Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000422.1

Orthogroup ID

OG0016779

Physical Location & Seq

Genomic Coordinates Forward (+)

167574 .. 168938

Gene Structure 1365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000422.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

atgcctgactcagatgatgaggttccactagagatggaaaagaaggagcttttggggatttttgaggtaatgggtgcccttcttgaggactctgattggcctctagagcacccacaaccatgtactgagactcaatggcctggtgttctatgtgagattggggacgaagaccctccaatgtttcacgtcacaaagatacacattggccctgatattctcacccctccttgcaaatcatctgctactttatcagagtcccttctcaaactaccttacttgaaaaccctctcaatatttagttgcttttcaacatcacaagtcactctttctccaaagctctttggtgcattgtcttccttggaacacctagcccttgtgtccaatccaactctctcaggtgaaattccctcaagtttagcccaaatttccagcttaagggttctgactttgtcacagaacaatttacaaggaaaagtccctagtcagattggtgctttggtcagcttagagcaacttgacttgagttacaacaacttgagtggtcaaataccagacgaaattggagggttggagagtttgaccattttggatttaagtcagaatgttcttgaaggtcagctgccctcctcttttggtcagcttcaactcctccaaaagattgatttaagctcaaacaggcttcgaggtatgttgcctccagatatagggaagctcaacaggttggttttgcttgatctgagtcacaacttaataaatgggccaatccctgaaaccctttcaggtttgcagcatttagagtacatggtagctgatagcaacccaatcaagacagaagttcctaactttttagggaagctcatgaatctcaaaacactcagcttttcagaatgtgggttgataggcccattacccaactttctctcttccttgaagaatctcactgctctttgtctaagcaacaatagcctcactgggactgttcgtccaaatttggccactcttccaagtcttgatttactaaatttgagcaacaatcagttaagtggtgagctgacacttccagaagatttcattgagaggcttggaaagaggttggtgctaagaggaaacaatgggctatgtacaagcaatccactcaacaagaaggagaatatttctagccatgtgatagcccctctgtgtttgaatccaagagggcccagagatgaccagaccttggctggtgaacacccaactgagtctgagagagtgaagccattggatcaagaccctgtgcaggaaagttcatctacaggttcttcatggtcacatgtaaaactgaattcatttggttttgttttttgtttgttgagtatgttattgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0016020 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8

Protein Analysis

454

Amino Acids

49.36

Weight (kDa)

