Rorug04G0391200

Early nodulin-like protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
55868911 .. 55871993
3083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0391200.1

Sequence Viewer

Length: 1308 bp
ATGGTCGAAAATTGTAGTTTACAAAAGAAGGAATTAGATATTTCTCCTCTTCGTTCTCACTTCTGTAAAACTAGTGGTTGCACTGTCAGTAGGTCTCAGATAAACACAGTTGATATCATAGTCCACGAAGCAGCCGATAAACCCCAGTGGGACTTGGCTAGCTTGAAAACGAAGACGCACGTTGGCCTCGTTGCTTTCTCCGCATTATCTGCTTGGAGCTTGAAATGTAATTGGACTTGCTGCGCCCTTGTAGATGCTGATGTTGCTTTGAAAAGAGTCTGGGAAAAAACAAGGGTATTGTTGAAAATGGTGCAAGGTTTGTCACTGAGCACTCTGGCTACGTCGCGTAGCAGTTGTGTTTGTGGATCAATGCCTTCATGGAGGAGGCATTTTAGAGTAATGAGGAAAGACCAGATAAGTAGCGAAAGAAATTTCATGTGGCATCAGTGTGATCATAGCGTATTCGTGAAAGGTAACCCTCATATGTTGAGGCAAAGGAATGTAAGGGTGGAAGCTGGGTGGCTGTTTAAAGGGGGTGATCGGGGGTCGGATGCAATCTCAGAGCGCAGTGAGAGTGCGAATGAGGATATTTTGATATTCTTCTTCCAGCTGGACCTGGCAACTCGAGTCCAGTATGCATTGAACGTGGAAGAGTATGACATTGCACAACAACTGAGAACCAAGCTGGCTGAGGTTGAAGCAGAAGTTGCTAGGCAGCAGGAGGGGAAAAGGGGATCGTCTTCAAAGAGTGAAGCTCAAGATAAGGCTATAAGTCTCATTCGCTTACGGGCAGACCTGCAGGGTGCAATTGAGAGTGAGAATTATGCATTGGCAGCCAAGCTACGGGATGAAATTTCCAAACTGGAGGCAGAGTCATTGGCTATATCAGCCAAAGCTTTGGCACATGAAAATGCAAACTATTCATTTCGTTTGGGACAGAGAGTGAGGCATAAAATTTTTGGCTATAGGGCTGTGGTTTGTGGAATGGATCCAGTGTGCTGTGAATCAAGTTCATGGATGGAAACTGCTCAAGTTGAAAAGTTGTCACGGGGTTCTAATCAGCCATTTTATCAGGTTTTGGTTGATGTTCATGCAGATCCCAACCTTCTGGTGGCTTATGTTGCTGAGGAGAATCTATTGGCCCCTGACAAACCAGACTTGGATCGATTCGATCATCCCTATATTTCCTTCTTATTCTATGGGATGGATGCAGCTGGTGATTTCATCCCTATCAAGCAACTACGCGAGAAGTACAACAGGCCGCGACATGAAATACCACTCGATGAGGAGCCTGGAGGCGATGCTTAG

Protein Analysis

435

Amino Acids

49.08

Weight (kDa)

6.65

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UVR PF02151 259 - 290 4.9e-06 UvrB/uvrC motif
YccV-like PF08755 308 - 404 4.3e-28 Hemimethylated DNA-binding protein YccV like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016777)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g01050
malus_domestica MD05G1357200.v1.1
prunus_persica Prupe.4G011400_v2.0.a1
pyrus_communis pycom10g28040
rosa_chinensis RchiOBHm_Chr5g0001591
rosa_laevigata RLG00000030945
rosa_multiflora Rmu_sc0041139.1_g000001
