Rh5DG107300

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0017750
Physical Location & Seq
Reverse (-)
9751119 .. 9755788
4670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG107300.1

Sequence Viewer

Length: 612 bp
ATGAAGAGCTGGAACTTTCCTGGCCATTTCAGCAACTCAGAAACCGTTACTAGCAATACTCAACCTCCCACCATCTCCCATCCTGAGAACTTTTCTGAAGGTGCTGGGAGCCATCAATCTCGTTTGCTCTCAAATGGAGTTTGTCAGTTCAATACTGATCAAGTTCAAAATTTTATGGATAGTATGCCATCCCTTTCTGAAAATGCCTTGCCATGCTTTCAGAATAACTACTGTGGCAAGCTTCCTTCTCTTGTGGATGCTGTAACTTTTGATCCAGATCTCAGCTCAAATCAGTCGCCTGCCTTCAAGGAGCGTAATATTCTTGATTTCTTTAATTGCAATCTCAGTCAATCTTCAGGCCAAGGTGAAGCTGGTCAATCTAAGAAAAATAATGGAGGTAAGAGGCGCTGCTCAGGTGAAGCCCAAGGAAATGCTGGGACTGTGAATGAGTTGAAAAAGACCAAGATCAACTCAGATGAGATGGAAACTGATAGTCCTCAGAAGAGAGAGCTTCTTCTTGTTAAAGAGGAGGACAACTCCAATTCTGGTTCAGGAATGCCTTATGATGTGGAAGAAGGCAAGACAAACCTTGATCTGTCGCTACATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

22.19

Weight (kDa)

4.9

Isoelectric Point (pI)

46.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017750)