4.83

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016779)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g05310
malus_domestica	MD05G1281800.v1.1
prunus_persica	Prupe.4G082700_v2.0.a1
pyrus_communis	pycom05g26170
rosa_chinensis	RchiOBHm_Chr5g0014421
rosa_laevigata	RLG00000032107
rosa_multiflora	Rmu_ssc0000422.1_g000037
rosa_roxburghii	Rroxscaffold_1G00062160
rosa_rugosa	Rorug05G0017900
rosa_samantha	Rh5AG112800 Rh5BG109600 Rh5CG121400 Rh5DG108600
rosa_wichuraiana	Rw5G009790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	74
AccB7I	CCANNNNNTGG	1 cut(s)	1216
AclWI	GGATC	1 cut(s)	1269
AcoI	YGGCCR	1 cut(s)	993
AcsI	RAATTY	5 cut(s)	402, 423, 988, 1021, 1321
AfaI	GTAC	3 cut(s)	124, 800, 1123
AfiI	CCNNNNNNNGG	5 cut(s)	85, 435, 704, 1216, 1276
AflII	CTTAAG	1 cut(s)	433
AflIII	ACRYGT	1 cut(s)	1309
AgsI	TTSAA	6 cut(s)	280, 309, 611, 644, 931, 1186
AhdI	GACNNNNNGTC	1 cut(s)	981
AjiI	CACGTC	1 cut(s)	187
AjnI	CCWGG	1 cut(s)	139
AjuI	GAANNNNNNNTTGG	2 cut(s)	35, 67
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	1 cut(s)	1269
AoxI	GGCC	7 cut(s)	98, 137, 205, 758, 901, 993, 1196
ApaI	GGGCCC	1 cut(s)	1200
ApeKI	GCWGC	2 cut(s)	619, 787
ApoI	RAATTY	5 cut(s)	402, 423, 988, 1021, 1321
AspS9I	GGNCC	5 cut(s)	206, 758, 902, 1196, 1197
AsuHPI	GGTGA	4 cut(s)	211, 410, 1058, 1235
BaeGI	GKGCMC	2 cut(s)	79, 1200
BalI	TGGCCA	1 cut(s)	995
BanI	GGYRCC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	1200
BbsI	GAAGAC	2 cut(s)	174, 345
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	2 cut(s)	606, 799
BccI	CCATC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	5 cut(s)	29, 104, 368, 480, 1158
BfmI	CTRYAG	1 cut(s)	1290
BfrI	CTTAAG	1 cut(s)	433
BisI	GCNGC	2 cut(s)	620, 788
BlsI	GCNGC	2 cut(s)	621, 789
Bme1390I	CCNGG	1 cut(s)	141
BmeRI	GACNNNNNGTC	1 cut(s)	981
BmgBI	CACGTC	1 cut(s)	187
BmgT120I	GGNCC	5 cut(s)	206, 758, 902, 1196, 1197
BmiI	GGNNCC	3 cut(s)	24, 76, 1198
BmrFI	CCNGG	1 cut(s)	141
BmrI	ACTGGG	1 cut(s)	981
BmuI	ACTGGG	1 cut(s)	981
BpiI	GAAGAC	2 cut(s)	174, 345
BpmI	CTGGAG	1 cut(s)	681
BpuEI	CTTGAG	4 cut(s)	104, 394, 541, 556
BsaJI	CCNNGG	2 cut(s)	357, 1215
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bsc4I	CCNNNNNNNGG	5 cut(s)	85, 435, 704, 1216, 1276
Bse1I	ACTGG	1 cut(s)	976
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	2 cut(s)	357, 1215
BseLI	CCNNNNNNNGG	5 cut(s)	85, 435, 704, 1216, 1276
BseMII	CTCAG	7 cut(s)	24, 117, 408, 728, 889, 1227, 1233
BseNI	ACTGG	1 cut(s)	976
BseRI	GAGGAG	2 cut(s)	616, 638
BseSI	GKGCMC	2 cut(s)	79, 1200
BseXI	GCAGC	2 cut(s)	606, 799
BsgI	GTGCAG	1 cut(s)	1295
BshFI	GGCC	7 cut(s)	100, 139, 207, 760, 903, 995, 1198
BshNI	GGYRCC	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	111
BslFI	GGGAC	4 cut(s)	176, 241, 461, 988
BslI	CCNNNNNNNGG	5 cut(s)	85, 435, 704, 1216, 1276
BsmAI	GTCTC	1 cut(s)	122
BsmFI	GGGAC	4 cut(s)	176, 241, 461, 988
BsnI	GGCC	7 cut(s)	100, 139, 207, 760, 903, 995, 1198
Bsp120I	GGGCCC	1 cut(s)	1196
Bsp1286I	GDGCHC	3 cut(s)	79, 111, 1200
Bsp1407I	TGTACA	1 cut(s)	1121
Bsp143I	GATC	2 cut(s)	733, 1261
