Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0016777

Physical Location & Seq

Genomic Coordinates Forward (+)

95615525 .. 95616287

Gene Structure 763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00074730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCTGGATTGAAGGTGGTGTTTGTTGTTTTTGCCATCAGTTTCAGCCTTGGAGGGAACTGGGTCGGAGCTCAAGTCCACCATGTAGTCGGAGGAGATCGTGGCTGGGATCCGGCTAATTCCGATCTCACTTCTTGGTCCTCCGGCAAAAGCTTTATGGTCGGAGACACACTCTCACATGGGTTCATAGCAGAAGTGAAAAGCAAGGAGGAATTCGAATCTTGTGATGTGAGCAATCCGATCAGAATGTTCACAGATGGCTTGGATAGCACCCCCATGGACAAGGAAGGACTCCGCTACTTCACAAGCAGTAACCCTGAGAGCTGCAAGAATGGCCTCAAGTTACACGTTCAAGTCGTGCCTCATCAGGATCGATCTCAAACTGCAATGCCGATAGTGGCGACATCCGAGATCTCTGCATTGGCTGCAGGGCCAACTACTCCTTCTGGTTCAGCTCATCTCAGTTCAAGTCTCATTTTGTTGTCATTGGGTTTGCTTTGCTATGTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009536 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

170

Amino Acids

18.09

Weight (kDa)

5.58

Isoelectric Point (pI)

