Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0017750

Physical Location & Seq

Genomic Coordinates Reverse (-)

3983292 .. 3990817

Gene Structure 7526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G081800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGAATTTCCTTTTGACCCCTGACAAAGGAAAGGAAGAGAAGCATGTGGGTGTCCAATGCTTGTATTGCAAAAAAGTATTCAAAAATCACCAGGCTCTAGGGGGCCATCTTAGCGCTCATCAGGAAGAGATCAACTCAAAGAGGAGCTGGAATTATCCTAGCCATTTCAGCAACTCAGTAAGCATTACTAACAATAGTCCTCAACCTTTCAGCATGCGTCATCCTGAAATTTTTTCTGGAGGCCCTCTCTTCAGTGAGGTAACCCCTCCTTTGGATTTCTCCAAGAGACTCTACTCAAATGAAAATAGCTGGGTGAATATAAGCAGGTTCTATGAGAACAATACGAGCGCTATGCCTCCAAAATGTTCATCTAGTAGTGGTCATGCTGAAATCCAAAATTCTAAACCTTTATCCTTCATAGCACCTGCTCCCTCTGTTAGCATGGTACCAATTAGTGTTCCTTTGGATCCTCCATTCTGTTTGGTCTCAAATGGAGTTTGTCAGTTTAATACTGATCAATTTCGATCTTTTAGGGATGGTATGCCATCCTTTTCTGCAAATGCCATGCCATGCTTTCAGGATCACAACTGTGTTATGATTCCGTATCCTGTGAATGCTGTAACTGATCTTCATCCAGATCTCAGCTCAAAACAGTCACTTTGCTTCAAGGAACCTATTACTATTGGTTCCTTGCCTCCAGATCCCAGTGAATCTTCAGGCCAAGGTGAAATTGGTCGGTATAAGACACAAACTGTCTCAACCTCTAAAGGTCGCAAGAAGCACTGCATAGGTGGAGCAGGAGGAAGTGCTGATGAGATAATGAATCCATCAAAAAAGCCTAAGAAAAACTCCGAGTTGTTGATGGAAACAGATAAGCCTCCACATCCCAGTCAATCTTCAGACCAAGGTGAAATTGGTCAGTACGAGACACAAATTCTCTTAACCTCTAAAGGAGGTAAGAGGCACTGCTTAGGTGAAGCTGGAGGAAGTGCCGAGATGATGAATTGTCAATGGAAAAGGCCTAAGATCAACTCCGAGTTGTCAATGGAAACCGATAAGCCTCCCAAGAGAGAGCTTCTTCTTTTTAAAGATGTGGAGAACTGCTTTTCCAGGGCAGGAATATCTTCTAATGCGGGAGAAGAGGAAGGCCAAATGGATCTCGATCTCTCTCTACATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

394

Amino Acids

43.26

Weight (kDa)