rosa_roxburghii Rroxscaffold_1G00074730
rosa_rugosa Rorug04G0391200
rosa_samantha Rh5AG012600 Rh5BG015500 Rh5CG013600 Rh5DG013400
rosa_wichuraiana Rw5G001210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 804
AccII CGCG 3 cut(s) 346, 1245, 1264
AciI CCGC 2 cut(s) 201, 1262
AclWI GGATC 6 cut(s) 373, 742, 983, 996, 1091, 1170
AcsI RAATTY 3 cut(s) 430, 852, 954
AfaI GTAC 1 cut(s) 1253
AfiI CCNNNNNNNGG 2 cut(s) 843, 1111
AgsI TTSAA 8 cut(s) 166, 223, 271, 304, 643, 698, 744, 1037
AhlI ACTAGT 1 cut(s) 71
AjnI CCWGG 2 cut(s) 615, 1291
AjuI GAANNNNNNNTTGG 2 cut(s) 812, 844
AluBI AGCT 9 cut(s) 162, 219, 515, 610, 685, 755, 841, 896, 1214
AluI AGCT 9 cut(s) 162, 219, 515, 610, 685, 755, 841, 896, 1214
Alw21I GWGCWC 1 cut(s) 332
Alw26I GTCTC 2 cut(s) 99, 779
AlwI GGATC 6 cut(s) 373, 742, 983, 996, 1091, 1170
Ama87I CYCGRG 1 cut(s) 624
AoxI GGCC 3 cut(s) 184, 1140, 1259
ApeKI GCWGC 5 cut(s) 131, 240, 715, 833, 1211
ApoI RAATTY 3 cut(s) 430, 852, 954
AspLEI GCGC 2 cut(s) 245, 567
AspS9I GGNCC 2 cut(s) 613, 1141
AsuHPI GGTGA 2 cut(s) 548, 1229
AsuNHI GCTAGC 1 cut(s) 158
AvaI CYCGRG 1 cut(s) 624
AvaII GGWCC 1 cut(s) 613
BamHI GGATCC 1 cut(s) 988
BbsI GAAGAC 2 cut(s) 179, 732
Bbv12I GWGCWC 1 cut(s) 332
BbvCI CCTCAGC 2 cut(s) 690, 1125
BbvI GCAGC 5 cut(s) 143, 227, 727, 845, 1223
BccI CCATC 2 cut(s) 1012, 1198
BciT130I CCWGG 2 cut(s) 617, 1293
BclI TGATCA 1 cut(s) 451
BcoDI GTCTC 2 cut(s) 99, 779
BcuI ACTAGT 1 cut(s) 71
BfaI CTAG 3 cut(s) 72, 159, 711
BfmI CTRYAG 2 cut(s) 797, 964
BfuAI ACCTGC 1 cut(s) 804
BisI GCNGC 6 cut(s) 132, 241, 716, 834, 1212, 1262
BlsI GCNGC 6 cut(s) 133, 242, 717, 835, 1213, 1263
Bme1390I CCNGG 2 cut(s) 617, 1293
Bme18I GGWCC 1 cut(s) 613
BmeT110I CYCGRG 1 cut(s) 624
BmgT120I GGNCC 2 cut(s) 613, 1141
BmiI GGNNCC 3 cut(s) 990, 1143, 1290
BmrFI CCNGG 2 cut(s) 617, 1293
BmrI ACTGGG 1 cut(s) 139
BmsI GCATC 5 cut(s) 244, 451, 541, 1198, 1291
BmtI GCTAGC 1 cut(s) 162
BmuI ACTGGG 1 cut(s) 139
BpiI GAAGAC 2 cut(s) 179, 732
BplI GAGNNNNNCTC 2 cut(s) 739, 771
BpmI CTGGAG 1 cut(s) 884
Bpu10I CCTNAGC 2 cut(s) 690, 1125
BpuEI CTTGAG 2 cut(s) 741, 1014