30.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	37 - 112	6.1e-15	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016777)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g01050
malus_domestica	MD05G1357200.v1.1
prunus_persica	Prupe.4G011400_v2.0.a1
pyrus_communis	pycom10g28040
rosa_chinensis	RchiOBHm_Chr5g0001591
rosa_laevigata	RLG00000030945
rosa_multiflora	Rmu_sc0041139.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074730
rosa_rugosa	Rorug04G0391200
rosa_samantha	Rh5AG012600 Rh5BG015500 Rh5CG013600 Rh5DG013400
rosa_wichuraiana	Rw5G001210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	295
AclWI	GGATC	3 cut(s)	104, 117, 378
AcsI	RAATTY	1 cut(s)	212
AflIII	ACRYGT	1 cut(s)	346
AgsI	TTSAA	3 cut(s)	13, 353, 468
AjuI	GAANNNNNNNTTGG	2 cut(s)	427, 459
AluBI	AGCT	4 cut(s)	71, 153, 324, 455
AluI	AGCT	4 cut(s)	71, 153, 324, 455
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	2 cut(s)	159, 476
AlwI	GGATC	3 cut(s)	104, 117, 378
AoxI	GGCC	2 cut(s)	334, 431
ApeKI	GCWGC	2 cut(s)	324, 425
ApoI	RAATTY	1 cut(s)	212
AspS9I	GGNCC	2 cut(s)	138, 431
AsuII	TTCGAA	1 cut(s)	216
AvaII	GGWCC	1 cut(s)	138
BamHI	GGATCC	1 cut(s)	109
BanII	GRGCYC	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	73
BbvI	GCAGC	2 cut(s)	311, 412
BccI	CCATC	2 cut(s)	44, 251
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BcoDI	GTCTC	2 cut(s)	159, 476
BfmI	CTRYAG	1 cut(s)	426
BglII	AGATCT	1 cut(s)	411
BisI	GCNGC	2 cut(s)	325, 426
BlsI	GCNGC	2 cut(s)	326, 427
Bme18I	GGWCC	1 cut(s)	138
BmgT120I	GGNCC	2 cut(s)	138, 431
BmiI	GGNNCC	1 cut(s)	111
BmrI	ACTGGG	1 cut(s)	70
BmuI	ACTGGG	1 cut(s)	70
BplI	GAGNNNNNCTC	2 cut(s)	156, 188
Bpu14I	TTCGAA	1 cut(s)	216
BpuEI	CTTGAG	2 cut(s)	57, 323
Bsa29I	ATCGAT	1 cut(s)	373
BsaJI	CCNNGG	2 cut(s)	49, 276
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bse1I	ACTGG	1 cut(s)	65
Bse3DI	GCAATG	1 cut(s)	393
BseCI	ATCGAT	1 cut(s)	373
BseDI	CCNNGG	2 cut(s)	49, 276
BseGI	GGATG	1 cut(s)	404
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	2 cut(s)	309, 475
BseNI	ACTGG	1 cut(s)	65
BseRI	GAGGAG	1 cut(s)	108
BseXI	GCAGC	2 cut(s)	311, 412
BseYI	CCCAGC	1 cut(s)	105
BshFI	GGCC	2 cut(s)	336, 433
BshVI	ATCGAT	1 cut(s)	373
BsiHKAI	GWGCWC	1 cut(s)	73
BsiSI	CCGG	2 cut(s)	113, 144
BsmAI	GTCTC	2 cut(s)	159, 476
BsnI	GGCC	2 cut(s)	336, 433
Bsp119I	TTCGAA	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp143I	GATC	7 cut(s)	97, 109, 124, 240, 370, 374, 411
Bsp19I	CCATGG	1 cut(s)	276
BspACI	CCGC	1 cut(s)	295
BspANI	GGCC	2 cut(s)	336, 433
BspCNI	CTCAG	2 cut(s)	310, 474
BspDI	ATCGAT	1 cut(s)	373
BspLI	GGNNCC	1 cut(s)	111
BspMAI	CTGCAG	1 cut(s)	430
BspPI	GGATC	3 cut(s)	104, 117, 378
BspT104I	TTCGAA	1 cut(s)	216
BsrDI	GCAATG	1 cut(s)	393
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	2 cut(s)	49, 276
BssMI	GATC	7 cut(s)	97, 109, 124, 240, 370, 374, 411
BssT1I	CCWWGG	2 cut(s)	49, 276
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstBI	TTCGAA	1 cut(s)	216
BstDEI	CTNAG	2 cut(s)	318, 461
BstDSI	CCRYGG	1 cut(s)	276
BstF5I	GGATG	1 cut(s)	404
BstKTI	GATC	7 cut(s)	100, 112, 127, 243, 373, 377, 414
BstMAI	GTCTC	2 cut(s)	159, 476
BstMBI	GATC	7 cut(s)	97, 109, 124, 240, 370, 374, 411
BstMWI	GCNNNNNNNGC	3 cut(s)	267, 333, 425
BstSFI	CTRYAG	1 cut(s)	426
BstV1I	GCAGC	2 cut(s)	311, 412
BstX2I	RGATCY	2 cut(s)	109, 411
BstYI	RGATCY	2 cut(s)	109, 411
Bsu15I	ATCGAT	1 cut(s)	373
BsuRI	GGCC	2 cut(s)	336, 433
BsuTUI	ATCGAT	1 cut(s)	373