6.67

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017750)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G081800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0014311
rosa_laevigata	RLG00000032097
rosa_multiflora	Rmu_sc0009295.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062270
rosa_rugosa	Rorug05G0017100 Rorug05G0017200 Rorug05G0017300
rosa_samantha	Rh5AG111300 Rh5BG108600 Rh5CG120300 Rh5DG107300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	433
Acc36I	ACCTGC	2 cut(s)	315, 433
Acc65I	GGTACC	1 cut(s)	445
AccB1I	GGYRCC	1 cut(s)	445
AciI	CCGC	1 cut(s)	1133
AclWI	GGATC	5 cut(s)	461, 474, 588, 695, 1164
AcsI	RAATTY	4 cut(s)	4, 228, 397, 933
AcuI	CTGAAG	3 cut(s)	235, 699, 882
AfaI	GTAC	2 cut(s)	447, 923
AfeI	AGCGCT	2 cut(s)	115, 349
AfiI	CCNNNNNNNGG	2 cut(s)	26, 271
AgsI	TTSAA	2 cut(s)	82, 667
AjnI	CCWGG	2 cut(s)	90, 1109
AleI	CACNNNNGTG	1 cut(s)	588
AloI	GAACNNNNNNTCC	2 cut(s)	1091, 1123
AluBI	AGCT	5 cut(s)	147, 309, 645, 980, 1075
AluI	AGCT	5 cut(s)	147, 309, 645, 980, 1075
Alw26I	GTCTC	4 cut(s)	280, 490, 760, 920
AlwI	GGATC	5 cut(s)	461, 474, 588, 695, 1164
Aor51HI	AGCGCT	2 cut(s)	115, 349
AoxI	GGCC	5 cut(s)	103, 241, 718, 1019, 1147
ApoI	RAATTY	4 cut(s)	4, 228, 397, 933
Asp700I	GAANNNNTTC	1 cut(s)	1123
Asp718I	GGTACC	1 cut(s)	445
AspLEI	GCGC	2 cut(s)	116, 350
AspS9I	GGNCC	2 cut(s)	103, 242
AsuHPI	GGTGA	5 cut(s)	80, 325, 737, 920, 986
BamHI	GGATCC	1 cut(s)	466
BanI	GGYRCC	1 cut(s)	445
BarI	GAAGNNNNNNTAC	2 cut(s)	612, 644
BccI	CCATC	5 cut(s)	114, 530, 553, 835, 856
BcgI	CGANNNNNNTGC	2 cut(s)	334, 368
BciT130I	CCWGG	2 cut(s)	92, 1111
BciVI	GTATCC	1 cut(s)	615
BclI	TGATCA	1 cut(s)	514
BcoDI	GTCTC	4 cut(s)	280, 490, 760, 920
BfaI	CTAG	3 cut(s)	98, 159, 372
BfmI	CTRYAG	1 cut(s)	1178
BfoI	RGCGCY	2 cut(s)	117, 351
BfuAI	ACCTGC	2 cut(s)	315, 433
BfuI	GTATCC	1 cut(s)	615
BglII	AGATCT	1 cut(s)	637
Bme1390I	CCNGG	2 cut(s)	92, 1111
BmgT120I	GGNCC	2 cut(s)	103, 242
BmiI	GGNNCC	5 cut(s)	104, 447, 468, 672, 688
BmrFI	CCNGG	2 cut(s)	92, 1111
BmrI	ACTGGG	2 cut(s)	699, 882
BmuI	ACTGGG	2 cut(s)	699, 882
BplI	GAGNNNNNCTC	4 cut(s)	119, 151, 231, 263
BpmI	CTGGAG	3 cut(s)	258, 681, 1002
Bpu10I	CCTNAGC	1 cut(s)	970
BsaBI	GATNNNNATC	2 cut(s)	630, 1161
BsaI	GGTCTC	1 cut(s)	490
BsaJI	CCNNGG	3 cut(s)	721, 904, 1110
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 271
Bse1I	ACTGG	2 cut(s)	705, 888
Bse8I	GATNNNNATC	2 cut(s)	630, 1161
BseBI	CCWGG	2 cut(s)	92, 1111
BseDI	CCNNGG	3 cut(s)	721, 904, 1110
BseGI	GGATG	5 cut(s)	220, 541, 545, 631, 883
BseJI	GATNNNNATC	2 cut(s)	630, 1161
BseLI	CCNNNNNNNGG	2 cut(s)	26, 271
BseMII	CTCAG	2 cut(s)	189, 655
BseNI	ACTGG	2 cut(s)	705, 888
BseRI	GAGGAG	1 cut(s)	157
BseYI	CCCAGC	1 cut(s)	309
BshFI	GGCC	5 cut(s)	105, 243, 720, 1021, 1149
BshNI	GGYRCC	1 cut(s)	445
BslI	CCNNNNNNNGG	2 cut(s)	26, 271
