Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000109.1

Orthogroup ID

OG0011538

Physical Location & Seq

Genomic Coordinates Reverse (-)

121477 .. 122815

Gene Structure 1339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000109.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgacgattgtagagatgcaagtgcacatggactgttctggctgtgagaacaagataaagaaagctctcaaaaagcttaaaggagtagacgatattgacgtggatataaacatgcagaaggtgactgtcatgggatgggctaaacaagagaaagttttaagggcagtgaggaggactggaaggacagctgagctttggccttacccttacaaccctgaatatggacacaactttaatgttcagtactaccagcagcatcaaccccgcgatggccgcgaacatcaccaccaccgccaccatcatgatcatcaaagtaaacacaagatcaccacctacaattcgattcccaattactcgtcttattcgtacaattactacaagcatggctacagtggcaaggagcatggctattatcagcctcctccttactccaccatgtttaatgagcaggacactgctgtgttcagtgatgaaaaccctcatgcctgttccattatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

166

Amino Acids

19.67

Weight (kDa)

8.33

Isoelectric Point (pI)

25.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07830 FvH4_3g07830
malus_domestica	MD05G1301600.v1.1 MD10G1280500.v1.1
prunus_persica	Prupe.4G060800_v2.0.a1 Prupe.4G060800_v2.0.a1
pyrus_communis	pycom05g27940 pycom10g23430
rosa_chinensis	RchiOBHm_Chr5g0010741
rosa_laevigata	RLG00000031775
rosa_multiflora	Rmu_co8000780.1_g000001 Rmu_sc0000109.1_g000025
rosa_roxburghii	Rroxscaffold_1G00065640
rosa_rugosa	Rorug04G0451900
rosa_samantha	Rh5AG083700 Rh5BG078900 Rh5CG091700 Rh5DG079100
rosa_wichuraiana	Rw0G000610 Rw0G022310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	87
AccII	CGCG	2 cut(s)	267, 276
AciI	CCGC	3 cut(s)	265, 274, 292
AcoI	YGGCCR	1 cut(s)	271
AfaI	GTAC	2 cut(s)	245, 368
AfiI	CCNNNNNNNGG	2 cut(s)	221, 269
AjiI	CACGTC	1 cut(s)	100
AleI	CACNNNNGTG	1 cut(s)	458
AluBI	AGCT	4 cut(s)	65, 76, 188, 193
AluI	AGCT	4 cut(s)	65, 76, 188, 193
Alw21I	GWGCWC	1 cut(s)	27
Alw44I	GTGCAC	1 cut(s)	23
AoxI	GGCC	2 cut(s)	197, 271
ApaLI	GTGCAC	1 cut(s)	23
ApeKI	GCWGC	1 cut(s)	253
AsuHPI	GGTGA	3 cut(s)	133, 275, 319
BaeGI	GKGCMC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	3 cut(s)	129, 263, 306
BclI	TGATCA	1 cut(s)	304
BfmI	CTRYAG	1 cut(s)	388
BisI	GCNGC	2 cut(s)	254, 274
BlpI	GCTNAGC	1 cut(s)	189
BlsI	GCNGC	2 cut(s)	255, 275
BmcAI	AGTACT	1 cut(s)	245
BmgBI	CACGTC	1 cut(s)	100
BmsI	GCATC	2 cut(s)	6, 265
Bpu1102I	GCTNAGC	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 269
Bse1I	ACTGG	1 cut(s)	181
BseGI	GGATG	1 cut(s)	140
BseLI	CCNNNNNNNGG	2 cut(s)	221, 269
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	181
BseRI	GAGGAG	2 cut(s)	184, 411
BseSI	GKGCMC	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	265
Bsh1236I	CGCG	2 cut(s)	267, 276
BshFI	GGCC	2 cut(s)	199, 273
BsiHKAI	GWGCWC	1 cut(s)	27
BslI	CCNNNNNNNGG	2 cut(s)	221, 269
BsnI	GGCC	2 cut(s)	199, 273
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	304, 324
Bsp1720I	GCTNAGC	1 cut(s)	189
BspACI	CCGC	3 cut(s)	265, 274, 292
BspANI	GGCC	2 cut(s)	199, 273
BspCNI	CTCAG	1 cut(s)	181
BspFNI	CGCG	2 cut(s)	267, 276
BspHI	TCATGA	1 cut(s)	301
BsrI	ACTGG	1 cut(s)	181
BssMI	GATC	2 cut(s)	304, 324
Bst4CI	ACNGT	3 cut(s)	35, 127, 392
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	140
BstFNI	CGCG	2 cut(s)	267, 276
BstKTI	GATC	2 cut(s)	307, 327
BstMBI	GATC	2 cut(s)	304, 324
BstMWI	GCNNNNNNNGC	2 cut(s)	273, 393
BstNSI	RCATGY	1 cut(s)	115
BstSFI	CTRYAG	1 cut(s)	388
BstSLI	GKGCMC	1 cut(s)	27
BstUI	CGCG	2 cut(s)	267, 276