Bsa29I ATCGAT 1 cut(s) 1165
BsaI GGTCTC 1 cut(s) 99
BsaXI ACNNNNNCTCC 2 cut(s) 857, 887
Bsc4I CCNNNNNNNGG 2 cut(s) 843, 1111
Bse1I ACTGG 4 cut(s) 145, 631, 867, 992
Bse3DI GCAATG 1 cut(s) 660
BseBI CCWGG 2 cut(s) 617, 1293
BseCI ATCGAT 1 cut(s) 1165
BseGI GGATG 7 cut(s) 556, 853, 1023, 1174, 1209, 1213, 1224
BseLI CCNNNNNNNGG 2 cut(s) 843, 1111
BseMI GCAATG 1 cut(s) 660
BseMII CTCAG 6 cut(s) 110, 317, 573, 665, 681, 1116
BseNI ACTGG 4 cut(s) 145, 631, 867, 992
BseRI GAGGAG 4 cut(s) 36, 397, 1142, 1301
BseXI GCAGC 5 cut(s) 143, 227, 727, 845, 1223
BseYI CCCAGC 1 cut(s) 515
Bsh1236I CGCG 3 cut(s) 346, 1245, 1264
BshFI GGCC 3 cut(s) 186, 1142, 1261
BshVI ATCGAT 1 cut(s) 1165
BsiHKAI GWGCWC 1 cut(s) 332
BsiHKCI CYCGRG 1 cut(s) 624
BslFI GGGAC 2 cut(s) 164, 948
BslI CCNNNNNNNGG 2 cut(s) 843, 1111
BsmAI GTCTC 2 cut(s) 99, 779
BsmFI GGGAC 2 cut(s) 164, 948
BsnI GGCC 3 cut(s) 186, 1142, 1261
Bso31I GGTCTC 1 cut(s) 99
BsoBI CYCGRG 1 cut(s) 624
Bsp1286I GDGCHC 1 cut(s) 332
Bsp143I GATC 8 cut(s) 365, 451, 538, 734, 988, 1096, 1162, 1171
BspACI CCGC 2 cut(s) 201, 1262
BspANI GGCC 3 cut(s) 186, 1142, 1261
BspCNI CTCAG 6 cut(s) 109, 318, 572, 666, 682, 1117
BspDI ATCGAT 1 cut(s) 1165
BspFNI CGCG 3 cut(s) 346, 1245, 1264
BspLI GGNNCC 3 cut(s) 990, 1143, 1290
BspMAI CTGCAG 1 cut(s) 801
BspMI ACCTGC 1 cut(s) 804
BspOI GCTAGC 1 cut(s) 162
BspPI GGATC 6 cut(s) 373, 742, 983, 996, 1091, 1170
BspTNI GGTCTC 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 660
BsrI ACTGG 4 cut(s) 145, 631, 867, 992
BssMI GATC 8 cut(s) 365, 451, 538, 734, 988, 1096, 1162, 1171
Bst2UI CCWGG 2 cut(s) 617, 1293
Bst4CI ACNGT 2 cut(s) 85, 109
Bst6I CTCTTC 2 cut(s) 54, 645
BstAPI GCANNNNNTGC 2 cut(s) 209, 707
BstC8I GCNNGC 2 cut(s) 160, 687
BstDEI CTNAG 7 cut(s) 96, 326, 559, 674, 690, 1125, 1305
BstEII GGTNACC 1 cut(s) 473
BstF5I GGATG 7 cut(s) 556, 853, 1023, 1174, 1209, 1213, 1224
BstFNI CGCG 3 cut(s) 346, 1245, 1264
BstHHI GCGC 2 cut(s) 245, 567
BstKTI GATC 8 cut(s) 368, 454, 541, 737, 991, 1099, 1165, 1174
BstMAI GTCTC 2 cut(s) 99, 779
BstMBI GATC 8 cut(s) 365, 451, 538, 734, 988, 1096, 1162, 1171