BsmAI	GTCTC	4 cut(s)	280, 490, 760, 920
BsmI	GAATGC	1 cut(s)	619
BsnI	GGCC	5 cut(s)	105, 243, 720, 1021, 1149
Bso31I	GGTCTC	1 cut(s)	490
BspACI	CCGC	1 cut(s)	1133
BspANI	GGCC	5 cut(s)	105, 243, 720, 1021, 1149
BspCNI	CTCAG	2 cut(s)	188, 654
BspLI	GGNNCC	5 cut(s)	104, 447, 468, 672, 688
BspMI	ACCTGC	2 cut(s)	315, 433
BspPI	GGATC	5 cut(s)	461, 474, 588, 695, 1164
BspT107I	GGYRCC	1 cut(s)	445
BspTNI	GGTCTC	1 cut(s)	490
BsrI	ACTGG	2 cut(s)	705, 888
BssECI	CCNNGG	3 cut(s)	721, 904, 1110
BssT1I	CCWWGG	2 cut(s)	721, 904
Bst2UI	CCWGG	2 cut(s)	92, 1111
Bst4CI	ACNGT	3 cut(s)	590, 654, 754
Bst6I	CTCTTC	4 cut(s)	30, 120, 254, 1134
BstC8I	GCNNGC	1 cut(s)	215
BstDEI	CTNAG	6 cut(s)	110, 175, 641, 840, 970, 1023
BstEII	GGTNACC	1 cut(s)	259
BstENI	CCTNNNNNAGG	1 cut(s)	24
BstF5I	GGATG	5 cut(s)	220, 541, 545, 631, 883
BstH2I	RGCGCY	2 cut(s)	117, 351
BstHHI	GCGC	2 cut(s)	116, 350
BstMAI	GTCTC	4 cut(s)	280, 490, 760, 920
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 111, 168
BstNI	CCWGG	2 cut(s)	92, 1111
BstNSI	RCATGY	2 cut(s)	47, 217
BstPI	GGTNACC	1 cut(s)	259
BstSCI	CCNGG	2 cut(s)	90, 1109
BstSFI	CTRYAG	1 cut(s)	1178
BstX2I	RGATCY	4 cut(s)	466, 637, 700, 1156
BstYI	RGATCY	4 cut(s)	466, 637, 700, 1156
BsuI	GTATCC	1 cut(s)	615
BsuRI	GGCC	5 cut(s)	105, 243, 720, 1021, 1149
BtsCI	GGATG	5 cut(s)	220, 541, 545, 631, 883
BtsI	GCAGTG	2 cut(s)	781, 964
BtsIMutI	CAGTG	4 cut(s)	259, 712, 781, 964
BveI	ACCTGC	2 cut(s)	315, 433
Cac8I	GCNNGC	1 cut(s)	215
CfoI	GCGC	2 cut(s)	116, 350
Cfr13I	GGNCC	2 cut(s)	103, 242
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	2 cut(s)	446, 922
CviAII	CATG	6 cut(s)	44, 214, 383, 442, 565, 570
CviQI	GTAC	2 cut(s)	446, 922
DdeI	CTNAG	6 cut(s)	110, 175, 641, 840, 970, 1023
DraI	TTTAAA	1 cut(s)	1087
Eam1104I	CTCTTC	4 cut(s)	30, 120, 254, 1134
EarI	CTCTTC	4 cut(s)	30, 120, 254, 1134
Eco130I	CCWWGG	2 cut(s)	721, 904
Eco147I	AGGCCT	1 cut(s)	1021
Eco31I	GGTCTC	1 cut(s)	490
Eco47III	AGCGCT	2 cut(s)	115, 349
Eco57I	CTGAAG	3 cut(s)	235, 699, 882
Eco91I	GGTNACC	1 cut(s)	259
EcoNI	CCTNNNNNAGG	1 cut(s)	24
EcoO109I	RGGNCCY	1 cut(s)	242
EcoO65I	GGTNACC	1 cut(s)	259
EcoRII	CCWGG	2 cut(s)	90, 1109
EcoT14I	CCWWGG	2 cut(s)	721, 904
ErhI	CCWWGG	2 cut(s)	721, 904
FaeI	CATG	6 cut(s)	47, 217, 386, 445, 568, 573
FatI	CATG	6 cut(s)	43, 213, 382, 441, 564, 569
FauI	CCCGC	1 cut(s)	1126
FbaI	TGATCA	1 cut(s)	514
FokI	GGATG	5 cut(s)	207, 532, 548, 618, 870
FspBI	CTAG	3 cut(s)	98, 159, 372
GlaI	GCGC	2 cut(s)	115, 349
GsaI	CCCAGC	1 cut(s)	313
GsuI	CTGGAG	3 cut(s)	258, 681, 1002
HaeII	RGCGCY	2 cut(s)	117, 351
HaeIII	GGCC	5 cut(s)	105, 243, 720, 1021, 1149
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	2 cut(s)	116, 350
Hin1II	CATG	6 cut(s)	47, 217, 386, 445, 568, 573
Hin6I	GCGC	2 cut(s)	114, 348
HinP1I	GCGC	2 cut(s)	114, 348
