Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0016779

Physical Location & Seq

Genomic Coordinates Forward (+)

84190702 .. 84192138

Gene Structure 1437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00062160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGGCTTTTTCTTCTTCTGTGTGTCTTTTCCTTGTTGGGTTTCTTGTTTTTGCAGGGAAATTGCTTGCTGAAATGCCCGACTCAGATGATAAGGTTCCACTAGAGATGGAAAAGAAGGAGCTTTTGGGCATTTTTGAGGTAATGGGTGCCCTTCTTGAGGACTCTGATTGGCCTCTAGAGCACCCACAACCATGTACTGAGACTCAATGGCCCGGTGTTCAATGTGAGATTGGGGACGAAGACCCTCCAATGTTTCATGTCACTAAGATACACATTGGCCCTGATATTCTAACCCCTCCTTGCAAATCATCTGCTACTTTATCAGAGTCCCTTCTCAAACTACCTTACTTGAAAACCCTCTCAATATTTAGTTGCTTTTCGACATCACAGGTCACTCTTTCTCCAAAGCTCTTTGGTGCATTGTCTTCCTTGGAACACCTAGCCCTTGTGTCCAATCCAACTCTCTCAGGTGAAATTCCCTCAAGTTTAGCCCAAATTTCCAGCTTAAGGGTTCTGACTTTGTCACAGAACAATTTACAAGGAAAAGTCCCTAGTAAGATTGGTGCTTTGGTCAGCTTAGAGCAACTTGACTTGAGTTACAACAACTTGAGTGGTCAAATACCAGAAGAAATTGGAGGGTTGGCGAGTTTGACCATTTTGGATTTAAGTCAGAATGTTCTTGAAGGTCAGCTGCCCTCCTCTTTTGGTCAGCTTCAACTCCTCCAAAAGATTGATTTAAGCTCAAACAGGCTTGGAGGTATGTTGCCTCCAGATATAGGGAAGCTCAACAGGTTGGTTTTGCTTGATCTGAGTCACAACTTAATAAATGGGCCAATCCCTGAAACCCTTTCAGGTTTGCAGCATTTAGAGTACATGGTAGCTGATAGCAACCCAATCAAGACAGAAGTTCCTAACTTTGTTGGGAAGCTCATGAATCTCAAAACACTCAGCTTTTCAGAATGTGGGTTGATAGGCCCATTACCCAACTTTCTCTCTTCCTTGAAGAATCTCACTGCTCTTTCTCTAAGCAACAATAGCCTCACTGGGACAGTTCGTCCAAATTTGGGCACTCTTCCAAGTCTTGATTTACTAAATTTGAGCAACAATCAGTTAAGTGGTGAGCTGACACTTCCAGAAGATTTCATTGAGAGGCTTGGGAAGAGGTTGGTGCTAAGAGGAAACAATGGGCTATGTACAAGCAATCCACTCAACAAGAAGGAGAATATTTCTAGCCATGTGATAGCCCCTCTGTGTTTGAATCCAAGAGGGCCCAGAGATGACCAGACCTTGGCTGGTGAACACCCTACTGAGTCTGAGAGAGTGAAGCCATTGGATCAAGACCCTGTGCAGGAAAGTTCATCTACAGGTTCTTCATGGTCAAATGTAAAACTGAATTCATTTGGTTTTGTTTTTTGTTTCTTGAGTATGTTATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0016020 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8

Protein Analysis

478

Amino Acids

51.73

Weight (kDa)

4.93

Isoelectric Point (pI)