BspANI	GGCC	7 cut(s)	100, 139, 207, 760, 903, 995, 1198
BspCNI	CTCAG	7 cut(s)	23, 118, 407, 729, 888, 1228, 1234
BspHI	TCATGA	1 cut(s)	858
BspLI	GGNNCC	3 cut(s)	24, 76, 1198
BspPI	GGATC	1 cut(s)	1269
BspT107I	GGYRCC	1 cut(s)	74
BspTI	CTTAAG	1 cut(s)	433
BsrGI	TGTACA	1 cut(s)	1121
BsrI	ACTGG	1 cut(s)	976
BssECI	CCNNGG	2 cut(s)	357, 1215
BssMI	GATC	2 cut(s)	733, 1261
BssT1I	CCWWGG	2 cut(s)	357, 1215
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	1 cut(s)	979
Bst6I	CTCTTC	2 cut(s)	928, 1005
BstAFI	CTTAAG	1 cut(s)	433
BstAUI	TGTACA	1 cut(s)	1121
BstENI	CCTNNNNNAGG	1 cut(s)	83
BstKTI	GATC	2 cut(s)	736, 1264
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	2 cut(s)	733, 1261
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 963
BstNI	CCWGG	1 cut(s)	141
BstNSI	RCATGY	1 cut(s)	1313
BstSCI	CCNGG	1 cut(s)	139
BstSFI	CTRYAG	1 cut(s)	1290
BstSLI	GKGCMC	2 cut(s)	79, 1200
BstV1I	GCAGC	2 cut(s)	606, 799
BstV2I	GAAGAC	2 cut(s)	174, 345
BsuRI	GGCC	7 cut(s)	100, 139, 207, 760, 903, 995, 1198
BtrI	CACGTC	1 cut(s)	187
BtsI	GCAGTG	1 cut(s)	939
BtsIMutI	CAGTG	2 cut(s)	939, 969
CciI	TCATGA	1 cut(s)	858
Cfr13I	GGNCC	5 cut(s)	206, 758, 902, 1196, 1197
Csp6I	GTAC	3 cut(s)	123, 799, 1122
CspCI	CAANNNNNGTGG	2 cut(s)	520, 555
CviAII	CATG	6 cut(s)	120, 802, 859, 1163, 1302, 1310
CviQI	GTAC	3 cut(s)	123, 799, 1122
DpnI	GATC	2 cut(s)	735, 1263
DpnII	GATC	2 cut(s)	733, 1261
DriI	GACNNNNNGTC	1 cut(s)	981
EaeI	YGGCCR	1 cut(s)	993
Eam1104I	CTCTTC	2 cut(s)	928, 1005
Eam1105I	GACNNNNNGTC	1 cut(s)	981
EarI	CTCTTC	2 cut(s)	928, 1005
Eco130I	CCWWGG	2 cut(s)	357, 1215
Eco24I	GRGCYC	1 cut(s)	1200
EcoNI	CCTNNNNNAGG	1 cut(s)	83
EcoO109I	RGGNCCY	1 cut(s)	1196
EcoRI	GAATTC	1 cut(s)	1321
EcoRII	CCWGG	1 cut(s)	139
EcoT14I	CCWWGG	2 cut(s)	357, 1215
EcoT38I	GRGCYC	1 cut(s)	1200
ErhI	CCWWGG	2 cut(s)	357, 1215
FaeI	CATG	6 cut(s)	123, 805, 862, 1166, 1305, 1313
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	4 cut(s)	176, 241, 461, 988
FatI	CATG	6 cut(s)	119, 801, 858, 1162, 1301, 1309
Fnu4HI	GCNGC	2 cut(s)	620, 788
FriOI	GRGCYC	1 cut(s)	1200
Fsp4HI	GCNGC	2 cut(s)	620, 788
FspBI	CTAG	5 cut(s)	29, 104, 368, 480, 1158
GluI	GCNGC	2 cut(s)	620, 788
GsuI	CTGGAG	1 cut(s)	681
HaeIII	GGCC	7 cut(s)	100, 139, 207, 760, 903, 995, 1198
Hin1II	CATG	6 cut(s)	123, 805, 862, 1166, 1305, 1313
HinfI	GANTC	9 cut(s)	8, 89, 130, 254, 739, 862, 934, 1186, 1238
HphI	GGTGA	4 cut(s)	211, 410, 1058, 1235
Hpy166II	GTNNAC	1 cut(s)	1226
Hpy188I	TCNGA	9 cut(s)	13, 94, 253, 444, 486, 600, 738, 886, 1243
Hpy188III	TCNNGA	9 cut(s)	83, 104, 608, 698, 826, 859, 1010, 1061, 1265
Hpy8I	GTNNAC	1 cut(s)	1226
HpyAV	CCTTC	5 cut(s)	37, 89, 269, 605, 1138
HpyCH4III	ACNGT	1 cut(s)	979
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	4 cut(s)	231, 347, 787, 1276
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 963
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	6 cut(s)	123, 805, 862, 1166, 1305, 1313
Kzo9I	GATC	2 cut(s)	733, 1261
LmnI	GCTCC	1 cut(s)	46
Lsp1109I	GCAGC	2 cut(s)	606, 799
MaeI	CTAG	5 cut(s)	29, 104, 368, 480, 1158