BstMWI GCNNNNNNNGC 7 cut(s) 200, 209, 263, 707, 833, 887, 1121
BstNI CCWGG 2 cut(s) 617, 1293
BstPI GGTNACC 1 cut(s) 473
BstSCI CCNGG 2 cut(s) 615, 1291
BstSFI CTRYAG 2 cut(s) 797, 964
BstUI CGCG 3 cut(s) 346, 1245, 1264
BstV1I GCAGC 5 cut(s) 143, 227, 727, 845, 1223
BstV2I GAAGAC 2 cut(s) 179, 732
BstX2I RGATCY 2 cut(s) 988, 1096
BstXI CCANNNNNNTGG 2 cut(s) 898, 1108
BstYI RGATCY 2 cut(s) 988, 1096
Bsu15I ATCGAT 1 cut(s) 1165
BsuRI GGCC 3 cut(s) 186, 1142, 1261
BsuTUI ATCGAT 1 cut(s) 1165
BtsCI GGATG 7 cut(s) 556, 853, 1023, 1174, 1209, 1213, 1224
BtsI GCAGTG 1 cut(s) 574
BtsIMutI CAGTG 6 cut(s) 81, 152, 323, 452, 574, 999
BveI ACCTGC 1 cut(s) 804
Cac8I GCNNGC 2 cut(s) 160, 687
CfoI GCGC 2 cut(s) 245, 567
Cfr13I GGNCC 2 cut(s) 613, 1141
ClaI ATCGAT 1 cut(s) 1165
CseI GACGC 1 cut(s) 184
Csp6I GTAC 1 cut(s) 1252
CviAII CATG 6 cut(s) 378, 436, 905, 1014, 1091, 1268
CviQI GTAC 1 cut(s) 1252
DdeI CTNAG 7 cut(s) 96, 326, 559, 674, 690, 1125, 1305
DpnI GATC 8 cut(s) 367, 453, 540, 736, 990, 1098, 1164, 1173
DpnII GATC 8 cut(s) 365, 451, 538, 734, 988, 1096, 1162, 1171
DraI TTTAAA 1 cut(s) 529
Eam1104I CTCTTC 2 cut(s) 54, 645
EarI CTCTTC 2 cut(s) 54, 645
Eco31I GGTCTC 1 cut(s) 99
Eco32I GATATC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 613
Eco88I CYCGRG 1 cut(s) 624
Eco91I GGTNACC 1 cut(s) 473
EcoO65I GGTNACC 1 cut(s) 473
EcoRII CCWGG 2 cut(s) 615, 1291
EcoRV GATATC 1 cut(s) 115
EcoT22I ATGCAT 2 cut(s) 640, 829
FaeI CATG 6 cut(s) 381, 439, 908, 1017, 1094, 1271
FaqI GGGAC 2 cut(s) 164, 948
FatI CATG 6 cut(s) 377, 435, 904, 1013, 1090, 1267
FauNDI CATATG 1 cut(s) 483
FbaI TGATCA 1 cut(s) 451
Fnu4HI GCNGC 6 cut(s) 132, 241, 716, 834, 1212, 1262
FokI GGATG 7 cut(s) 563, 860, 1030, 1161, 1211, 1216, 1220
Fsp4HI GCNGC 6 cut(s) 132, 241, 716, 834, 1212, 1262
FspBI CTAG 3 cut(s) 72, 159, 711
GlaI GCGC 2 cut(s) 244, 566
GluI GCNGC 6 cut(s) 132, 241, 716, 834, 1212, 1262
GsaI CCCAGC 1 cut(s) 519
GsuI CTGGAG 1 cut(s) 884
HaeIII GGCC 3 cut(s) 186, 1142, 1261
HgaI GACGC 1 cut(s) 184
HhaI GCGC 2 cut(s) 245, 567
Hin1II CATG 6 cut(s) 381, 439, 908, 1017, 1094, 1271