39.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	162 - 203	7.1e-06	Leucine rich repeat
LRR_14	PF23598	162 - 246	2.6e-10	Leucine-rich repeat region
LRR_8	PF13855	168 - 227	2.4e-09	Leucine rich repeat
LRR_4	PF12799	168 - 208	1e-05	Leucine Rich repeats (2 copies)
LRR_8	PF13855	192 - 251	6.1e-08	Leucine rich repeat
LRR_8	PF13855	241 - 299	4e-07	Leucine rich repeat
LRR_14	PF23598	254 - 340	1.9e-08	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016779)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g05310
malus_domestica	MD05G1281800.v1.1
prunus_persica	Prupe.4G082700_v2.0.a1
pyrus_communis	pycom05g26170
rosa_chinensis	RchiOBHm_Chr5g0014421
rosa_laevigata	RLG00000032107
rosa_multiflora	Rmu_ssc0000422.1_g000037
rosa_roxburghii	Rroxscaffold_1G00062160
rosa_rugosa	Rorug05G0017900
rosa_samantha	Rh5AG112800 Rh5BG109600 Rh5CG121400 Rh5DG108600
rosa_wichuraiana	Rw5G009790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	146
AccB7I	CCANNNNNTGG	1 cut(s)	1288
AclWI	GGATC	1 cut(s)	1341
AcsI	RAATTY	5 cut(s)	474, 495, 1060, 1093, 1393
AfaI	GTAC	3 cut(s)	196, 872, 1195
AfiI	CCNNNNNNNGG	6 cut(s)	157, 507, 776, 1064, 1288, 1348
AflII	CTTAAG	1 cut(s)	505
AgsI	TTSAA	6 cut(s)	221, 352, 683, 716, 1003, 1258
AhdI	GACNNNNNGTC	1 cut(s)	1053
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	1 cut(s)	1341
AoxI	GGCC	6 cut(s)	170, 209, 277, 830, 973, 1268
ApaI	GGGCCC	1 cut(s)	1272
ApeKI	GCWGC	2 cut(s)	691, 859
ApoI	RAATTY	5 cut(s)	474, 495, 1060, 1093, 1393
AspS9I	GGNCC	6 cut(s)	210, 278, 830, 974, 1268, 1269
AsuC2I	CCSGG	1 cut(s)	213
AsuHPI	GGTGA	3 cut(s)	482, 1130, 1307
BaeGI	GKGCMC	3 cut(s)	151, 1070, 1272
BanI	GGYRCC	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	1272
BbsI	GAAGAC	2 cut(s)	246, 417
Bbv12I	GWGCWC	1 cut(s)	183
BbvI	GCAGC	2 cut(s)	678, 871
BccI	CCATC	1 cut(s)	100
BcnI	CCSGG	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	5 cut(s)	101, 176, 440, 552, 1230
BfmI	CTRYAG	1 cut(s)	1362
BfrI	CTTAAG	1 cut(s)	505
BisI	GCNGC	2 cut(s)	692, 860
BlsI	GCNGC	2 cut(s)	693, 861
Bme1390I	CCNGG	1 cut(s)	213
BmeRI	GACNNNNNGTC	1 cut(s)	1053
BmgT120I	GGNCC	6 cut(s)	210, 278, 830, 974, 1268, 1269
BmiI	GGNNCC	3 cut(s)	96, 148, 1270
BmrFI	CCNGG	1 cut(s)	213
BmrI	ACTGGG	1 cut(s)	1053
BmuI	ACTGGG	1 cut(s)	1053
BpiI	GAAGAC	2 cut(s)	246, 417
BpmI	CTGGAG	1 cut(s)	753
BpuEI	CTTGAG	4 cut(s)	176, 466, 613, 628
BpuMI	CCSGG	1 cut(s)	213
BsaJI	CCNNGG	2 cut(s)	429, 1287
BsaXI	ACNNNNNCTCC	2 cut(s)	385, 415
Bsc4I	CCNNNNNNNGG	6 cut(s)	157, 507, 776, 1064, 1288, 1348
Bse1I	ACTGG	1 cut(s)	1048
BseDI	CCNNGG	2 cut(s)	429, 1287
BseLI	CCNNNNNNNGG	6 cut(s)	157, 507, 776, 1064, 1288, 1348
BseMII	CTCAG	7 cut(s)	96, 189, 480, 800, 961, 1299, 1305
BseNI	ACTGG	1 cut(s)	1048
BseRI	GAGGAG	2 cut(s)	688, 710
BseSI	GKGCMC	3 cut(s)	151, 1070, 1272
BseXI	GCAGC	2 cut(s)	678, 871
BsgI	GTGCAG	1 cut(s)	1367
BshFI	GGCC	6 cut(s)	172, 211, 279, 832, 975, 1270
BshNI	GGYRCC	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	183