HinfI	GANTC	4 cut(s)	288, 598, 710, 823
HphI	GGTGA	5 cut(s)	80, 325, 737, 920, 986
Hpy188I	TCNGA	3 cut(s)	853, 901, 1036
Hpy188III	TCNNGA	7 cut(s)	122, 224, 237, 578, 635, 698, 1160
HpyAV	CCTTC	2 cut(s)	424, 1139
HpyCH4III	ACNGT	3 cut(s)	590, 654, 754
HpyCH4V	TGCA	3 cut(s)	69, 557, 786
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 111, 168
HpyF3I	CTNAG	6 cut(s)	110, 175, 641, 840, 970, 1023
Hsp92II	CATG	6 cut(s)	47, 217, 386, 445, 568, 573
HspAI	GCGC	2 cut(s)	114, 348
KpnI	GGTACC	1 cut(s)	449
Ksp22I	TGATCA	1 cut(s)	514
LmnI	GCTCC	3 cut(s)	144, 433, 794
MaeI	CTAG	3 cut(s)	98, 159, 372
MaeIII	GTNAC	3 cut(s)	259, 619, 654
MboII	GAAGA	9 cut(s)	47, 137, 241, 620, 705, 888, 1070, 1116, 1151
MflI	RGATCY	4 cut(s)	466, 637, 700, 1156
MlyI	GAGTC	1 cut(s)	282
MroXI	GAANNNNTTC	1 cut(s)	1123
MseI	TTAA	3 cut(s)	507, 941, 1086
MslI	CAYNNNNRTG	2 cut(s)	48, 588
MspR9I	CCNGG	2 cut(s)	92, 1111
Mva1269I	GAATGC	1 cut(s)	619
MvaI	CCWGG	2 cut(s)	92, 1111
MwoI	GCNNNNNNNGC	3 cut(s)	66, 111, 168
NlaIII	CATG	6 cut(s)	47, 217, 386, 445, 568, 573
NlaIV	GGNNCC	5 cut(s)	104, 447, 468, 672, 688
NmeAIII	GCCGAG	1 cut(s)	1018
NmuCI	GTSAC	1 cut(s)	654
NspI	RCATGY	2 cut(s)	47, 217
OliI	CACNNNNGTG	1 cut(s)	588
PaeI	GCATGC	1 cut(s)	217
PaqCI	CACCTGC	1 cut(s)	433
PceI	AGGCCT	1 cut(s)	1021
PctI	GAATGC	1 cut(s)	619
PdmI	GAANNNNTTC	1 cut(s)	1123
PfeI	GAWTC	3 cut(s)	598, 710, 823
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
Psp6I	CCWGG	2 cut(s)	90, 1109
PspEI	GGTNACC	1 cut(s)	259
PspFI	CCCAGC	1 cut(s)	309
PspGI	CCWGG	2 cut(s)	90, 1109
PspN4I	GGNNCC	5 cut(s)	104, 447, 468, 672, 688
PspPI	GGNCC	2 cut(s)	103, 242
PsuI	RGATCY	4 cut(s)	466, 637, 700, 1156
RsaI	GTAC	2 cut(s)	447, 923
RsaNI	GTAC	2 cut(s)	446, 922
RseI	CAYNNNNRTG	2 cut(s)	48, 588
SaqAI	TTAA	3 cut(s)	507, 941, 1086
Sau96I	GGNCC	2 cut(s)	103, 242
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	2 cut(s)	92, 1111
SfcI	CTRYAG	1 cut(s)	1178
SmiMI	CAYNNNNRTG	2 cut(s)	48, 588
SphI	GCATGC	1 cut(s)	217
SseBI	AGGCCT	1 cut(s)	1021
SsiI	CCGC	1 cut(s)	1133
SspMI	CTAG	3 cut(s)	98, 159, 372
StuI	AGGCCT	1 cut(s)	1021
StyD4I	CCNGG	2 cut(s)	90, 1109
StyI	CCWWGG	2 cut(s)	721, 904
TaaI	ACNGT	3 cut(s)	590, 654, 754
TaqI	TCGA	2 cut(s)	523, 1161
TfiI	GAWTC	3 cut(s)	598, 710, 823
Tru1I	TTAA	3 cut(s)	507, 941, 1086
Tru9I	TTAA	3 cut(s)	507, 941, 1086
TscAI	CASTG	4 cut(s)	259, 712, 788, 971
TseFI	GTSAC	1 cut(s)	654
Tsp45I	GTSAC	1 cut(s)	654
TspDTI	ATGAA	7 cut(s)	17, 315, 357, 406, 620, 836, 1016
TspGWI	ACGGA	1 cut(s)	591
TspRI	CASTG	4 cut(s)	259, 712, 788, 971
XagI	CCTNNNNNAGG	1 cut(s)	24
XapI	RAATTY	4 cut(s)	4, 228, 397, 933
XceI	RCATGY	2 cut(s)	47, 217
XcmI	CCANNNNNNNNNTGG	2 cut(s)	728, 911
XmnI	GAANNNNTTC	1 cut(s)	1123
XspI	CTAG	3 cut(s)	98, 159, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.