Prupe.4G082700_v2.0.a1

Leucine Rich Repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0016779
Physical Location & Seq
Reverse (-)
4037562 .. 4039527
1966 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G082700.1

Sequence Viewer

Length: 1314 bp
ATGGGGAAGGAGGAGCTTTTGGGGCTTTTTGAAGTTTTGGGTGCCCTTCTAGGAGACTCCAGCTGGGCCCAAGAACACCCACAACCATGTGATGAGACTCCATGGCCTGGTGTTCAATGTGAGATTGGTGATGAAAACCCTCCAATGTTTCATGTCACAAAGATTCACATTGGCCCTGATCCTGCTTGCAAATCCTCTGCTACCCTATCAGAGTCCCTGCTCAAACTACCTTACTTGAAAACACTTTCCATTTTCAATTGCTTTTTGACATCACCAGTCACTCTTTCTCCAACTCTACTTGGTGCGCTGTCTTCCTTGGAACACCTAGCCCTTGTGTCCAATCCAGCCCTCTCAGGAGAACTTCCCCCAAGTTTAGCCAAAATTTCCAACTTAAGGGTCCTGAGCCTGTCACAGAACAATCTACTAGGCAAGATCCCTGGGAACATTGGTGGGATGGTCAGCTTAGAGCAACTTGACCTAAGTTACAACAATTTAAGTGGTCAAATACCAGTAGAAATTGGAGGGTTGAGGACTTTGAGCATTTTGGATTTAAGTTGGAATGTTCTAGAAGGTCAGGTGCCTGGCTCTGTTGGTCAGCTTCAGCTCATCCAAAAGATTGATTTAAGTTCAAATAGATTTACAGGAAGCATGCCTCCAGATACAGGGAAGCTCAACAAGTTGGTGTTGCTTGATCTGAGTCATAACTTGATAAATGGGCCAATCCCTGAAACCCTTTCAGGTTTGGAGCAATTACAGTACTTGGTAGCTGATAACAACCCAATCAACACAGAAATTCCTCAGTTTGTAGGGAAGCTCATGAAGCTCAAATCACTGAGCTTTTCAGGATGCGGTTTGACTGGTCCATTGCCCAACTCTCTATCTTCCTTGAAAAATCTCACTGCTCTTTCTCTGGACAACAATAGCCTTACTGGGACAGTTCCTCCAGATTTAGGGACTCTTCCAAGTTTAAATCAGCTAAATTTGAGCAACAATCAGCTAAGTGGAGATCTATCACTTCCAGAGGAGTTCATTGAGAGGCTTGGGAAGAGGTTGGATGTAAGAGGAAATAATGGTCTATGTACAAGCAATCCACTTTACAAGAAGAAGAGCATTTCTACTAATCTGATAACCCCTCTTTGTTTGAATGCAAGTGGACCAAGAGATGGCAAAACCTTGGCTGGTGAACACCCAAATGAGTCTGACAGAATGAAGCCATGTAGTCAGTACCCTGTTCAGAAAAGTTCAGGTTCTTCATGGTCATATGAACTGAATTCATGTAGTTTTGTTGTATGCTTCTTGTATCTCATGTTGTAA

Protein Analysis

438

Amino Acids

46.9

Weight (kDa)

5.25

Isoelectric Point (pI)

