Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016777

Physical Location & Seq

Genomic Coordinates Reverse (-)

846359 .. 847386

Gene Structure 1028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28301

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGCTGGATTGAAGGTGGTGTTTGTTGTTTTGGCCATCAGTTTCAGCCTTGGAGGGAACTGGGTCGGAGCTCAAGTCCACCATGTCGTCGGAGGAGATCGTGGCTGGGATCCTGCTAATTCCGATCTCACGTCCTGGTCCTCCGGCAAAAGCTTTATGGTCGGAGACACACTCTGTGAGGTTTGCATACTCTGCAGCACATGGGTTCATAGCAGAAGTGAAAAGCAAGGAGGAATTCGAATCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009536 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

82

Amino Acids

8.76

Weight (kDa)

6.8

Isoelectric Point (pI)

20.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016777)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g01050
malus_domestica	MD05G1357200.v1.1
prunus_persica	Prupe.4G011400_v2.0.a1
pyrus_communis	pycom10g28040
rosa_chinensis	RchiOBHm_Chr5g0001591
rosa_laevigata	RLG00000030945
rosa_multiflora	Rmu_sc0041139.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074730
rosa_rugosa	Rorug04G0391200
rosa_samantha	Rh5AG012600 Rh5BG015500 Rh5CG013600 Rh5DG013400
rosa_wichuraiana	Rw5G001210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	104, 117
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	234
AdeI	CACNNNGTG	1 cut(s)	176
AgsI	TTSAA	1 cut(s)	13
AjiI	CACGTC	1 cut(s)	132
AjnI	CCWGG	1 cut(s)	134
AluBI	AGCT	2 cut(s)	71, 153
AluI	AGCT	2 cut(s)	71, 153
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	1 cut(s)	159
AlwI	GGATC	2 cut(s)	104, 117
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	195
ApoI	RAATTY	1 cut(s)	234
AspS9I	GGNCC	1 cut(s)	138
AsuII	TTCGAA	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	138
BalI	TGGCCA	1 cut(s)	35
BamHI	GGATCC	1 cut(s)	109
BanII	GRGCYC	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	159
BfmI	CTRYAG	1 cut(s)	193
BisI	GCNGC	1 cut(s)	196
BlsI	GCNGC	1 cut(s)	197
Bme1390I	CCNGG	1 cut(s)	136
Bme18I	GGWCC	1 cut(s)	138
BmgBI	CACGTC	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	138
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	136
BmrI	ACTGGG	1 cut(s)	70
BmuI	ACTGGG	1 cut(s)	70
BplI	GAGNNNNNCTC	2 cut(s)	156, 188
Bpu14I	TTCGAA	1 cut(s)	238
BpuEI	CTTGAG	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	49
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bse1I	ACTGG	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	49
BseNI	ACTGG	1 cut(s)	65
BseRI	GAGGAG	1 cut(s)	108
BseXI	GCAGC	1 cut(s)	207
BseYI	CCCAGC	1 cut(s)	105
BshFI	GGCC	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	73
BsiSI	CCGG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	159
BsnI	GGCC	1 cut(s)	35
Bsp119I	TTCGAA	1 cut(s)	238
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp143I	GATC	3 cut(s)	97, 109, 124
BspANI	GGCC	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	111
BspMAI	CTGCAG	1 cut(s)	197
BspPI	GGATC	2 cut(s)	104, 117
BspT104I	TTCGAA	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	3 cut(s)	97, 109, 124
BssT1I	CCWWGG	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	136
BstAPI	GCANNNNNTGC	1 cut(s)	192
BstBI	TTCGAA	1 cut(s)	238
BstKTI	GATC	3 cut(s)	100, 112, 127
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	3 cut(s)	97, 109, 124