Hin6I GCGC 2 cut(s) 243, 565
HinP1I GCGC 2 cut(s) 243, 565
HindIII AAGCTT 1 cut(s) 894
HinfI GANTC 6 cut(s) 276, 627, 872, 1004, 1132, 1167
HphI GGTGA 2 cut(s) 548, 1229
Hpy166II GTNNAC 2 cut(s) 20, 124
Hpy188I TCNGA 3 cut(s) 99, 550, 562
Hpy188III TCNNGA 2 cut(s) 466, 758
Hpy8I GTNNAC 2 cut(s) 20, 124
Hpy99I CGWCG 1 cut(s) 346
HpyAV CCTTC 4 cut(s) 22, 384, 1115, 1198
HpyCH4III ACNGT 2 cut(s) 85, 109
HpyCH4IV ACGT 3 cut(s) 180, 341, 645
HpyF10VI GCNNNNNNNGC 7 cut(s) 200, 209, 263, 707, 833, 887, 1121
HpyF3I CTNAG 7 cut(s) 96, 326, 559, 674, 690, 1125, 1305
HpySE526I ACGT 3 cut(s) 180, 341, 645
Hsp92II CATG 6 cut(s) 381, 439, 908, 1017, 1094, 1271
HspAI GCGC 2 cut(s) 243, 565
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 8 cut(s) 365, 451, 538, 734, 988, 1096, 1162, 1171
LmnI GCTCC 2 cut(s) 216, 1288
Lsp1109I GCAGC 5 cut(s) 143, 227, 727, 845, 1223
LweI GCATC 5 cut(s) 244, 451, 541, 1198, 1291
MaeI CTAG 3 cut(s) 72, 159, 711
MaeII ACGT 3 cut(s) 180, 341, 645
MaeIII GTNAC 3 cut(s) 321, 473, 1044
MalI GATC 8 cut(s) 367, 453, 540, 736, 990, 1098, 1164, 1173
MboI GATC 8 cut(s) 365, 451, 538, 734, 988, 1096, 1162, 1171
MboII GAAGA 6 cut(s) 41, 184, 592, 595, 662, 732
MfeI CAATTG 1 cut(s) 807
MflI RGATCY 2 cut(s) 988, 1096
MhlI GDGCHC 1 cut(s) 332
MluCI AATT 8 cut(s) 10, 32, 229, 430, 807, 820, 852, 954
MlyI GAGTC 3 cut(s) 285, 636, 881
MmeI TCCRAC 1 cut(s) 528
Mph1103I ATGCAT 2 cut(s) 640, 829
MseI TTAA 1 cut(s) 528
MslI CAYNNNNRTG 2 cut(s) 447, 909
MspA1I CMGCKG 2 cut(s) 610, 1214
MspR9I CCNGG 2 cut(s) 617, 1293
MunI CAATTG 1 cut(s) 807
MvaI CCWGG 2 cut(s) 617, 1293
MvnI CGCG 3 cut(s) 346, 1245, 1264
MwoI GCNNNNNNNGC 7 cut(s) 200, 209, 263, 707, 833, 887, 1121
NdeI CATATG 1 cut(s) 483
NdeII GATC 8 cut(s) 365, 451, 538, 734, 988, 1096, 1162, 1171
NheI GCTAGC 1 cut(s) 158
NlaIII CATG 6 cut(s) 381, 439, 908, 1017, 1094, 1271
NlaIV GGNNCC 3 cut(s) 990, 1143, 1290
NmuCI GTSAC 2 cut(s) 321, 1044
NsiI ATGCAT 2 cut(s) 640, 829
PaeR7I CTCGAG 1 cut(s) 624
PcsI WCGNNNNNNNCGW 2 cut(s) 132, 186
PfeI GAWTC 3 cut(s) 1004, 1132, 1167