32.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016779)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g05310
malus_domestica MD05G1281800.v1.1
prunus_persica Prupe.4G082700_v2.0.a1
pyrus_communis pycom05g26170
rosa_chinensis RchiOBHm_Chr5g0014421
rosa_laevigata RLG00000032107
rosa_multiflora Rmu_ssc0000422.1_g000037
rosa_roxburghii Rroxscaffold_1G00062160
rosa_rugosa Rorug05G0017900
rosa_samantha Rh5AG112800 Rh5BG109600 Rh5CG121400 Rh5DG108600
rosa_wichuraiana Rw5G009790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 41, 577
AccB7I CCANNNNNTGG 2 cut(s) 107, 1163
AciI CCGC 1 cut(s) 849
AclWI GGATC 2 cut(s) 173, 427
AcsI RAATTY 4 cut(s) 381, 792, 979, 1270
AcuI CTGAAG 1 cut(s) 584
AfaI GTAC 3 cut(s) 758, 1081, 1226
AfiI CCNNNNNNNGG 5 cut(s) 107, 393, 662, 950, 1163
AflII CTTAAG 1 cut(s) 391
AgsI TTSAA 7 cut(s) 32, 116, 238, 256, 630, 889, 1144
AjnI CCWGG 3 cut(s) 106, 436, 580
Alw26I GTCTC 2 cut(s) 48, 89
AlwI GGATC 2 cut(s) 173, 427
AoxI GGCC 4 cut(s) 66, 104, 172, 716
ApaI GGGCCC 1 cut(s) 70
ApoI RAATTY 4 cut(s) 381, 792, 979, 1270
AspLEI GCGC 1 cut(s) 307
AspS9I GGNCC 7 cut(s) 66, 67, 173, 397, 716, 860, 1154
AsuHPI GGTGA 3 cut(s) 140, 264, 1193
AvaII GGWCC 3 cut(s) 397, 860, 1154
BaeGI GKGCMC 2 cut(s) 46, 70
BanI GGYRCC 2 cut(s) 41, 577
BanII GRGCYC 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 303
BccI CCATC 2 cut(s) 448, 1157
BciT130I CCWGG 3 cut(s) 108, 438, 582
BcoDI GTCTC 2 cut(s) 48, 89
BfaI CTAG 4 cut(s) 50, 326, 425, 566
BfrI CTTAAG 1 cut(s) 391
BglII AGATCT 1 cut(s) 1006
BmcAI AGTACT 1 cut(s) 758
Bme1390I CCNGG 3 cut(s) 108, 438, 582
Bme18I GGWCC 3 cut(s) 397, 860, 1154
BmgT120I GGNCC 7 cut(s) 66, 67, 173, 397, 716, 860, 1154
BmiI GGNNCC 4 cut(s) 43, 68, 398, 579
BmrFI CCNGG 3 cut(s) 108, 438, 582
BmrI ACTGGG 1 cut(s) 939
BmsI GCATC 1 cut(s) 836
BmuI ACTGGG 1 cut(s) 939
BpiI GAAGAC 1 cut(s) 303
BpmI CTGGAG 3 cut(s) 43, 639, 927
Bpu10I CCTNAGC 1 cut(s) 401
BsaJI CCNNGG 5 cut(s) 101, 315, 436, 437, 1173
BsaXI ACNNNNNCTCC 4 cut(s) 271, 301, 925, 955
Bsc4I CCNNNNNNNGG 5 cut(s) 107, 393, 662, 950, 1163
Bse1I ACTGG 4 cut(s) 275, 509, 862, 934
Bse3DI GCAATG 1 cut(s) 863
BseBI CCWGG 3 cut(s) 108, 438, 582
BseDI CCNNGG 5 cut(s) 101, 315, 436, 437, 1173
BseGI GGATG 4 cut(s) 459, 606, 851, 1060
BseLI CCNNNNNNNGG 5 cut(s) 107, 393, 662, 950, 1163
BseMI GCAATG 1 cut(s) 863
BseMII CTCAG 5 cut(s) 366, 392, 686, 812, 824
BseNI ACTGG 4 cut(s) 275, 509, 862, 934
