Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0011538

Physical Location & Seq

Genomic Coordinates Forward (+)

2894702 .. 2896660

Gene Structure 1959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G060800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGACGATAGTAGAGCTCATAGTGCCCATGGATTGTGCTGGCTGCGAGACCAAGATAAGGAAAGCTCTGAAAAAGCTGAAAGGAGTGGATGCTATTGATGTAGACGTCGACATGCAGAAGGTGACTGTAATGGGATGGGCTGACCAAAAAAAAGTGTTGAAGGCAGTTAGGAAGACTGGAAAGAGAGCTGAGCTTTGGCCTTACCCTTACAATCCACAATACCACAACGTCAATAATCTCCAATACTACCGTCAACATCAGCCACACGATCATCATCATGATCATCACCATCATGGCTACAAGAAGCAAGCACCCTTCATCACCTATAACTCAATACCTAATTCATCCTACTCCTACAACTACTACAAGCATGGCTCCACAAGTCATGAGCATGGCTACTATCAACCTCCTCCTTACTCCACCATTTTTAGTGAGCAGGACACTGCTGCGTTCAGTGACGATAACCCTCATGCTTGCTCCATAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

163

Amino Acids

18.83

Weight (kDa)

8.33

Isoelectric Point (pI)

22.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07830 FvH4_3g07830
malus_domestica	MD05G1301600.v1.1 MD10G1280500.v1.1
prunus_persica	Prupe.4G060800_v2.0.a1 Prupe.4G060800_v2.0.a1
pyrus_communis	pycom05g27940 pycom10g23430
rosa_chinensis	RchiOBHm_Chr5g0010741
rosa_laevigata	RLG00000031775
rosa_multiflora	Rmu_co8000780.1_g000001 Rmu_sc0000109.1_g000025
rosa_roxburghii	Rroxscaffold_1G00065640
rosa_rugosa	Rorug04G0451900
rosa_samantha	Rh5AG083700 Rh5BG078900 Rh5CG091700 Rh5DG079100
rosa_wichuraiana	Rw0G000610 Rw0G022310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	108
AccI	GTMKAC	2 cut(s)	102, 108
AcyI	GRCGYC	1 cut(s)	105
AfiI	CCNNNNNNNGG	1 cut(s)	57
AgsI	TTSAA	1 cut(s)	160
AluBI	AGCT	5 cut(s)	16, 65, 76, 188, 193
AluI	AGCT	5 cut(s)	16, 65, 76, 188, 193
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	1 cut(s)	41
AoxI	GGCC	1 cut(s)	197
ApeKI	GCWGC	2 cut(s)	42, 446
AsuHPI	GGTGA	3 cut(s)	133, 278, 313
BaeGI	GKGCMC	1 cut(s)	27
BanII	GRGCYC	1 cut(s)	18
BbsI	GAAGAC	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	2 cut(s)	29, 433
BccI	CCATC	2 cut(s)	129, 297
BclI	TGATCA	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	41
BisI	GCNGC	2 cut(s)	43, 447
BlpI	GCTNAGC	1 cut(s)	189
BlsI	GCNGC	2 cut(s)	44, 448
BmiI	GGNNCC	1 cut(s)	376
BmsI	GCATC	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	179
Bpu1102I	GCTNAGC	1 cut(s)	189
BsaBI	GATNNNNATC	1 cut(s)	273
BsaHI	GRCGYC	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
Bse1I	ACTGG	1 cut(s)	181
Bse8I	GATNNNNATC	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	3 cut(s)	94, 140, 344
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	181
BseRI	GAGGAG	1 cut(s)	399
BseSI	GKGCMC	1 cut(s)	27
BseXI	GCAGC	2 cut(s)	29, 433
BshFI	GGCC	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	57
BsmAI	GTCTC	1 cut(s)	41
BsnI	GGCC	1 cut(s)	199
Bso31I	GGTCTC	1 cut(s)	41
Bsp1286I	GDGCHC	2 cut(s)	18, 27
Bsp143I	GATC	2 cut(s)	268, 280
Bsp1720I	GCTNAGC	1 cut(s)	189
Bsp19I	CCATGG	1 cut(s)	27
BspANI	GGCC	1 cut(s)	199
BspCNI	CTCAG	1 cut(s)	181
BspHI	TCATGA	2 cut(s)	277, 385
BspLI	GGNNCC	1 cut(s)	376
BspTNI	GGTCTC	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	181
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	2 cut(s)	268, 280
BssNI	GRCGYC	1 cut(s)	105
BssT1I	CCWWGG	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	127, 251
BstACI	GRCGYC	1 cut(s)	105
BstC8I	GCNNGC	3 cut(s)	40, 309, 475
BstDEI	CTNAG	1 cut(s)	189
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	3 cut(s)	94, 140, 344
BstKTI	GATC	2 cut(s)	271, 283