Species Orthologous Gene IDs
prunus_persica Prupe.4G081800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0014311
rosa_laevigata RLG00000032097
rosa_multiflora Rmu_sc0009295.1_g000004
rosa_roxburghii Rroxscaffold_1G00062270
rosa_rugosa Rorug05G0017100 Rorug05G0017200 Rorug05G0017300
rosa_samantha Rh5AG111300 Rh5BG108600 Rh5CG120300 Rh5DG107300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 266
AcoI YGGCCR 1 cut(s) 22
AcsI RAATTY 1 cut(s) 169
AcuI CTGAAG 2 cut(s) 117, 339
AgsI TTSAA 4 cut(s) 151, 167, 307, 454
AjnI CCWGG 1 cut(s) 19
AluBI AGCT 5 cut(s) 9, 241, 285, 371, 511
AluI AGCT 5 cut(s) 9, 241, 285, 371, 511
AlwI GGATC 1 cut(s) 266
AoxI GGCC 2 cut(s) 22, 358
ApeKI GCWGC 1 cut(s) 408
ApoI RAATTY 1 cut(s) 169
AspLEI GCGC 1 cut(s) 408
AsuHPI GGTGA 2 cut(s) 377, 428
BalI TGGCCA 1 cut(s) 24
BbvI GCAGC 1 cut(s) 395
BccI CCATC 5 cut(s) 80, 87, 120, 196, 475
BciT130I CCWGG 1 cut(s) 21
BclI TGATCA 1 cut(s) 157
BfaI CTAG 1 cut(s) 51
BfoI RGCGCY 1 cut(s) 409
BglII AGATCT 1 cut(s) 277
BisI GCNGC 1 cut(s) 409
BlsI GCNGC 1 cut(s) 410
Bme1390I CCNGG 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 21
BmsI GCATC 1 cut(s) 247
BplI GAGNNNNNCTC 2 cut(s) 521, 553
Bpu10I CCTNAGC 1 cut(s) 412
BsaBI GATNNNNATC 1 cut(s) 276
BsaJI CCNNGG 2 cut(s) 361, 424
BsaXI ACNNNNNCTCC 2 cut(s) 49, 79
Bse8I GATNNNNATC 1 cut(s) 276
BseBI CCWGG 1 cut(s) 21
BseDI CCNNGG 2 cut(s) 361, 424
BseGI GGATG 3 cut(s) 79, 188, 262
BseJI GATNNNNATC 1 cut(s) 276
BseMII CTCAG 7 cut(s) 51, 75, 295, 358, 426, 486, 512
BseRI GAGGAG 1 cut(s) 542
BseXI GCAGC 1 cut(s) 395
BseYI CCCAGC 2 cut(s) 104, 434
BshFI GGCC 2 cut(s) 24, 360
BslFI GGGAC 1 cut(s) 451
BsmFI GGGAC 1 cut(s) 451
BsmI GAATGC 1 cut(s) 561
BsnI GGCC 2 cut(s) 24, 360
Bsp143I GATC 5 cut(s) 157, 271, 277, 465, 592
BspANI GGCC 2 cut(s) 24, 360
BspCNI CTCAG 7 cut(s) 50, 76, 294, 357, 425, 485, 511
BspLI GGNNCC 1 cut(s) 110
BspPI GGATC 1 cut(s) 266
BssECI CCNNGG 2 cut(s) 361, 424
BssMI GATC 5 cut(s) 157, 271, 277, 465, 592
BssT1I CCWWGG 2 cut(s) 361, 424
Bst2UI CCWGG 1 cut(s) 21
Bst4CI ACNGT 3 cut(s) 46, 233, 442
Bst6I CTCTTC 1 cut(s) 497
BstC8I GCNNGC 2 cut(s) 239, 300
BstDEI CTNAG 8 cut(s) 37, 84, 281, 344, 381, 412, 472, 498
BstF5I GGATG 3 cut(s) 79, 188, 262
BstH2I RGCGCY 1 cut(s) 409
BstHHI GCGC 1 cut(s) 408
BstKTI GATC 5 cut(s) 160, 274, 280, 468, 595
BstMBI GATC 5 cut(s) 157, 271, 277, 465, 592
BstMWI GCNNNNNNNGC 1 cut(s) 30
BstNI CCWGG 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 19
BstV1I GCAGC 1 cut(s) 395
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BsuRI GGCC 2 cut(s) 24, 360
BtsCI GGATG 3 cut(s) 79, 188, 262
Cac8I GCNNGC 2 cut(s) 239, 300
CfoI GCGC 1 cut(s) 408
CviAII CATG 1 cut(s) 213
CviJI RGCY 9 cut(s) 9, 24, 111, 241, 285, 360, 371, 422, 511
CviKI_1 RGCY 9 cut(s) 9, 24, 111, 241, 285, 360, 371, 422, 511
DdeI CTNAG 8 cut(s) 37, 84, 281, 344, 381, 412, 472, 498
DpnI GATC 5 cut(s) 159, 273, 279, 467, 594
DpnII GATC 5 cut(s) 157, 271, 277, 465, 592
EaeI YGGCCR 1 cut(s) 22
Eam1104I CTCTTC 1 cut(s) 497
EarI CTCTTC 1 cut(s) 497
Eco130I CCWWGG 2 cut(s) 361, 424
Eco57I CTGAAG 2 cut(s) 117, 339
EcoRII CCWGG 1 cut(s) 19
EcoT14I CCWWGG 2 cut(s) 361, 424
ErhI CCWWGG 2 cut(s) 361, 424
FaeI CATG 1 cut(s) 216
FaiI YATR 4 cut(s) 176, 185, 214, 564
FaqI GGGAC 1 cut(s) 451
FatI CATG 1 cut(s) 212
FbaI TGATCA 1 cut(s) 157
Fnu4HI GCNGC 1 cut(s) 409
FokI GGATG 3 cut(s) 66, 175, 269
Fsp4HI GCNGC 1 cut(s) 409
FspBI CTAG 1 cut(s) 51
GlaI GCGC 1 cut(s) 407
GluI GCNGC 1 cut(s) 409
GsaI CCCAGC 2 cut(s) 108, 438
HaeII RGCGCY 1 cut(s) 409
HaeIII GGCC 2 cut(s) 24, 360
HhaI GCGC 1 cut(s) 408
Hin1II CATG 1 cut(s) 216
Hin6I GCGC 1 cut(s) 406
HinP1I GCGC 1 cut(s) 406
HindIII AAGCTT 1 cut(s) 239
HphI GGTGA 2 cut(s) 377, 428
Hpy188I TCNGA 6 cut(s) 40, 97, 199, 222, 475, 501
Hpy188III TCNNGA 4 cut(s) 83, 275, 323, 552
HpyAV CCTTC 4 cut(s) 92, 255, 313, 569
HpyCH4III ACNGT 3 cut(s) 46, 233, 442
HpyCH4V TGCA 1 cut(s) 339
HpyF10VI GCNNNNNNNGC 1 cut(s) 30
HpyF3I CTNAG 8 cut(s) 37, 84, 281, 344, 381, 412, 472, 498
Hsp92II CATG 1 cut(s) 216
HspAI GCGC 1 cut(s) 406
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 5 cut(s) 157, 271, 277, 465, 592
LmnI GCTCC 2 cut(s) 108, 310
Lsp1109I GCAGC 1 cut(s) 395
LweI GCATC 1 cut(s) 247
MaeI CTAG 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 46, 262
MalI GATC 5 cut(s) 159, 273, 279, 467, 594
MboI GATC 5 cut(s) 157, 271, 277, 465, 592
MboII GAAGA 5 cut(s) 16, 345, 506, 514, 584
MflI RGATCY 1 cut(s) 277
MlsI TGGCCA 1 cut(s) 24
MluCI AATT 3 cut(s) 169, 334, 541
MluNI TGGCCA 1 cut(s) 24
MnlI CCTC 6 cut(s) 75, 389, 396, 507, 520, 523
Mox20I TGGCCA 1 cut(s) 24
MscI TGGCCA 1 cut(s) 24
MseI TTAA 2 cut(s) 333, 522
Msp20I TGGCCA 1 cut(s) 24
MspR9I CCNGG 1 cut(s) 21
Mva1269I GAATGC 1 cut(s) 561
MvaI CCWGG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 30
NdeII GATC 5 cut(s) 157, 271, 277, 465, 592
NlaIII CATG 1 cut(s) 216
NlaIV GGNNCC 1 cut(s) 110
PctI GAATGC 1 cut(s) 561
PkrI GCNGC 1 cut(s) 410
Psp6I CCWGG 1 cut(s) 19
PspFI CCCAGC 2 cut(s) 104, 434
PspGI CCWGG 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 110
PsuI RGATCY 1 cut(s) 277
SaqAI TTAA 2 cut(s) 333, 522
SatI GCNGC 1 cut(s) 409
Sau3AI GATC 5 cut(s) 157, 271, 277, 465, 592
ScrFI CCNGG 1 cut(s) 21
SfaNI GCATC 1 cut(s) 247
Sse9I AATT 3 cut(s) 169, 334, 541
SspI AATATT 1 cut(s) 319
SspMI CTAG 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 19
StyI CCWWGG 2 cut(s) 361, 424
TaaI ACNGT 3 cut(s) 46, 233, 442
TasI AATT 3 cut(s) 169, 334, 541
Tru1I TTAA 2 cut(s) 333, 522
Tru9I TTAA 2 cut(s) 333, 522
TseI GCWGC 1 cut(s) 408
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 169
XcmI CCANNNNNNNNNTGG 2 cut(s) 368, 431
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.