BseRI GAGGAG 2 cut(s) 26, 1037
BseSI GKGCMC 2 cut(s) 46, 70
BseYI CCCAGC 1 cut(s) 63
BshFI GGCC 4 cut(s) 68, 106, 174, 718
BshNI GGYRCC 2 cut(s) 41, 577
BslFI GGGAC 3 cut(s) 199, 946, 967
BslI CCNNNNNNNGG 5 cut(s) 107, 393, 662, 950, 1163
BsmAI GTCTC 2 cut(s) 48, 89
BsmFI GGGAC 3 cut(s) 199, 946, 967
BsmI GAATGC 1 cut(s) 1150
BsnI GGCC 4 cut(s) 68, 106, 174, 718
Bsp120I GGGCCC 1 cut(s) 66
Bsp1286I GDGCHC 2 cut(s) 46, 70
Bsp1407I TGTACA 1 cut(s) 1079
Bsp143I GATC 4 cut(s) 178, 432, 691, 1006
Bsp19I CCATGG 1 cut(s) 101
BspACI CCGC 1 cut(s) 849
BspANI GGCC 4 cut(s) 68, 106, 174, 718
BspCNI CTCAG 5 cut(s) 365, 393, 687, 811, 825
BspHI TCATGA 1 cut(s) 816
BspLI GGNNCC 4 cut(s) 43, 68, 398, 579
BspPI GGATC 2 cut(s) 173, 427
BspQI GCTCTTC 1 cut(s) 1100
BspT107I GGYRCC 2 cut(s) 41, 577
BspTI CTTAAG 1 cut(s) 391
BsrDI GCAATG 1 cut(s) 863
BsrGI TGTACA 1 cut(s) 1079
BsrI ACTGG 4 cut(s) 275, 509, 862, 934
BssECI CCNNGG 5 cut(s) 101, 315, 436, 437, 1173
BssMI GATC 4 cut(s) 178, 432, 691, 1006
BssT1I CCWWGG 3 cut(s) 101, 315, 1173
Bst2UI CCWGG 3 cut(s) 108, 438, 582
Bst4CI ACNGT 2 cut(s) 756, 937
Bst6I CTCTTC 3 cut(s) 963, 1040, 1100
BstAFI CTTAAG 1 cut(s) 391
BstAUI TGTACA 1 cut(s) 1079
BstC8I GCNNGC 2 cut(s) 187, 650
BstDEI CTNAG 8 cut(s) 352, 401, 463, 479, 695, 798, 833, 998
BstDSI CCRYGG 1 cut(s) 101
BstF5I GGATG 4 cut(s) 459, 606, 851, 1060
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 4 cut(s) 181, 435, 694, 1009
BstMAI GTCTC 2 cut(s) 48, 89
BstMBI GATC 4 cut(s) 178, 432, 691, 1006
BstMWI GCNNNNNNNGC 2 cut(s) 22, 820
BstNI CCWGG 3 cut(s) 108, 438, 582
BstNSI RCATGY 1 cut(s) 652
BstSCI CCNGG 3 cut(s) 106, 436, 580
BstSLI GKGCMC 2 cut(s) 46, 70
BstV2I GAAGAC 1 cut(s) 303
BstX2I RGATCY 2 cut(s) 432, 1006
BstYI RGATCY 2 cut(s) 432, 1006
BsuRI GGCC 4 cut(s) 68, 106, 174, 718
BtgI CCRYGG 1 cut(s) 101
BtsCI GGATG 4 cut(s) 459, 606, 851, 1060
BtsI GCAGTG 1 cut(s) 897
BtsIMutI CAGTG 2 cut(s) 830, 897
Cac8I GCNNGC 2 cut(s) 187, 650
CciI TCATGA 1 cut(s) 816
CfoI GCGC 1 cut(s) 307
Cfr13I GGNCC 7 cut(s) 66, 67, 173, 397, 716, 860, 1154
Csp6I GTAC 3 cut(s) 757, 1080, 1225
CspCI CAANNNNNGTGG 2 cut(s) 478, 513
CviAII CATG 9 cut(s) 87, 102, 152, 649, 817, 1215, 1254, 1275, 1306
CviQI GTAC 3 cut(s) 757, 1080, 1225
DdeI CTNAG 8 cut(s) 352, 401, 463, 479, 695, 798, 833, 998
DpnI GATC 4 cut(s) 180, 434, 693, 1008
DpnII GATC 4 cut(s) 178, 432, 691, 1006
DraI TTTAAA 1 cut(s) 969
