
BsmI	GAATGC	3 cut(s)	82, 728, 969
BsnI	GGCC	4 cut(s)	240, 364, 437, 944
Bsp143I	GATC	3 cut(s)	430, 707, 799
BspANI	GGCC	4 cut(s)	240, 364, 437, 944
BspCNI	CTCAG	5 cut(s)	24, 176, 256, 486, 676
BspDI	ATCGAT	1 cut(s)	356
BspLI	GGNNCC	2 cut(s)	97, 716
BspPI	GGATC	1 cut(s)	794
BspTI	CTTAAG	1 cut(s)	683
BsrBI	CCGCTC	1 cut(s)	633
BsrFI	RCCGGY	1 cut(s)	344
BsrI	ACTGG	4 cut(s)	157, 499, 963, 998
BssAI	RCCGGY	1 cut(s)	344
BssECI	CCNNGG	1 cut(s)	939
BssMI	GATC	3 cut(s)	430, 707, 799
Bst2UI	CCWGG	3 cut(s)	366, 615, 941
Bst4CI	ACNGT	2 cut(s)	877, 1025
BstAFI	CTTAAG	1 cut(s)	683
BstAPI	GCANNNNNTGC	2 cut(s)	891, 959
BstBAI	YACGTR	1 cut(s)	735
BstC8I	GCNNGC	3 cut(s)	510, 581, 1014
BstDEI	CTNAG	6 cut(s)	11, 163, 264, 287, 494, 663
BstF5I	GGATG	4 cut(s)	444, 489, 581, 928
BstH2I	RGCGCY	1 cut(s)	229
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	3 cut(s)	433, 710, 802
BstMBI	GATC	3 cut(s)	430, 707, 799
BstMWI	GCNNNNNNNGC	6 cut(s)	77, 164, 338, 891, 950, 959
BstNI	CCWGG	3 cut(s)	366, 615, 941
BstSCI	CCNGG	5 cut(s)	98, 221, 364, 613, 939
BstSFI	CTRYAG	1 cut(s)	586
BstV1I	GCAGC	7 cut(s)	38, 39, 154, 623, 737, 803, 906
Bsu15I	ATCGAT	1 cut(s)	356
BsuI	GTATCC	1 cut(s)	921
BsuRI	GGCC	4 cut(s)	240, 364, 437, 944
BsuTUI	ATCGAT	1 cut(s)	356
BtsCI	GGATG	4 cut(s)	444, 489, 581, 928
BtsIMutI	CAGTG	2 cut(s)	150, 953
Cac8I	GCNNGC	3 cut(s)	510, 581, 1014
CfoI	GCGC	1 cut(s)	228
Cfr10I	RCCGGY	1 cut(s)	344
Cfr13I	GGNCC	1 cut(s)	566
ClaI	ATCGAT	1 cut(s)	356
Csp6I	GTAC	2 cut(s)	736, 748
CspAI	ACCGGT	1 cut(s)	344
CspCI	CAANNNNNGTGG	2 cut(s)	827, 862
CviAII	CATG	3 cut(s)	326, 452, 1038
CviQI	GTAC	2 cut(s)	736, 748
DdeI	CTNAG	6 cut(s)	11, 163, 264, 287, 494, 663
DpnI	GATC	3 cut(s)	432, 709, 801
DpnII	GATC	3 cut(s)	430, 707, 799
EaeI	YGGCCR	1 cut(s)	238
EciI	GGCGGA	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	566
EcoO109I	RGGNCCY	1 cut(s)	566
EcoRII	CCWGG	3 cut(s)	364, 613, 939
FaeI	CATG	3 cut(s)	329, 455, 1041
FaqI	GGGAC	3 cut(s)	149, 325, 469
FatI	CATG	3 cut(s)	325, 451, 1037
FokI	GGATG	4 cut(s)	431, 476, 588, 935
FspBI	CTAG	2 cut(s)	38, 540
GlaI	GCGC	1 cut(s)	227
GsaI	CCCAGC	1 cut(s)	59
HaeII	RGCGCY	1 cut(s)	229
HaeIII	GGCC	4 cut(s)	240, 364, 437, 944
HapII	CCGG	5 cut(s)	99, 222, 322, 345, 383
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	3 cut(s)	329, 455, 1041
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HinfI	GANTC	3 cut(s)	137, 302, 834
HpaII	CCGG	5 cut(s)	99, 222, 322, 345, 383
HphI	GGTGA	2 cut(s)	85, 209
Hpy166II	GTNNAC	1 cut(s)	748
Hpy188I	TCNGA	8 cut(s)	88, 148, 178, 235, 426, 775, 903, 991
Hpy188III	TCNNGA	5 cut(s)	299, 394, 493, 623, 665
Hpy8I	GTNNAC	1 cut(s)	748
Hpy99I	CGWCG	1 cut(s)	743
HpyAV	CCTTC	5 cut(s)	61, 214, 228, 391, 846
HpyCH4III	ACNGT	2 cut(s)	877, 1025
HpyCH4IV	ACGT	2 cut(s)	734, 738
HpyCH4V	TGCA	6 cut(s)	26, 274, 556, 725, 894, 953
HpyF10VI	GCNNNNNNNGC	6 cut(s)	77, 164, 338, 891, 950, 959