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	2 cut(s)	268, 280
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstNSI	RCATGY	1 cut(s)	115
BstSLI	GKGCMC	1 cut(s)	27
BstV1I	GCAGC	2 cut(s)	29, 433
BstV2I	GAAGAC	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	199
BtgI	CCRYGG	1 cut(s)	27
BtsCI	GGATG	3 cut(s)	94, 140, 344
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	2 cut(s)	441, 460
Cac8I	GCNNGC	3 cut(s)	40, 309, 475
CciI	TCATGA	2 cut(s)	277, 385
CviAII	CATG	8 cut(s)	28, 112, 278, 293, 371, 386, 392, 470
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	2 cut(s)	270, 282
DpnII	GATC	2 cut(s)	268, 280
Ecl136II	GAGCTC	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	18
Eco31I	GGTCTC	1 cut(s)	41
Eco53kI	GAGCTC	1 cut(s)	16
EcoICRI	GAGCTC	1 cut(s)	16
EcoT14I	CCWWGG	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	8 cut(s)	31, 115, 281, 296, 374, 389, 395, 473
FatI	CATG	8 cut(s)	27, 111, 277, 292, 370, 385, 391, 469
FbaI	TGATCA	1 cut(s)	280
FblI	GTMKAC	2 cut(s)	102, 108
Fnu4HI	GCNGC	2 cut(s)	43, 447
FokI	GGATG	3 cut(s)	101, 147, 331
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	2 cut(s)	43, 447
GluI	GCNGC	2 cut(s)	43, 447
HaeIII	GGCC	1 cut(s)	199
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	8 cut(s)	31, 115, 281, 296, 374, 389, 395, 473
HincII	GTYRAC	2 cut(s)	109, 254
HindII	GTYRAC	2 cut(s)	109, 254
HphI	GGTGA	3 cut(s)	133, 278, 313
Hpy166II	GTNNAC	3 cut(s)	103, 109, 254
Hpy188I	TCNGA	1 cut(s)	69
Hpy188III	TCNNGA	2 cut(s)	278, 386
Hpy8I	GTNNAC	3 cut(s)	103, 109, 254
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	3 cut(s)	112, 154, 325
HpyCH4III	ACNGT	2 cut(s)	127, 251
HpyCH4IV	ACGT	2 cut(s)	105, 228
HpyCH4V	TGCA	1 cut(s)	115
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	2 cut(s)	105, 228
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	8 cut(s)	31, 115, 281, 296, 374, 389, 395, 473
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	2 cut(s)	268, 280
LmnI	GCTCC	2 cut(s)	380, 482
LpnPI	CCDG	3 cut(s)	24, 162, 422
Lsp1109I	GCAGC	2 cut(s)	29, 433
LweI	GCATC	1 cut(s)	79
MaeII	ACGT	2 cut(s)	105, 228
MaeIII	GTNAC	2 cut(s)	121, 455
MalI	GATC	2 cut(s)	270, 282
MboI	GATC	2 cut(s)	268, 280
MboII	GAAGA	1 cut(s)	184
MhlI	GDGCHC	2 cut(s)	18, 27
MluCI	AATT	1 cut(s)	340
MnlI	CCTC	3 cut(s)	417, 420, 477
MslI	CAYNNNNRTG	3 cut(s)	276, 291, 390
MwoI	GCNNNNNNNGC	1 cut(s)	22
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	2 cut(s)	268, 280
NlaIII	CATG	8 cut(s)	31, 115, 281, 296, 374, 389, 395, 473
NlaIV	GGNNCC	1 cut(s)	376
NmuCI	GTSAC	2 cut(s)	121, 455
NspI	RCATGY	1 cut(s)	115
PagI	TCATGA	2 cut(s)	277, 385
PkrI	GCNGC	2 cut(s)	44, 448
Psp124BI	GAGCTC	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	376
RseI	CAYNNNNRTG	3 cut(s)	276, 291, 390
SacI	GAGCTC	1 cut(s)	18
SalI	GTCGAC	1 cut(s)	107
SatI	GCNGC	2 cut(s)	43, 447
Sau3AI	GATC	2 cut(s)	268, 280
SduI	GDGCHC	2 cut(s)	18, 27
SfaNI	GCATC	1 cut(s)	79
SmiMI	CAYNNNNRTG	3 cut(s)	276, 291, 390
Sse9I	AATT	1 cut(s)	340
SstI	GAGCTC	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	2 cut(s)	127, 251
TaiI	ACGT	2 cut(s)	108, 231
TaqI	TCGA	1 cut(s)	108
TasI	AATT	1 cut(s)	340
TscAI	CASTG	2 cut(s)	448, 460
TseFI	GTSAC	2 cut(s)	121, 455
TseI	GCWGC	2 cut(s)	42, 446
Tsp45I	GTSAC	2 cut(s)	121, 455
TspDTI	ATGAA	2 cut(s)	307, 333
TspRI	CASTG	2 cut(s)	448, 460
XceI	RCATGY	1 cut(s)	115
XmiI	GTMKAC	2 cut(s)	102, 108
ZraI	GACGTC	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.