Eam1104I CTCTTC 3 cut(s) 963, 1040, 1100
EarI CTCTTC 3 cut(s) 963, 1040, 1100
Eco130I CCWWGG 3 cut(s) 101, 315, 1173
Eco24I GRGCYC 1 cut(s) 70
Eco47I GGWCC 3 cut(s) 397, 860, 1154
Eco57I CTGAAG 1 cut(s) 584
EcoO109I RGGNCCY 1 cut(s) 397
EcoRI GAATTC 1 cut(s) 1270
EcoRII CCWGG 3 cut(s) 106, 436, 580
EcoT14I CCWWGG 3 cut(s) 101, 315, 1173
EcoT38I GRGCYC 1 cut(s) 70
ErhI CCWWGG 3 cut(s) 101, 315, 1173
FaeI CATG 9 cut(s) 90, 105, 155, 652, 820, 1218, 1257, 1278, 1309
FaqI GGGAC 3 cut(s) 199, 946, 967
FatI CATG 9 cut(s) 86, 101, 151, 648, 816, 1214, 1253, 1274, 1305
FauNDI CATATG 1 cut(s) 1261
FokI GGATG 4 cut(s) 466, 593, 858, 1067
FriOI GRGCYC 1 cut(s) 70
FspBI CTAG 4 cut(s) 50, 326, 425, 566
GlaI GCGC 1 cut(s) 306
GsaI CCCAGC 1 cut(s) 67
GsuI CTGGAG 3 cut(s) 43, 639, 927
HaeIII GGCC 4 cut(s) 68, 106, 174, 718
HhaI GCGC 1 cut(s) 307
Hin1II CATG 9 cut(s) 90, 105, 155, 652, 820, 1218, 1257, 1278, 1309
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HinfI GANTC 7 cut(s) 56, 97, 163, 212, 697, 955, 1196
HphI GGTGA 3 cut(s) 140, 264, 1193
Hpy166II GTNNAC 2 cut(s) 1154, 1184
Hpy188I TCNGA 5 cut(s) 211, 696, 1125, 1201, 1236
Hpy188III TCNNGA 9 cut(s) 354, 400, 566, 656, 817, 843, 911, 944, 1019
Hpy8I GTNNAC 2 cut(s) 1154, 1184
HpyAV CCTTC 2 cut(s) 56, 563
HpyCH4III ACNGT 2 cut(s) 756, 937
HpyCH4V TGCA 2 cut(s) 189, 1148
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 820
HpyF3I CTNAG 8 cut(s) 352, 401, 463, 479, 695, 798, 833, 998
Hsp92II CATG 9 cut(s) 90, 105, 155, 652, 820, 1218, 1257, 1278, 1309
HspAI GCGC 1 cut(s) 305
Kzo9I GATC 4 cut(s) 178, 432, 691, 1006
LguI GCTCTTC 1 cut(s) 1100
LmnI GCTCC 2 cut(s) 13, 745
LweI GCATC 1 cut(s) 836
MaeI CTAG 4 cut(s) 50, 326, 425, 566
MaeIII GTNAC 4 cut(s) 154, 277, 408, 482
MalI GATC 4 cut(s) 180, 434, 693, 1008
MboI GATC 4 cut(s) 178, 432, 691, 1006
MboII GAAGA 7 cut(s) 303, 873, 950, 1057, 1114, 1117, 1242
MfeI CAATTG 1 cut(s) 256
MflI RGATCY 2 cut(s) 432, 1006
MhlI GDGCHC 2 cut(s) 46, 70
MluCI AATT 8 cut(s) 256, 381, 490, 516, 749, 792, 979, 1270
MlyI GAGTC 6 cut(s) 50, 91, 221, 706, 949, 1205
MmeI TCCRAC 4 cut(s) 314, 411, 536, 1032
MseI TTAA 5 cut(s) 392, 494, 551, 623, 968
MslI CAYNNNNRTG 2 cut(s) 85, 1191
MspA1I CMGCKG 1 cut(s) 63
MspCI CTTAAG 1 cut(s) 391
MspR9I CCNGG 3 cut(s) 108, 438, 582
MunI CAATTG 1 cut(s) 256
Mva1269I GAATGC 1 cut(s) 1150
MvaI CCWGG 3 cut(s) 108, 438, 582
MwoI GCNNNNNNNGC 2 cut(s) 22, 820