BtgI	CCRYGG	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	404
Cfr13I	GGNCC	2 cut(s)	138, 431
ClaI	ATCGAT	1 cut(s)	373
CviAII	CATG	3 cut(s)	83, 179, 277
DdeI	CTNAG	2 cut(s)	318, 461
DpnI	GATC	7 cut(s)	99, 111, 126, 242, 372, 376, 413
DpnII	GATC	7 cut(s)	97, 109, 124, 240, 370, 374, 411
Ecl136II	GAGCTC	1 cut(s)	71
Eco130I	CCWWGG	2 cut(s)	49, 276
Eco24I	GRGCYC	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	138
Eco53kI	GAGCTC	1 cut(s)	71
EcoICRI	GAGCTC	1 cut(s)	71
EcoRI	GAATTC	1 cut(s)	212
EcoT14I	CCWWGG	2 cut(s)	49, 276
EcoT38I	GRGCYC	1 cut(s)	73
ErhI	CCWWGG	2 cut(s)	49, 276
FaeI	CATG	3 cut(s)	86, 182, 280
FaiI	YATR	7 cut(s)	84, 158, 180, 188, 278, 504, 509
FatI	CATG	3 cut(s)	82, 178, 276
Fnu4HI	GCNGC	2 cut(s)	325, 426
FokI	GGATG	1 cut(s)	391
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	2 cut(s)	325, 426
GluI	GCNGC	2 cut(s)	325, 426
GsaI	CCCAGC	1 cut(s)	109
HaeIII	GGCC	2 cut(s)	336, 433
HapII	CCGG	2 cut(s)	113, 144
Hin1II	CATG	3 cut(s)	86, 182, 280
HindIII	AAGCTT	1 cut(s)	151
HinfI	GANTC	2 cut(s)	218, 291
HpaII	CCGG	2 cut(s)	113, 144
Hpy166II	GTNNAC	2 cut(s)	79, 252
Hpy188I	TCNGA	7 cut(s)	68, 92, 124, 164, 240, 245, 409
Hpy188III	TCNNGA	1 cut(s)	368
Hpy8I	GTNNAC	2 cut(s)	79, 252
HpyAV	CCTTC	3 cut(s)	7, 281, 453
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	4 cut(s)	327, 386, 419, 428
HpyF10VI	GCNNNNNNNGC	3 cut(s)	267, 333, 425
HpyF3I	CTNAG	2 cut(s)	318, 461
HpySE526I	ACGT	1 cut(s)	348
Hsp92II	CATG	3 cut(s)	86, 182, 280
Kzo9I	GATC	7 cut(s)	97, 109, 124, 240, 370, 374, 411
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	8 cut(s)	46, 91, 126, 157, 330, 353, 414, 432
Lsp1109I	GCAGC	2 cut(s)	311, 412
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	2 cut(s)	311, 342
MalI	GATC	7 cut(s)	99, 111, 126, 242, 372, 376, 413
MboI	GATC	7 cut(s)	97, 109, 124, 240, 370, 374, 411
MflI	RGATCY	2 cut(s)	109, 411
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	2 cut(s)	118, 212
MlyI	GAGTC	1 cut(s)	285
MmeI	TCCRAC	3 cut(s)	46, 70, 142
MnlI	CCTC	6 cut(s)	47, 86, 151, 202, 347, 372
MslI	CAYNNNNRTG	1 cut(s)	275
MspI	CCGG	2 cut(s)	113, 144
MwoI	GCNNNNNNNGC	3 cut(s)	267, 333, 425
NcoI	CCATGG	1 cut(s)	276
NdeII	GATC	7 cut(s)	97, 109, 124, 240, 370, 374, 411
NlaIII	CATG	3 cut(s)	86, 182, 280
NlaIV	GGNNCC	1 cut(s)	111
NspV	TTCGAA	1 cut(s)	216
PcsI	WCGNNNNNNNCGW	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	2 cut(s)	326, 427
PleI	GAGTC	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	73
PspFI	CCCAGC	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	2 cut(s)	138, 431
PstI	CTGCAG	1 cut(s)	430
PsuI	RGATCY	2 cut(s)	109, 411
RseI	CAYNNNNRTG	1 cut(s)	275
SacI	GAGCTC	1 cut(s)	73
SatI	GCNGC	2 cut(s)	325, 426
Sau3AI	GATC	7 cut(s)	97, 109, 124, 240, 370, 374, 411
Sau96I	GGNCC	2 cut(s)	138, 431
SchI	GAGTC	1 cut(s)	285
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	6 cut(s)	18, 73, 155, 326, 351, 457
SfcI	CTRYAG	1 cut(s)	426
SfuI	TTCGAA	1 cut(s)	216
SinI	GGWCC	1 cut(s)	138
SmiMI	CAYNNNNRTG	1 cut(s)	275
SmlI	CTYRAG	2 cut(s)	72, 338
SmoI	CTYRAG	2 cut(s)	72, 338
Sse9I	AATT	2 cut(s)	118, 212
SsiI	CCGC	1 cut(s)	295
SstI	GAGCTC	1 cut(s)	73
StyI	CCWWGG	2 cut(s)	49, 276
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	2 cut(s)	216, 373
TasI	AATT	2 cut(s)	118, 212
TfiI	GAWTC	1 cut(s)	218
TseI	GCWGC	2 cut(s)	324, 425
TspDTI	ATGAA	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	138
XapI	RAATTY	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.