BstMWI	GCNNNNNNNGC	1 cut(s)	192
BstNI	CCWGG	1 cut(s)	136
BstSCI	CCNGG	1 cut(s)	134
BstSFI	CTRYAG	1 cut(s)	193
BstV1I	GCAGC	1 cut(s)	207
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	35
BtrI	CACGTC	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	138
CviAII	CATG	2 cut(s)	83, 201
CviJI	RGCY	6 cut(s)	5, 35, 48, 71, 105, 153
CviKI_1	RGCY	6 cut(s)	5, 35, 48, 71, 105, 153
DpnI	GATC	3 cut(s)	99, 111, 126
DpnII	GATC	3 cut(s)	97, 109, 124
DraIII	CACNNNGTG	1 cut(s)	176
EaeI	YGGCCR	1 cut(s)	33
Ecl136II	GAGCTC	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	138
Eco53kI	GAGCTC	1 cut(s)	71
EcoICRI	GAGCTC	1 cut(s)	71
EcoRI	GAATTC	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	134
EcoT14I	CCWWGG	1 cut(s)	49
EcoT38I	GRGCYC	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	49
FaeI	CATG	2 cut(s)	86, 204
FaiI	YATR	5 cut(s)	84, 158, 188, 202, 210
FatI	CATG	2 cut(s)	82, 200
Fnu4HI	GCNGC	1 cut(s)	196
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	1 cut(s)	196
GluI	GCNGC	1 cut(s)	196
GsaI	CCCAGC	1 cut(s)	109
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	1 cut(s)	144
Hin1II	CATG	2 cut(s)	86, 204
HindIII	AAGCTT	1 cut(s)	151
HinfI	GANTC	1 cut(s)	240
HpaII	CCGG	1 cut(s)	144
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	4 cut(s)	68, 92, 124, 164
Hpy8I	GTNNAC	1 cut(s)	79
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	1 cut(s)	7
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	2 cut(s)	186, 195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	192
HpySE526I	ACGT	1 cut(s)	131
Hsp92II	CATG	2 cut(s)	86, 204
Kzo9I	GATC	3 cut(s)	97, 109, 124
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	6 cut(s)	46, 91, 121, 126, 148, 157
Lsp1109I	GCAGC	1 cut(s)	207
MaeII	ACGT	1 cut(s)	131
MalI	GATC	3 cut(s)	99, 111, 126
MboI	GATC	3 cut(s)	97, 109, 124
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	73
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	2 cut(s)	118, 234
MluNI	TGGCCA	1 cut(s)	35
MmeI	TCCRAC	3 cut(s)	46, 70, 142
MnlI	CCTC	5 cut(s)	47, 86, 151, 172, 224
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
Msp20I	TGGCCA	1 cut(s)	35
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	136
MwoI	GCNNNNNNNGC	1 cut(s)	192
NdeII	GATC	3 cut(s)	97, 109, 124
NlaIII	CATG	2 cut(s)	86, 204
NlaIV	GGNNCC	1 cut(s)	111
NspV	TTCGAA	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	240
PkrI	GCNGC	1 cut(s)	197
Psp124BI	GAGCTC	1 cut(s)	73
Psp6I	CCWGG	1 cut(s)	134
PspFI	CCCAGC	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	138
PstI	CTGCAG	1 cut(s)	197
PsuI	RGATCY	1 cut(s)	109
SacI	GAGCTC	1 cut(s)	73
SatI	GCNGC	1 cut(s)	196
Sau3AI	GATC	3 cut(s)	97, 109, 124
Sau96I	GGNCC	1 cut(s)	138
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	5 cut(s)	18, 73, 134, 155, 183
SfcI	CTRYAG	1 cut(s)	193
SfuI	TTCGAA	1 cut(s)	238
SinI	GGWCC	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
Sse9I	AATT	2 cut(s)	118, 234
SstI	GAGCTC	1 cut(s)	73
StyD4I	CCNGG	1 cut(s)	134
StyI	CCWWGG	1 cut(s)	49
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	1 cut(s)	238
TasI	AATT	2 cut(s)	118, 234
TfiI	GAWTC	1 cut(s)	240
TseI	GCWGC	1 cut(s)	195
TspDTI	ATGAA	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	138
XapI	RAATTY	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.