Rorug05G0017300

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0017750
Physical Location & Seq
Reverse (-)
1166197 .. 1167391
1195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0017300.1

Sequence Viewer

Length: 528 bp
ATGGAATCCTCTGCAGCACTTGTGCCATTCTCTCAGCTCCCATCTTTCTTCCCACAAAAACCCAACAACAGAATTAGCAAAGCTCATCCTTCTTGGCCATCCAAACCAAGAACTTCTCTGCCAACTCGCATACACTGCCAAAAGATGTATGTCCCTGGATTTGGAGAAGCGTCCCCAGAAGCAAAGGCAGCCAATAACCTCCATAGTTTCTTCACTTATGTTGCGGTTAGCATTGTCACTGCACAGCTTGAGAGTTACAACACAGAGGCATATGAAGAGCTAATGGAGTTTTTGAGTCGAAACTCATTGAATGATGGAGACAAGTTCTGTGCCGATTTGATGCGAGAATCTTCCAGGCATCAGGCTCTAGCTTTGCGCATTTTAGAGGTTCGATCTGCATATTGTAAAAATGATTTTGAATGGGACAACCTAAAGCGACTGGCTTGCAAGATGGTGGATGAATCCAACACAAGACTCATGAGAGATTATGTCTTGGAAACAAGTCATGTGGACAATGAAGGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.99

Weight (kDa)

6.52

Isoelectric Point (pI)

43.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RbcX PF02341 62 - 166 2.5e-29 RbcX protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017750)

