Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0016777

Physical Location & Seq

Genomic Coordinates Reverse (-)

552570 .. 553843

Gene Structure 1274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G011400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCTGGAGAATATGGTTTGAAGGTGGTGGTGGCGATTGTGGTTTTGGCCACTGTGAGCCTTGGAGGGATTTGTGGGGTTGGAGCCCAACTGCACCATGTCGTTGGAGGAGACCGTGGCTGGGACCCTTCTTCCGACCTCGCTTCTTGGTCCTCCAACAAAACTTTCAGGGTCGGAGACAACATCTGGTTAGCCTACTCTGCAGCGCATGGGTACATAGCTGAAGTGAAGAGCAAGGAGGAATTCGAGTCATGCGATGTAGGCAACCCAATCAGGATGTTCACGGACGGTTTGGATAGCATCTCTATGGACCAGGAGGGACTCCGCTACTTCGCCAGCAGTAACGTGGAGAGCTGCAAGAATGGGCTCAAGTTGCACGTGCAAGTCATGCCTCAATCTTATCAAAACCCTGAAACGCCCAACCCCAAAATAGCAATAGCAAAACCAAACAGCTCTCTGTTGGCTGCAGCTGCTGCGGGGCCCACAACTCCTTCTGGCTCAACCCGCCTCACCGCTGCAAGTTTCATTTTGTTGTCATTTGGTTTGCTTTGTTATGTAATGGGTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009536 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

190

Amino Acids

19.96

Weight (kDa)

5.75

Isoelectric Point (pI)