BsiSI	CCGG	1 cut(s)	213
BslFI	GGGAC	4 cut(s)	248, 313, 533, 1060
BslI	CCNNNNNNNGG	6 cut(s)	157, 507, 776, 1064, 1288, 1348
BsmAI	GTCTC	1 cut(s)	194
BsmFI	GGGAC	4 cut(s)	248, 313, 533, 1060
BsnI	GGCC	6 cut(s)	172, 211, 279, 832, 975, 1270
Bsp120I	GGGCCC	1 cut(s)	1268
Bsp1286I	GDGCHC	4 cut(s)	151, 183, 1070, 1272
Bsp1407I	TGTACA	1 cut(s)	1193
Bsp143I	GATC	2 cut(s)	805, 1333
BspANI	GGCC	6 cut(s)	172, 211, 279, 832, 975, 1270
BspCNI	CTCAG	7 cut(s)	95, 190, 479, 801, 960, 1300, 1306
BspHI	TCATGA	1 cut(s)	930
BspLI	GGNNCC	3 cut(s)	96, 148, 1270
BspPI	GGATC	1 cut(s)	1341
BspT107I	GGYRCC	1 cut(s)	146
BspTI	CTTAAG	1 cut(s)	505
BsrGI	TGTACA	1 cut(s)	1193
BsrI	ACTGG	1 cut(s)	1048
BssECI	CCNNGG	2 cut(s)	429, 1287
BssMI	GATC	2 cut(s)	805, 1333
BssT1I	CCWWGG	2 cut(s)	429, 1287
Bst4CI	ACNGT	1 cut(s)	1051
Bst6I	CTCTTC	3 cut(s)	1000, 1077, 1154
BstAFI	CTTAAG	1 cut(s)	505
BstAUI	TGTACA	1 cut(s)	1193
BstC8I	GCNNGC	1 cut(s)	66
BstENI	CCTNNNNNAGG	1 cut(s)	155
BstKTI	GATC	2 cut(s)	808, 1336
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	2 cut(s)	805, 1333
BstMWI	GCNNNNNNNGC	2 cut(s)	178, 1035
BstSCI	CCNGG	1 cut(s)	211
BstSFI	CTRYAG	1 cut(s)	1362
BstSLI	GKGCMC	3 cut(s)	151, 1070, 1272
BstV1I	GCAGC	2 cut(s)	678, 871
BstV2I	GAAGAC	2 cut(s)	246, 417
BsuRI	GGCC	6 cut(s)	172, 211, 279, 832, 975, 1270
BtsI	GCAGTG	1 cut(s)	1011
BtsIMutI	CAGTG	2 cut(s)	1011, 1041
Cac8I	GCNNGC	1 cut(s)	66
CciI	TCATGA	1 cut(s)	930
Cfr13I	GGNCC	6 cut(s)	210, 278, 830, 974, 1268, 1269
Csp6I	GTAC	3 cut(s)	195, 871, 1194
CspCI	CAANNNNNGTGG	2 cut(s)	592, 627
CviAII	CATG	6 cut(s)	192, 257, 874, 931, 1235, 1374
CviQI	GTAC	3 cut(s)	195, 871, 1194
DpnI	GATC	2 cut(s)	807, 1335
DpnII	GATC	2 cut(s)	805, 1333
DriI	GACNNNNNGTC	1 cut(s)	1053
Eam1104I	CTCTTC	3 cut(s)	1000, 1077, 1154
Eam1105I	GACNNNNNGTC	1 cut(s)	1053
EarI	CTCTTC	3 cut(s)	1000, 1077, 1154
Eco130I	CCWWGG	2 cut(s)	429, 1287
Eco24I	GRGCYC	1 cut(s)	1272
EcoNI	CCTNNNNNAGG	1 cut(s)	155
EcoO109I	RGGNCCY	1 cut(s)	1268
EcoRI	GAATTC	1 cut(s)	1393
EcoT14I	CCWWGG	2 cut(s)	429, 1287
EcoT38I	GRGCYC	1 cut(s)	1272
ErhI	CCWWGG	2 cut(s)	429, 1287
FaeI	CATG	6 cut(s)	195, 260, 877, 934, 1238, 1377
FaqI	GGGAC	4 cut(s)	248, 313, 533, 1060
FatI	CATG	6 cut(s)	191, 256, 873, 930, 1234, 1373
Fnu4HI	GCNGC	2 cut(s)	692, 860
FriOI	GRGCYC	1 cut(s)	1272
Fsp4HI	GCNGC	2 cut(s)	692, 860
FspBI	CTAG	5 cut(s)	101, 176, 440, 552, 1230
GluI	GCNGC	2 cut(s)	692, 860
GsuI	CTGGAG	1 cut(s)	753
HaeIII	GGCC	6 cut(s)	172, 211, 279, 832, 975, 1270
HapII	CCGG	1 cut(s)	213
Hin1II	CATG	6 cut(s)	195, 260, 877, 934, 1238, 1377
HinfI	GANTC	9 cut(s)	80, 161, 202, 326, 811, 934, 1006, 1258, 1310
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	3 cut(s)	482, 1130, 1307
Hpy166II	GTNNAC	1 cut(s)	1298
Hpy188I	TCNGA	8 cut(s)	85, 166, 325, 516, 672, 810, 958, 1315
Hpy8I	GTNNAC	1 cut(s)	1298
HpyAV	CCTTC	5 cut(s)	109, 161, 341, 677, 1210
HpyCH4III	ACNGT	1 cut(s)	1051
HpyCH4V	TGCA	5 cut(s)	53, 303, 419, 859, 1348