PkrI GCNGC 6 cut(s) 133, 242, 717, 835, 1213, 1263
PleI GAGTC 3 cut(s) 284, 635, 880
PpsI GAGTC 3 cut(s) 284, 635, 880
Psp6I CCWGG 2 cut(s) 615, 1291
PspEI GGTNACC 1 cut(s) 473
PspFI CCCAGC 1 cut(s) 515
PspGI CCWGG 2 cut(s) 615, 1291
PspN4I GGNNCC 3 cut(s) 990, 1143, 1290
PspPI GGNCC 2 cut(s) 613, 1141
PspXI VCTCGAGB 1 cut(s) 624
PstI CTGCAG 1 cut(s) 801
PsuI RGATCY 2 cut(s) 988, 1096
PvuII CAGCTG 2 cut(s) 610, 1214
RsaI GTAC 1 cut(s) 1253
RsaNI GTAC 1 cut(s) 1252
RseI CAYNNNNRTG 2 cut(s) 447, 909
SaqAI TTAA 1 cut(s) 528
SatI GCNGC 6 cut(s) 132, 241, 716, 834, 1212, 1262
Sau3AI GATC 8 cut(s) 365, 451, 538, 734, 988, 1096, 1162, 1171
Sau96I GGNCC 2 cut(s) 613, 1141
SbfI CCTGCAGG 1 cut(s) 801
SchI GAGTC 3 cut(s) 285, 636, 881
ScrFI CCNGG 2 cut(s) 617, 1293
SdaI CCTGCAGG 1 cut(s) 801
SduI GDGCHC 1 cut(s) 332
SfaNI GCATC 5 cut(s) 244, 451, 541, 1198, 1291
SfcI CTRYAG 2 cut(s) 797, 964
Sfr274I CTCGAG 1 cut(s) 624
SinI GGWCC 1 cut(s) 613
SlaI CTCGAG 1 cut(s) 624
SmiMI CAYNNNNRTG 2 cut(s) 447, 909
SmlI CTYRAG 3 cut(s) 624, 756, 1029
SmoI CTYRAG 3 cut(s) 624, 756, 1029
SpeI ACTAGT 1 cut(s) 71
Sse8387I CCTGCAGG 1 cut(s) 801
Sse9I AATT 8 cut(s) 10, 32, 229, 430, 807, 820, 852, 954
SsiI CCGC 2 cut(s) 201, 1262
SspMI CTAG 3 cut(s) 72, 159, 711
StyD4I CCNGG 2 cut(s) 615, 1291
TaaI ACNGT 2 cut(s) 85, 109
TaiI ACGT 3 cut(s) 183, 344, 648
TaqI TCGA 5 cut(s) 6, 625, 1165, 1170, 1281
TasI AATT 8 cut(s) 10, 32, 229, 430, 807, 820, 852, 954
TatI WGTACW 1 cut(s) 1251
TauI GCSGC 1 cut(s) 1264
TfiI GAWTC 3 cut(s) 1004, 1132, 1167
Tru1I TTAA 1 cut(s) 528
Tru9I TTAA 1 cut(s) 528
TscAI CASTG 6 cut(s) 88, 152, 330, 452, 574, 999
TseFI GTSAC 2 cut(s) 321, 1044
TseI GCWGC 5 cut(s) 131, 240, 715, 833, 1211
Tsp45I GTSAC 2 cut(s) 321, 1044
TspDTI ATGAA 9 cut(s) 366, 424, 864, 912, 921, 1002, 1079, 1213, 1284
TspRI CASTG 6 cut(s) 88, 152, 330, 452, 574, 999
VpaK11BI GGWCC 1 cut(s) 613
XapI RAATTY 3 cut(s) 430, 852, 954
XcmI CCANNNNNNNNNTGG 1 cut(s) 1108
XhoI CTCGAG 1 cut(s) 624
XspI CTAG 3 cut(s) 72, 159, 711
Zsp2I ATGCAT 2 cut(s) 640, 829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.