30.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016777)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g01050
malus_domestica	MD05G1357200.v1.1
prunus_persica	Prupe.4G011400_v2.0.a1
pyrus_communis	pycom10g28040
rosa_chinensis	RchiOBHm_Chr5g0001591
rosa_laevigata	RLG00000030945
rosa_multiflora	Rmu_sc0041139.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074730
rosa_rugosa	Rorug04G0391200
rosa_samantha	Rh5AG012600 Rh5BG015500 Rh5CG013600 Rh5DG013400
rosa_wichuraiana	Rw5G001210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	325, 476, 505, 513
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	242
AcuI	CTGAAG	1 cut(s)	243
AcvI	CACGTG	1 cut(s)	379
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	121
AgsI	TTSAA	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	312
AjuI	GAANNNNNNNTTGG	2 cut(s)	149, 181
AluBI	AGCT	4 cut(s)	221, 354, 453, 470
AluI	AGCT	4 cut(s)	221, 354, 453, 470
Alw26I	GTCTC	2 cut(s)	105, 171
AlwNI	CAGNNNCTG	1 cut(s)	473
AoxI	GGCC	2 cut(s)	48, 479
ApaI	GGGCCC	1 cut(s)	483
ApeKI	GCWGC	7 cut(s)	203, 354, 464, 467, 470, 473, 515
ApoI	RAATTY	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	5 cut(s)	124, 150, 310, 479, 480
AsuHPI	GGTGA	1 cut(s)	502
AvaII	GGWCC	3 cut(s)	124, 150, 310
BaeGI	GKGCMC	1 cut(s)	483
BalI	TGGCCA	1 cut(s)	50
BanII	GRGCYC	3 cut(s)	88, 369, 483
BbrPI	CACGTG	1 cut(s)	379
BbvI	GCAGC	7 cut(s)	215, 341, 451, 457, 460, 479, 502
BciT130I	CCWGG	1 cut(s)	314
BcoDI	GTCTC	2 cut(s)	105, 171
BfmI	CTRYAG	2 cut(s)	201, 465
BisI	GCNGC	7 cut(s)	204, 355, 465, 468, 471, 474, 516
BlsI	GCNGC	7 cut(s)	205, 356, 466, 469, 472, 475, 517
Bme1390I	CCNGG	1 cut(s)	314
Bme18I	GGWCC	3 cut(s)	124, 150, 310
BmgT120I	GGNCC	5 cut(s)	124, 150, 310, 479, 480
BmiI	GGNNCC	5 cut(s)	85, 125, 126, 480, 481
BmrFI	CCNGG	1 cut(s)	314
BmsI	GCATC	1 cut(s)	309
BpmI	CTGGAG	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	353
BsaAI	YACGTR	1 cut(s)	379
BsaI	GGTCTC	1 cut(s)	105
BsaJI	CCNNGG	2 cut(s)	61, 115
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	61, 115
BseGI	GGATG	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseRI	GAGGAG	1 cut(s)	123
BseSI	GKGCMC	1 cut(s)	483
BseXI	GCAGC	7 cut(s)	215, 341, 451, 457, 460, 479, 502
BseYI	CCCAGC	1 cut(s)	120
BsgI	GTGCAG	1 cut(s)	77
BshFI	GGCC	2 cut(s)	50, 481
BslFI	GGGAC	2 cut(s)	137, 333
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	2 cut(s)	105, 171
BsmFI	GGGAC	2 cut(s)	137, 333
BsnI	GGCC	2 cut(s)	50, 481
Bso31I	GGTCTC	1 cut(s)	105
Bsp120I	GGGCCC	1 cut(s)	479
Bsp1286I	GDGCHC	3 cut(s)	88, 369, 483
BspACI	CCGC	4 cut(s)	325, 476, 505, 513
BspANI	GGCC	2 cut(s)	50, 481
BspLI	GGNNCC	5 cut(s)	85, 125, 126, 480, 481
BspMAI	CTGCAG	2 cut(s)	205, 469
BspQI	GCTCTTC	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	105
BssECI	CCNNGG	2 cut(s)	61, 115
BssT1I	CCWWGG	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	3 cut(s)	55, 116, 290
Bst6I	CTCTTC	1 cut(s)	224
BstAPI	GCANNNNNTGC	2 cut(s)	388, 473
BstBAI	YACGTR	1 cut(s)	379
BstC8I	GCNNGC	1 cut(s)	337
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	208
BstMAI	GTCTC	2 cut(s)	105, 171
BstMWI	GCNNNNNNNGC	7 cut(s)	200, 261, 373, 388, 470, 473, 504
BstNI	CCWGG	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	312
BstSFI	CTRYAG	2 cut(s)	201, 465
BstSLI	GKGCMC	1 cut(s)	483
BstV1I	GCAGC	7 cut(s)	215, 341, 451, 457, 460, 479, 502
BstXI	CCANNNNNNTGG	1 cut(s)	104
BsuRI	GGCC	2 cut(s)	50, 481
BtgI	CCRYGG	1 cut(s)	115
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	337
CaiI	CAGNNNCTG	1 cut(s)	473
CfoI	GCGC	1 cut(s)	208
Cfr13I	GGNCC	5 cut(s)	124, 150, 310, 479, 480
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	4 cut(s)	98, 209, 252, 388
CviQI	GTAC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	61
Eco24I	GRGCYC	3 cut(s)	88, 369, 483
Eco31I	GGTCTC	1 cut(s)	105
Eco47I	GGWCC	3 cut(s)	124, 150, 310
Eco57I	CTGAAG	1 cut(s)	243
Eco72I	CACGTG	1 cut(s)	379
EcoO109I	RGGNCCY	2 cut(s)	124, 479