BstV1I	GCAGC	1 cut(s)	265
BsuRI	GGCC	2 cut(s)	199, 273
BtgZI	GCGATG	1 cut(s)	282
BtrI	CACGTC	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	140
BtsI	GCAGTG	2 cut(s)	171, 453
BtsIMutI	CAGTG	4 cut(s)	171, 397, 453, 472
CciI	TCATGA	1 cut(s)	301
Csp6I	GTAC	2 cut(s)	244, 367
CviAII	CATG	8 cut(s)	28, 112, 130, 302, 383, 404, 436, 482
CviQI	GTAC	2 cut(s)	244, 367
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	2 cut(s)	306, 326
DpnII	GATC	2 cut(s)	304, 324
EaeI	YGGCCR	1 cut(s)	271
FaeI	CATG	8 cut(s)	31, 115, 133, 305, 386, 407, 439, 485
FatI	CATG	8 cut(s)	27, 111, 129, 301, 382, 403, 435, 481
FauI	CCCGC	1 cut(s)	272
FbaI	TGATCA	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	2 cut(s)	254, 274
FokI	GGATG	1 cut(s)	147
Fsp4HI	GCNGC	2 cut(s)	254, 274
GluI	GCNGC	2 cut(s)	254, 274
HaeIII	GGCC	2 cut(s)	199, 273
Hin1II	CATG	8 cut(s)	31, 115, 133, 305, 386, 407, 439, 485
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	1 cut(s)	343
HphI	GGTGA	3 cut(s)	133, 275, 319
Hpy166II	GTNNAC	3 cut(s)	25, 88, 317
Hpy188III	TCNNGA	1 cut(s)	302
Hpy8I	GTNNAC	3 cut(s)	25, 88, 317
HpyAV	CCTTC	2 cut(s)	112, 174
HpyCH4III	ACNGT	3 cut(s)	35, 127, 392
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	3 cut(s)	19, 25, 115
HpyF10VI	GCNNNNNNNGC	2 cut(s)	273, 393
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	8 cut(s)	31, 115, 133, 305, 386, 407, 439, 485
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	2 cut(s)	304, 324
LmnI	GCTCC	1 cut(s)	400
LpnPI	CCDG	5 cut(s)	24, 162, 228, 263, 434
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	2 cut(s)	6, 265
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	2 cut(s)	306, 326
MboI	GATC	2 cut(s)	304, 324
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	3 cut(s)	337, 349, 370
MnlI	CCTC	5 cut(s)	162, 165, 429, 432, 489
MseI	TTAA	4 cut(s)	78, 158, 234, 441
MslI	CAYNNNNRTG	2 cut(s)	300, 458
MspA1I	CMGCKG	1 cut(s)	188
MvnI	CGCG	2 cut(s)	267, 276
MwoI	GCNNNNNNNGC	2 cut(s)	273, 393
NdeII	GATC	2 cut(s)	304, 324
NlaIII	CATG	8 cut(s)	31, 115, 133, 305, 386, 407, 439, 485
NmuCI	GTSAC	1 cut(s)	121
NspI	RCATGY	1 cut(s)	115
OliI	CACNNNNGTG	1 cut(s)	458
PagI	TCATGA	1 cut(s)	301
PcsI	WCGNNNNNNNCGW	2 cut(s)	96, 362
PfeI	GAWTC	1 cut(s)	343
PkrI	GCNGC	2 cut(s)	255, 275
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	2 cut(s)	245, 368
RsaNI	GTAC	2 cut(s)	244, 367
RseI	CAYNNNNRTG	2 cut(s)	300, 458
SaqAI	TTAA	4 cut(s)	78, 158, 234, 441
SatI	GCNGC	2 cut(s)	254, 274
Sau3AI	GATC	2 cut(s)	304, 324
ScaI	AGTACT	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	7 cut(s)	67, 78, 102, 123, 190, 195, 335
SfaNI	GCATC	2 cut(s)	6, 265
SfcI	CTRYAG	1 cut(s)	388
SmiMI	CAYNNNNRTG	2 cut(s)	300, 458
Sse9I	AATT	3 cut(s)	337, 349, 370
SsiI	CCGC	3 cut(s)	265, 274, 292
TaaI	ACNGT	3 cut(s)	35, 127, 392
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	341
TasI	AATT	3 cut(s)	337, 349, 370
TatI	WGTACW	1 cut(s)	243
TauI	GCSGC	1 cut(s)	276
TfiI	GAWTC	1 cut(s)	343
Tru1I	TTAA	4 cut(s)	78, 158, 234, 441
Tru9I	TTAA	4 cut(s)	78, 158, 234, 441
TscAI	CASTG	4 cut(s)	171, 397, 460, 472
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	1 cut(s)	486
TspRI	CASTG	4 cut(s)	171, 397, 460, 472
VneI	GTGCAC	1 cut(s)	23
XceI	RCATGY	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	87
ZrmI	AGTACT	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.