Species Orthologous Gene IDs
prunus_persica Prupe.4G081800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0014311
rosa_laevigata RLG00000032097
rosa_multiflora Rmu_sc0009295.1_g000004
rosa_roxburghii Rroxscaffold_1G00062270
rosa_rugosa Rorug05G0017100 Rorug05G0017200 Rorug05G0017300
rosa_samantha Rh5AG111300 Rh5BG108600 Rh5CG120300 Rh5DG107300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 377
AciI CCGC 1 cut(s) 224
AcoI YGGCCR 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 161
AgsI TTSAA 2 cut(s) 310, 419
AjnI CCWGG 2 cut(s) 154, 353
AluBI AGCT 5 cut(s) 37, 83, 247, 280, 371
AluI AGCT 5 cut(s) 37, 83, 247, 280, 371
Alw26I GTCTC 1 cut(s) 312
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 2 cut(s) 14, 188
AspLEI GCGC 1 cut(s) 378
BalI TGGCCA 1 cut(s) 97
BbvI GCAGC 2 cut(s) 26, 200
BccI CCATC 4 cut(s) 49, 106, 308, 445
BcgI CGANNNNNNTGC 2 cut(s) 426, 460
BciT130I CCWGG 2 cut(s) 156, 355
BcoDI GTCTC 1 cut(s) 312
BfaI CTAG 1 cut(s) 368
BfmI CTRYAG 1 cut(s) 12
BisI GCNGC 2 cut(s) 15, 189
BlsI GCNGC 2 cut(s) 16, 190
Bme1390I CCNGG 2 cut(s) 156, 355
BmrFI CCNGG 2 cut(s) 156, 355
BmsI GCATC 2 cut(s) 330, 367
BpuEI CTTGAG 1 cut(s) 269
BsaJI CCNNGG 1 cut(s) 154
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse1I ACTGG 1 cut(s) 444
BseBI CCWGG 2 cut(s) 156, 355
BseDI CCNNGG 1 cut(s) 154
BseGI GGATG 3 cut(s) 85, 98, 463
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMII CTCAG 1 cut(s) 47
BseNI ACTGG 1 cut(s) 444
BseXI GCAGC 2 cut(s) 26, 200
BsgI GTGCAG 1 cut(s) 225
BshFI GGCC 1 cut(s) 97
BslFI GGGAC 3 cut(s) 137, 157, 437
BslI CCNNNNNNNGG 1 cut(s) 161
BsmAI GTCTC 1 cut(s) 312
BsmFI GGGAC 3 cut(s) 137, 157, 437
BsnI GGCC 1 cut(s) 97
Bsp143I GATC 1 cut(s) 392
BspACI CCGC 1 cut(s) 224
BspANI GGCC 1 cut(s) 97
BspCNI CTCAG 1 cut(s) 46
BspHI TCATGA 1 cut(s) 477
BspMAI CTGCAG 1 cut(s) 16
BspQI GCTCTTC 1 cut(s) 270
BsrI ACTGG 1 cut(s) 444
BssECI CCNNGG 1 cut(s) 154
BssMI GATC 1 cut(s) 392
Bst2UI CCWGG 2 cut(s) 156, 355
Bst6I CTCTTC 1 cut(s) 270
BstAPI GCANNNNNTGC 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 445
BstDEI CTNAG 1 cut(s) 33
BstF5I GGATG 3 cut(s) 85, 98, 463
BstHHI GCGC 1 cut(s) 378
BstKTI GATC 1 cut(s) 395
BstMAI GTCTC 1 cut(s) 312
BstMBI GATC 1 cut(s) 392
BstMWI GCNNNNNNNGC 2 cut(s) 135, 188
BstNI CCWGG 2 cut(s) 156, 355
BstSCI CCNGG 2 cut(s) 154, 353
BstSFI CTRYAG 1 cut(s) 12
BstV1I GCAGC 2 cut(s) 26, 200
BsuRI GGCC 1 cut(s) 97
BtsCI GGATG 3 cut(s) 85, 98, 463
BtsI GCAGTG 2 cut(s) 133, 237
BtsIMutI CAGTG 2 cut(s) 133, 237
Cac8I GCNNGC 1 cut(s) 445
CciI TCATGA 1 cut(s) 477
CfoI GCGC 1 cut(s) 378
CseI GACGC 1 cut(s) 159
CspCI CAANNNNNGTGG 2 cut(s) 489, 524
CviAII CATG 2 cut(s) 478, 506
CviJI RGCY 9 cut(s) 37, 83, 97, 191, 247, 280, 365, 371, 443
CviKI_1 RGCY 9 cut(s) 37, 83, 97, 191, 247, 280, 365, 371, 443
DdeI CTNAG 1 cut(s) 33
DpnI GATC 1 cut(s) 394
DpnII GATC 1 cut(s) 392
EaeI YGGCCR 1 cut(s) 95
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
EcoRII CCWGG 2 cut(s) 154, 353
FaeI CATG 2 cut(s) 481, 509
FaqI GGGAC 3 cut(s) 137, 157, 437
FatI CATG 2 cut(s) 477, 505
FauNDI CATATG 1 cut(s) 271
Fnu4HI GCNGC 2 cut(s) 15, 189
FokI GGATG 3 cut(s) 72, 85, 470
Fsp4HI GCNGC 2 cut(s) 15, 189
FspBI CTAG 1 cut(s) 368
FspI TGCGCA 1 cut(s) 377
GlaI GCGC 1 cut(s) 377
GluI GCNGC 2 cut(s) 15, 189
HaeIII GGCC 1 cut(s) 97
HgaI GACGC 1 cut(s) 159
HhaI GCGC 1 cut(s) 378
Hin1II CATG 2 cut(s) 481, 509
Hin6I GCGC 1 cut(s) 376
HinP1I GCGC 1 cut(s) 376
HinfI GANTC 5 cut(s) 5, 295, 347, 461, 474
Hpy166II GTNNAC 1 cut(s) 511
Hpy188III TCNNGA 1 cut(s) 478
Hpy8I GTNNAC 1 cut(s) 511
HpyAV CCTTC 2 cut(s) 99, 512
HpyCH4V TGCA 4 cut(s) 14, 242, 398, 447
HpyF10VI GCNNNNNNNGC 2 cut(s) 135, 188
HpyF3I CTNAG 1 cut(s) 33
Hsp92II CATG 2 cut(s) 481, 509
HspAI GCGC 1 cut(s) 376
Kzo9I GATC 1 cut(s) 392
LguI GCTCTTC 1 cut(s) 270
LmnI GCTCC 1 cut(s) 42
LpnPI CCDG 7 cut(s) 141, 168, 189, 340, 347, 367, 425
Lsp1109I GCAGC 2 cut(s) 26, 200
LweI GCATC 2 cut(s) 330, 367
MaeI CTAG 1 cut(s) 368
MaeIII GTNAC 2 cut(s) 235, 254
MalI GATC 1 cut(s) 394
MboI GATC 1 cut(s) 392
MboII GAAGA 4 cut(s) 40, 202, 287, 342
MlsI TGGCCA 1 cut(s) 97
MluCI AATT 1 cut(s) 72
MluNI TGGCCA 1 cut(s) 97
MlyI GAGTC 2 cut(s) 304, 468
MmeI TCCRAC 1 cut(s) 489
MnlI CCTC 4 cut(s) 19, 209, 259, 379
Mox20I TGGCCA 1 cut(s) 97
MscI TGGCCA 1 cut(s) 97
Msp20I TGGCCA 1 cut(s) 97
MspR9I CCNGG 2 cut(s) 156, 355
MvaI CCWGG 2 cut(s) 156, 355
MwoI GCNNNNNNNGC 2 cut(s) 135, 188
NdeI CATATG 1 cut(s) 271
NdeII GATC 1 cut(s) 392
NlaIII CATG 2 cut(s) 481, 509
NmuCI GTSAC 1 cut(s) 235
NsbI TGCGCA 1 cut(s) 377
PagI TCATGA 1 cut(s) 477
PciSI GCTCTTC 1 cut(s) 270
PfeI GAWTC 3 cut(s) 5, 347, 461
PkrI GCNGC 2 cut(s) 16, 190
PleI GAGTC 2 cut(s) 303, 468
PpsI GAGTC 2 cut(s) 303, 468
Psp6I CCWGG 2 cut(s) 154, 353
PspGI CCWGG 2 cut(s) 154, 353
PstI CTGCAG 1 cut(s) 16
SapI GCTCTTC 1 cut(s) 270
SatI GCNGC 2 cut(s) 15, 189
Sau3AI GATC 1 cut(s) 392
SchI GAGTC 2 cut(s) 304, 468
ScrFI CCNGG 2 cut(s) 156, 355
SetI ASST 8 cut(s) 39, 85, 201, 249, 282, 373, 390, 432
SfaNI GCATC 2 cut(s) 330, 367
SfcI CTRYAG 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 1 cut(s) 72
SsiI CCGC 1 cut(s) 224
SspMI CTAG 1 cut(s) 368
StyD4I CCNGG 2 cut(s) 154, 353
TaqI TCGA 2 cut(s) 298, 391
TasI AATT 1 cut(s) 72
TfiI GAWTC 3 cut(s) 5, 347, 461
TscAI CASTG 2 cut(s) 140, 244
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 2 cut(s) 14, 188
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 2 cut(s) 288, 474
TspRI CASTG 2 cut(s) 140, 244
XspI CTAG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.