NcoI CCATGG 1 cut(s) 101
NdeI CATATG 1 cut(s) 1261
NdeII GATC 4 cut(s) 178, 432, 691, 1006
NlaIII CATG 9 cut(s) 90, 105, 155, 652, 820, 1218, 1257, 1278, 1309
NlaIV GGNNCC 4 cut(s) 43, 68, 398, 579
NmuCI GTSAC 3 cut(s) 154, 277, 408
NspI RCATGY 1 cut(s) 652
PaeI GCATGC 1 cut(s) 652
PagI TCATGA 1 cut(s) 816
PasI CCCWGGG 1 cut(s) 437
PciSI GCTCTTC 1 cut(s) 1100
PctI GAATGC 1 cut(s) 1150
PfeI GAWTC 1 cut(s) 163
PflMI CCANNNNNTGG 2 cut(s) 107, 1163
PleI GAGTC 6 cut(s) 50, 91, 220, 705, 949, 1204
PpsI GAGTC 6 cut(s) 50, 91, 220, 705, 949, 1204
PpuMI RGGWCCY 1 cut(s) 397
Psp5II RGGWCCY 1 cut(s) 397
Psp6I CCWGG 3 cut(s) 106, 436, 580
PspFI CCCAGC 1 cut(s) 63
PspGI CCWGG 3 cut(s) 106, 436, 580
PspN4I GGNNCC 4 cut(s) 43, 68, 398, 579
PspOMI GGGCCC 1 cut(s) 66
PspPI GGNCC 7 cut(s) 66, 67, 173, 397, 716, 860, 1154
PspPPI RGGWCCY 1 cut(s) 397
PsuI RGATCY 2 cut(s) 432, 1006
PvuII CAGCTG 1 cut(s) 63
RsaI GTAC 3 cut(s) 758, 1081, 1226
RsaNI GTAC 3 cut(s) 757, 1080, 1225
RseI CAYNNNNRTG 2 cut(s) 85, 1191
SapI GCTCTTC 1 cut(s) 1100
SaqAI TTAA 5 cut(s) 392, 494, 551, 623, 968
Sau3AI GATC 4 cut(s) 178, 432, 691, 1006
Sau96I GGNCC 7 cut(s) 66, 67, 173, 397, 716, 860, 1154
ScaI AGTACT 1 cut(s) 758
SchI GAGTC 6 cut(s) 50, 91, 221, 706, 949, 1205
ScrFI CCNGG 3 cut(s) 108, 438, 582
SduI GDGCHC 2 cut(s) 46, 70
SfaNI GCATC 1 cut(s) 836
SinI GGWCC 3 cut(s) 397, 860, 1154
SmiMI CAYNNNNRTG 2 cut(s) 85, 1191
SmlI CTYRAG 1 cut(s) 391
SmoI CTYRAG 1 cut(s) 391
SphI GCATGC 1 cut(s) 652
Sse9I AATT 8 cut(s) 256, 381, 490, 516, 749, 792, 979, 1270
SsiI CCGC 1 cut(s) 849
SspMI CTAG 4 cut(s) 50, 326, 425, 566
StyD4I CCNGG 3 cut(s) 106, 436, 580
StyI CCWWGG 3 cut(s) 101, 315, 1173
TaaI ACNGT 2 cut(s) 756, 937
TasI AATT 8 cut(s) 256, 381, 490, 516, 749, 792, 979, 1270
TatI WGTACW 2 cut(s) 756, 1079
TfiI GAWTC 1 cut(s) 163
Tru1I TTAA 5 cut(s) 392, 494, 551, 623, 968
Tru9I TTAA 5 cut(s) 392, 494, 551, 623, 968
TscAI CASTG 2 cut(s) 837, 904
TseFI GTSAC 3 cut(s) 154, 277, 408
Tsp45I GTSAC 3 cut(s) 154, 277, 408
TspDTI ATGAA 8 cut(s) 140, 147, 833, 1018, 1223, 1242, 1263, 1278
TspRI CASTG 2 cut(s) 837, 904
Van91I CCANNNNNTGG 2 cut(s) 107, 1163
Vha464I CTTAAG 1 cut(s) 391
VpaK11BI GGWCC 3 cut(s) 397, 860, 1154
XapI RAATTY 4 cut(s) 381, 792, 979, 1270
XbaI TCTAGA 1 cut(s) 565
XceI RCATGY 1 cut(s) 652
XspI CTAG 4 cut(s) 50, 326, 425, 566
ZrmI AGTACT 1 cut(s) 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.