EcoRI	GAATTC	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	61
EcoT38I	GRGCYC	3 cut(s)	88, 369, 483
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	4 cut(s)	101, 212, 255, 391
FaiI	YATR	8 cut(s)	15, 99, 210, 218, 253, 308, 389, 555
FaqI	GGGAC	2 cut(s)	137, 333
FatI	CATG	4 cut(s)	97, 208, 251, 387
FauI	CCCGC	2 cut(s)	469, 512
Fnu4HI	GCNGC	7 cut(s)	204, 355, 465, 468, 471, 474, 516
FokI	GGATG	1 cut(s)	289
FriOI	GRGCYC	3 cut(s)	88, 369, 483
Fsp4HI	GCNGC	7 cut(s)	204, 355, 465, 468, 471, 474, 516
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	7 cut(s)	204, 355, 465, 468, 471, 474, 516
GsaI	CCCAGC	1 cut(s)	124
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	2 cut(s)	50, 481
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	4 cut(s)	101, 212, 255, 391
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HinfI	GANTC	2 cut(s)	248, 321
HphI	GGTGA	1 cut(s)	502
Hpy166II	GTNNAC	1 cut(s)	282
Hpy188I	TCNGA	2 cut(s)	136, 176
Hpy188III	TCNNGA	1 cut(s)	274
Hpy8I	GTNNAC	1 cut(s)	282
HpyAV	CCTTC	3 cut(s)	16, 138, 501
HpyCH4III	ACNGT	3 cut(s)	55, 116, 290
HpyCH4IV	ACGT	2 cut(s)	345, 378
HpyCH4V	TGCA	7 cut(s)	94, 203, 357, 376, 382, 467, 518
HpyF10VI	GCNNNNNNNGC	7 cut(s)	200, 261, 373, 388, 470, 473, 504
HpySE526I	ACGT	2 cut(s)	345, 378
Hsp92II	CATG	4 cut(s)	101, 212, 255, 391
HspAI	GCGC	1 cut(s)	206
KflI	GGGWCCC	1 cut(s)	124
LguI	GCTCTTC	1 cut(s)	224
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	9 cut(s)	106, 154, 172, 259, 299, 326, 349, 423, 480
Lsp1109I	GCAGC	7 cut(s)	215, 341, 451, 457, 460, 479, 502
LweI	GCATC	1 cut(s)	309
MaeII	ACGT	2 cut(s)	345, 378
MaeIII	GTNAC	1 cut(s)	341
MboII	GAAGA	2 cut(s)	123, 241
MhlI	GDGCHC	3 cut(s)	88, 369, 483
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	1 cut(s)	242
MluNI	TGGCCA	1 cut(s)	50
MlyI	GAGTC	2 cut(s)	257, 315
MmeI	TCCRAC	5 cut(s)	61, 85, 154, 159, 180
MnlI	CCTC	8 cut(s)	59, 101, 149, 163, 232, 310, 402, 518
Mox20I	TGGCCA	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	50
MslI	CAYNNNNRTG	1 cut(s)	305
Msp20I	TGGCCA	1 cut(s)	50
MspA1I	CMGCKG	2 cut(s)	470, 515
MspR9I	CCNGG	1 cut(s)	314
MvaI	CCWGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	7 cut(s)	200, 261, 373, 388, 470, 473, 504
NlaIII	CATG	4 cut(s)	101, 212, 255, 391
NlaIV	GGNNCC	5 cut(s)	85, 125, 126, 480, 481
PciSI	GCTCTTC	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PkrI	GCNGC	7 cut(s)	205, 356, 466, 469, 472, 475, 517
PleI	GAGTC	2 cut(s)	256, 315
PmaCI	CACGTG	1 cut(s)	379
PmlI	CACGTG	1 cut(s)	379
PpsI	GAGTC	2 cut(s)	256, 315
Ppu21I	YACGTR	1 cut(s)	379
PpuMI	RGGWCCY	1 cut(s)	124
Psp5II	RGGWCCY	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	312
PspCI	CACGTG	1 cut(s)	379
PspFI	CCCAGC	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	5 cut(s)	85, 125, 126, 480, 481
PspOMI	GGGCCC	1 cut(s)	479
PspPI	GGNCC	5 cut(s)	124, 150, 310, 479, 480
PspPPI	RGGWCCY	1 cut(s)	124
PstI	CTGCAG	2 cut(s)	205, 469
PstNI	CAGNNNCTG	1 cut(s)	473
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	1 cut(s)	305
SapI	GCTCTTC	1 cut(s)	224
SatI	GCNGC	7 cut(s)	204, 355, 465, 468, 471, 474, 516
Sau96I	GGNCC	5 cut(s)	124, 150, 310, 479, 480
SchI	GAGTC	2 cut(s)	257, 315
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	3 cut(s)	88, 369, 483
SetI	ASST	8 cut(s)	27, 141, 223, 348, 356, 381, 455, 472
SfaNI	GCATC	1 cut(s)	309
SfcI	CTRYAG	2 cut(s)	201, 465
SinI	GGWCC	3 cut(s)	124, 150, 310
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	1 cut(s)	242
SsiI	CCGC	4 cut(s)	325, 476, 505, 513
StyD4I	CCNGG	1 cut(s)	312
StyI	CCWWGG	1 cut(s)	61
TaaI	ACNGT	3 cut(s)	55, 116, 290
TaiI	ACGT	2 cut(s)	348, 381
TaqI	TCGA	1 cut(s)	246
TasI	AATT	1 cut(s)	242
TscAI	CASTG	1 cut(s)	58
TseI	GCWGC	7 cut(s)	203, 354, 464, 467, 470, 473, 515
TspDTI	ATGAA	1 cut(s)	514
TspGWI	ACGGA	1 cut(s)	299
TspRI	CASTG	1 cut(s)	58
VpaK11BI	GGWCC	3 cut(s)	124, 150, 310
XapI	RAATTY	1 cut(s)	242
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.