HpyF10VI	GCNNNNNNNGC	2 cut(s)	178, 1035
Hsp92II	CATG	6 cut(s)	195, 260, 877, 934, 1238, 1377
Kzo9I	GATC	2 cut(s)	805, 1333
LmnI	GCTCC	1 cut(s)	118
Lsp1109I	GCAGC	2 cut(s)	678, 871
MaeI	CTAG	5 cut(s)	101, 176, 440, 552, 1230
MaeIII	GTNAC	5 cut(s)	259, 391, 522, 596, 812
MalI	GATC	2 cut(s)	807, 1335
MboI	GATC	2 cut(s)	805, 1333
MhlI	GDGCHC	4 cut(s)	151, 183, 1070, 1272
MluCI	AATT	8 cut(s)	59, 474, 495, 532, 630, 1060, 1093, 1393
MlyI	GAGTC	6 cut(s)	74, 155, 196, 335, 820, 1319
MmeI	TCCRAC	1 cut(s)	482
MseI	TTAA	5 cut(s)	506, 665, 737, 821, 1112
MslI	CAYNNNNRTG	1 cut(s)	190
MspA1I	CMGCKG	1 cut(s)	691
MspCI	CTTAAG	1 cut(s)	505
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	2 cut(s)	178, 1035
NciI	CCSGG	1 cut(s)	213
NdeII	GATC	2 cut(s)	805, 1333
NlaIII	CATG	6 cut(s)	195, 260, 877, 934, 1238, 1377
NlaIV	GGNNCC	3 cut(s)	96, 148, 1270
NmuCI	GTSAC	4 cut(s)	259, 391, 522, 812
PagI	TCATGA	1 cut(s)	930
PfeI	GAWTC	3 cut(s)	934, 1006, 1258
PflFI	GACNNNGTC	1 cut(s)	520
PflMI	CCANNNNNTGG	1 cut(s)	1288
PkrI	GCNGC	2 cut(s)	693, 861
PleI	GAGTC	6 cut(s)	74, 155, 196, 334, 819, 1318
PpsI	GAGTC	6 cut(s)	74, 155, 196, 334, 819, 1318
PspN4I	GGNNCC	3 cut(s)	96, 148, 1270
PspOMI	GGGCCC	1 cut(s)	1268
PspPI	GGNCC	6 cut(s)	210, 278, 830, 974, 1268, 1269
PsyI	GACNNNGTC	1 cut(s)	520
PvuII	CAGCTG	1 cut(s)	691
RsaI	GTAC	3 cut(s)	196, 872, 1195
RsaNI	GTAC	3 cut(s)	195, 871, 1194
RseI	CAYNNNNRTG	1 cut(s)	190
SaqAI	TTAA	5 cut(s)	506, 665, 737, 821, 1112
SatI	GCNGC	2 cut(s)	692, 860
Sau3AI	GATC	2 cut(s)	805, 1333
Sau96I	GGNCC	6 cut(s)	210, 278, 830, 974, 1268, 1269
SchI	GAGTC	6 cut(s)	74, 155, 196, 335, 820, 1319
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	4 cut(s)	151, 183, 1070, 1272
SfcI	CTRYAG	1 cut(s)	1362
SmiMI	CAYNNNNRTG	1 cut(s)	190
SmlI	CTYRAG	6 cut(s)	155, 481, 505, 592, 607, 1420
SmoI	CTYRAG	6 cut(s)	155, 481, 505, 592, 607, 1420
Sse9I	AATT	8 cut(s)	59, 474, 495, 532, 630, 1060, 1093, 1393
SspI	AATATT	2 cut(s)	366, 1225
SspMI	CTAG	5 cut(s)	101, 176, 440, 552, 1230
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	2 cut(s)	429, 1287
TaaI	ACNGT	1 cut(s)	1051
TaqI	TCGA	1 cut(s)	380
TasI	AATT	8 cut(s)	59, 474, 495, 532, 630, 1060, 1093, 1393
TatI	WGTACW	3 cut(s)	194, 870, 1193
TfiI	GAWTC	3 cut(s)	934, 1006, 1258
Tru1I	TTAA	5 cut(s)	506, 665, 737, 821, 1112
Tru9I	TTAA	5 cut(s)	506, 665, 737, 821, 1112
TscAI	CASTG	2 cut(s)	1018, 1048
TseFI	GTSAC	4 cut(s)	259, 391, 522, 812
TseI	GCWGC	2 cut(s)	691, 859
Tsp45I	GTSAC	4 cut(s)	259, 391, 522, 812
TspDTI	ATGAA	6 cut(s)	245, 947, 1132, 1347, 1362, 1386
TspRI	CASTG	2 cut(s)	1018, 1048
Tth111I	GACNNNGTC	1 cut(s)	520
Van91I	CCANNNNNTGG	1 cut(s)	1288
Vha464I	CTTAAG	1 cut(s)	505
XagI	CCTNNNNNAGG	1 cut(s)	155
XapI	RAATTY	5 cut(s)	474, 495, 1060, 1093, 1393
XbaI	TCTAGA	1 cut(s)	175
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1289
XspI	CTAG	5 cut(s)	101, 176, 440, 552, 1230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.