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	6 cut(s)	187, 319, 450, 524, 740, 1305
MalI	GATC	2 cut(s)	735, 1263
MboI	GATC	2 cut(s)	733, 1261
MboII	GAAGA	7 cut(s)	179, 345, 915, 943, 992, 1076, 1290
MhlI	GDGCHC	3 cut(s)	79, 111, 1200
MlsI	TGGCCA	1 cut(s)	995
MluCI	AATT	7 cut(s)	402, 423, 460, 558, 988, 1021, 1321
MluNI	TGGCCA	1 cut(s)	995
MlyI	GAGTC	6 cut(s)	2, 83, 124, 263, 748, 1247
MmeI	TCCRAC	2 cut(s)	410, 549
Mox20I	TGGCCA	1 cut(s)	995
MscI	TGGCCA	1 cut(s)	995
MseI	TTAA	5 cut(s)	434, 593, 665, 749, 1040
MslI	CAYNNNNRTG	1 cut(s)	118
Msp20I	TGGCCA	1 cut(s)	995
MspA1I	CMGCKG	1 cut(s)	619
MspCI	CTTAAG	1 cut(s)	433
MspR9I	CCNGG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	106, 963
NdeII	GATC	2 cut(s)	733, 1261
NlaIII	CATG	6 cut(s)	123, 805, 862, 1166, 1305, 1313
NlaIV	GGNNCC	3 cut(s)	24, 76, 1198
NmuCI	GTSAC	5 cut(s)	187, 319, 450, 740, 1305
NspI	RCATGY	1 cut(s)	1313
PagI	TCATGA	1 cut(s)	858
PciI	ACATGT	1 cut(s)	1309
PfeI	GAWTC	3 cut(s)	862, 934, 1186
PflFI	GACNNNGTC	1 cut(s)	448
PflMI	CCANNNNNTGG	1 cut(s)	1216
PkrI	GCNGC	2 cut(s)	621, 789
PleI	GAGTC	6 cut(s)	2, 83, 124, 262, 747, 1246
PpsI	GAGTC	6 cut(s)	2, 83, 124, 262, 747, 1246
PscI	ACATGT	1 cut(s)	1309
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	3 cut(s)	24, 76, 1198
PspOMI	GGGCCC	1 cut(s)	1196
PspPI	GGNCC	5 cut(s)	206, 758, 902, 1196, 1197
PsyI	GACNNNGTC	1 cut(s)	448
PvuII	CAGCTG	1 cut(s)	619
RsaI	GTAC	3 cut(s)	124, 800, 1123
RsaNI	GTAC	3 cut(s)	123, 799, 1122
RseI	CAYNNNNRTG	1 cut(s)	118
SaqAI	TTAA	5 cut(s)	434, 593, 665, 749, 1040
SatI	GCNGC	2 cut(s)	620, 788
Sau3AI	GATC	2 cut(s)	733, 1261
Sau96I	GGNCC	5 cut(s)	206, 758, 902, 1196, 1197
SchI	GAGTC	6 cut(s)	2, 83, 124, 263, 748, 1247
ScrFI	CCNGG	1 cut(s)	141
SduI	GDGCHC	3 cut(s)	79, 111, 1200
SfcI	CTRYAG	1 cut(s)	1290
SmiMI	CAYNNNNRTG	1 cut(s)	118
SmlI	CTYRAG	5 cut(s)	83, 409, 433, 520, 535
SmoI	CTYRAG	5 cut(s)	83, 409, 433, 520, 535
Sse9I	AATT	7 cut(s)	402, 423, 460, 558, 988, 1021, 1321
SspI	AATATT	2 cut(s)	294, 1153
SspMI	CTAG	5 cut(s)	29, 104, 368, 480, 1158
StyD4I	CCNGG	1 cut(s)	139
StyI	CCWWGG	2 cut(s)	357, 1215
TaaI	ACNGT	1 cut(s)	979
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	1 cut(s)	682
TasI	AATT	7 cut(s)	402, 423, 460, 558, 988, 1021, 1321
TatI	WGTACW	3 cut(s)	122, 798, 1121
TfiI	GAWTC	3 cut(s)	862, 934, 1186
Tru1I	TTAA	5 cut(s)	434, 593, 665, 749, 1040
Tru9I	TTAA	5 cut(s)	434, 593, 665, 749, 1040
TscAI	CASTG	2 cut(s)	946, 976
TseFI	GTSAC	5 cut(s)	187, 319, 450, 740, 1305
TseI	GCWGC	2 cut(s)	619, 787
Tsp45I	GTSAC	5 cut(s)	187, 319, 450, 740, 1305
TspDTI	ATGAA	5 cut(s)	875, 1060, 1275, 1290, 1314
TspRI	CASTG	2 cut(s)	946, 976
Tth111I	GACNNNGTC	1 cut(s)	448
Van91I	CCANNNNNTGG	1 cut(s)	1216
Vha464I	CTTAAG	1 cut(s)	433
XagI	CCTNNNNNAGG	1 cut(s)	83
XapI	RAATTY	5 cut(s)	402, 423, 988, 1021, 1321
XbaI	TCTAGA	1 cut(s)	103
XceI	RCATGY	1 cut(s)	1313
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1217
XspI	CTAG	5 cut(s)	29, 104, 368, 480, 1158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.