HpyF3I	CTNAG	6 cut(s)	11, 163, 264, 287, 494, 663
HpySE526I	ACGT	2 cut(s)	734, 738
Hsp92II	CATG	3 cut(s)	329, 455, 1041
HspAI	GCGC	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	430, 707, 799
LmnI	GCTCC	1 cut(s)	720
Lsp1109I	GCAGC	7 cut(s)	38, 39, 154, 623, 737, 803, 906
LweI	GCATC	4 cut(s)	261, 453, 566, 766
MaeI	CTAG	2 cut(s)	38, 540
MaeII	ACGT	2 cut(s)	734, 738
MaeIII	GTNAC	2 cut(s)	824, 1019
MalI	GATC	3 cut(s)	432, 709, 801
MbiI	CCGCTC	1 cut(s)	633
MboI	GATC	3 cut(s)	430, 707, 799
MboII	GAAGA	3 cut(s)	280, 476, 545
MluCI	AATT	2 cut(s)	316, 334
MlyI	GAGTC	2 cut(s)	131, 296
MmeI	TCCRAC	2 cut(s)	472, 926
MnlI	CCTC	8 cut(s)	53, 195, 198, 379, 487, 579, 657, 729
MroXI	GAANNNNTTC	1 cut(s)	217
MseI	TTAA	1 cut(s)	684
MspA1I	CMGCKG	2 cut(s)	29, 167
MspCI	CTTAAG	1 cut(s)	683
MspI	CCGG	5 cut(s)	99, 222, 322, 345, 383
MspR9I	CCNGG	5 cut(s)	100, 223, 366, 615, 941
Mva1269I	GAATGC	3 cut(s)	82, 728, 969
MvaI	CCWGG	3 cut(s)	366, 615, 941
MwoI	GCNNNNNNNGC	6 cut(s)	77, 164, 338, 891, 950, 959
NciI	CCSGG	2 cut(s)	100, 223
NdeII	GATC	3 cut(s)	430, 707, 799
NlaIII	CATG	3 cut(s)	329, 455, 1041
NlaIV	GGNNCC	2 cut(s)	97, 716
NmeAIII	GCCGAG	1 cut(s)	731
NmuCI	GTSAC	1 cut(s)	1019
PctI	GAATGC	3 cut(s)	82, 728, 969
PdmI	GAANNNNTTC	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	834
Pfl23II	CGTACG	1 cut(s)	735
PfoI	TCCNGGA	1 cut(s)	98
PinAI	ACCGGT	1 cut(s)	344
PleI	GAGTC	2 cut(s)	131, 296
PpsI	GAGTC	2 cut(s)	131, 296
Ppu21I	YACGTR	1 cut(s)	735
PpuMI	RGGWCCY	1 cut(s)	566
PsiI	TTATAA	1 cut(s)	248
Psp5II	RGGWCCY	1 cut(s)	566
Psp6I	CCWGG	3 cut(s)	364, 613, 939
PspFI	CCCAGC	1 cut(s)	55
PspGI	CCWGG	3 cut(s)	364, 613, 939
PspLI	CGTACG	1 cut(s)	735
PspN4I	GGNNCC	2 cut(s)	97, 716
PspPI	GGNCC	1 cut(s)	566
PspPPI	RGGWCCY	1 cut(s)	566
PvuII	CAGCTG	2 cut(s)	29, 167
RsaI	GTAC	2 cut(s)	737, 749
RsaNI	GTAC	2 cut(s)	736, 748
SaqAI	TTAA	1 cut(s)	684
Sau3AI	GATC	3 cut(s)	430, 707, 799
Sau96I	GGNCC	1 cut(s)	566
SchI	GAGTC	2 cut(s)	131, 296
ScrFI	CCNGG	5 cut(s)	100, 223, 366, 615, 941
SfaNI	GCATC	4 cut(s)	261, 453, 566, 766
SfcI	CTRYAG	1 cut(s)	586
SinI	GGWCC	1 cut(s)	566
SmlI	CTYRAG	2 cut(s)	570, 683
SmoI	CTYRAG	2 cut(s)	570, 683
Sse9I	AATT	2 cut(s)	316, 334
SspMI	CTAG	2 cut(s)	38, 540
StyD4I	CCNGG	5 cut(s)	98, 221, 364, 613, 939
TaaI	ACNGT	2 cut(s)	877, 1025
TaiI	ACGT	2 cut(s)	737, 741
TaqI	TCGA	5 cut(s)	252, 356, 414, 741, 807
TasI	AATT	2 cut(s)	316, 334
TatI	WGTACW	1 cut(s)	747
TauI	GCSGC	3 cut(s)	636, 822, 947
TfiI	GAWTC	1 cut(s)	834
Tru1I	TTAA	1 cut(s)	684
Tru9I	TTAA	1 cut(s)	684
TscAI	CASTG	2 cut(s)	157, 960
TseFI	GTSAC	1 cut(s)	1019
TseI	GCWGC	7 cut(s)	26, 52, 167, 636, 725, 816, 894
Tsp45I	GTSAC	1 cut(s)	1019
TspDTI	ATGAA	1 cut(s)	342
TspGWI	ACGGA	1 cut(s)	846
TspRI	CASTG	2 cut(s)	157, 960
Vha464I	CTTAAG	1 cut(s)	683
VpaK11BI	GGWCC	1 cut(s)	566
XapI	RAATTY	1 cut(s)	334
XmnI	GAANNNNTTC	1 cut(s)	217
XspI	CTAG	2 cut(s)	38, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.