pycom05g26170

Leucine Rich Repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0016779
Physical Location & Seq
Forward (+)
27441286 .. 27442250
965 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g26170.2

Sequence Viewer

Length: 798 bp
ATGGCTTTTTTGCCTCTTTTCCTTGTTGGGTTTCTTGTTTTGGGAGGGGGCTTGATTTCAGGGCAGCAAAACTCAGATGGGATTATGGAAAGGGAGGAGCTTTTGGGACTTTTTGAAGCTTTGGGTGGCCTTCTGGAGGACCCCAGCTGGGCCCAAGAGCACCCACAGCCCTGTGATGAGACTCCATGGCCTGGTATTCAATGTGAAATTGGTGATGAAAATCCTCCAACTTTTCATGTCACAAAGATTCACATTGGCCCTGACATTCTCACCCCTCCTTGCAAATCCTCTGCTTCCCTTTCAAGTTCCCTCCTCAAATTACCCTACTTGAAAACCCTCTCAATTTTCAATTGCTTTTTAACTACACCAGTCACTCTCTCTCCATCACTATTTGGTGCATTGTCTTCCTTGGAAACCCTAGCCCTTGTTTCCAATCCAGCTCTCTCAGGAGAAATCCCCCCAAACTTGTCAAAACTTACAAACTTAAGGGTCCTCAGCCTCTCACAGAACAACCTACAAGGAAACATCCCTAGGGAAATTGGTGGGTTGGTGAGACTAGAGCAGCTTGACCTAAGTTACAACAACCTAAGTGGTGAAATCCCACAAGAAATTGGAGGGTTGGGGAGTTTGACAATCTTGGATTTGAGCTGGAATGTTCTAGAAGGTCAGGTGCCTAACTCTGTAGGGCAGCTTCAAGTCCTCCAAAAGATTGATATGAGCTCCAACAGGCTGAGAGGATTGATCCCTCCAAATGTAGGGCAGCTCAAGAGGATGTGGGTTGATTGGCAAATTACCTAA

Protein Analysis

266

Amino Acids

28.71

Weight (kDa)

4.64

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016779)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g05310
malus_domestica MD05G1281800.v1.1
prunus_persica Prupe.4G082700_v2.0.a1
pyrus_communis pycom05g26170
rosa_chinensis RchiOBHm_Chr5g0014421
rosa_laevigata RLG00000032107
rosa_multiflora Rmu_ssc0000422.1_g000037
rosa_roxburghii Rroxscaffold_1G00062160
rosa_rugosa Rorug05G0017900
rosa_samantha Rh5AG112800 Rh5BG109600 Rh5CG121400 Rh5DG108600
rosa_wichuraiana Rw5G009790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 670
AccB7I CCANNNNNTGG 1 cut(s) 191
AclWI GGATC 1 cut(s) 736
AfiI CCNNNNNNNGG 4 cut(s) 136, 148, 191, 755
AflII CTTAAG 1 cut(s) 484
AgsI TTSAA 6 cut(s) 116, 200, 303, 331, 349, 695
AjnI CCWGG 1 cut(s) 190
AluBI AGCT 9 cut(s) 100, 119, 147, 440, 565, 648, 691, 720, 763
AluI AGCT 9 cut(s) 100, 119, 147, 440, 565, 648, 691, 720, 763
Alw21I GWGCWC 2 cut(s) 162, 722
Alw26I GTCTC 2 cut(s) 173, 547
AlwI GGATC 1 cut(s) 736
AoxI GGCC 4 cut(s) 127, 150, 188, 256
ApaI GGGCCC 1 cut(s) 154
ApeKI GCWGC 4 cut(s) 64, 562, 688, 760
AspA2I CCTAGG 1 cut(s) 530
AspS9I GGNCC 5 cut(s) 139, 150, 151, 257, 490
AsuHPI GGTGA 4 cut(s) 224, 262, 562, 605
AvaII GGWCC 2 cut(s) 139, 490
AvrII CCTAGG 1 cut(s) 530
BaeGI GKGCMC 1 cut(s) 154
BanI GGYRCC 1 cut(s) 670
BanII GRGCYC 2 cut(s) 154, 722
BarI GAAGNNNNNNTAC 2 cut(s) 675, 707
BbsI GAAGAC 1 cut(s) 396
Bbv12I GWGCWC 2 cut(s) 162, 722
BbvCI CCTCAGC 1 cut(s) 494
BbvI GCAGC 4 cut(s) 76, 574, 700, 772
BccI CCATC 2 cut(s) 71, 391
BciT130I CCWGG 1 cut(s) 192
BcoDI GTCTC 2 cut(s) 173, 547
BfaI CTAG 4 cut(s) 419, 531, 557, 659
BfmI CTRYAG 1 cut(s) 681
BfrI CTTAAG 1 cut(s) 484
BisI GCNGC 4 cut(s) 65, 563, 689, 761
BlnI CCTAGG 1 cut(s) 530
BlsI GCNGC 4 cut(s) 66, 564, 690, 762
Bme1390I CCNGG 1 cut(s) 192
Bme18I GGWCC 2 cut(s) 139, 490
BmgT120I GGNCC 5 cut(s) 139, 150, 151, 257, 490
BmiI GGNNCC 4 cut(s) 141, 152, 491, 672
BmrFI CCNGG 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 396
BpmI CTGGAG 1 cut(s) 155
Bpu10I CCTNAGC 1 cut(s) 494
BpuEI CTTGAG 1 cut(s) 749
BsaBI GATNNNNATC 1 cut(s) 219
BsaJI CCNNGG 3 cut(s) 185, 408, 530
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bsc4I CCNNNNNNNGG 4 cut(s) 136, 148, 191, 755
Bse1I ACTGG 1 cut(s) 368
Bse8I GATNNNNATC 1 cut(s) 219
BseBI CCWGG 1 cut(s) 192
BseDI CCNNGG 3 cut(s) 185, 408, 530
BseGI GGATG 2 cut(s) 525, 777
BseJI GATNNNNATC 1 cut(s) 219
BseLI CCNNNNNNNGG 4 cut(s) 136, 148, 191, 755
BseMII CTCAG 4 cut(s) 87, 459, 508, 722
BseNI ACTGG 1 cut(s) 368
BseRI GAGGAG 2 cut(s) 110, 302
BseSI GKGCMC 1 cut(s) 154
BseXI GCAGC 4 cut(s) 76, 574, 700, 772
BseYI CCCAGC 2 cut(s) 143, 147
BshFI GGCC 4 cut(s) 129, 152, 190, 258
BshNI GGYRCC 1 cut(s) 670
BsiHKAI GWGCWC 2 cut(s) 162, 722
BslFI GGGAC 1 cut(s) 120
BslI CCNNNNNNNGG 4 cut(s) 136, 148, 191, 755
BsmAI GTCTC 2 cut(s) 173, 547
BsmFI GGGAC 1 cut(s) 120
BsnI GGCC 4 cut(s) 129, 152, 190, 258
Bsp120I GGGCCC 1 cut(s) 150
Bsp1286I GDGCHC 3 cut(s) 154, 162, 722
Bsp143I GATC 1 cut(s) 741
Bsp19I CCATGG 1 cut(s) 185
BspANI GGCC 4 cut(s) 129, 152, 190, 258
BspCNI CTCAG 4 cut(s) 86, 458, 507, 723
BspLI GGNNCC 4 cut(s) 141, 152, 491, 672
BspPI GGATC 1 cut(s) 736
BspT107I GGYRCC 1 cut(s) 670
BspTI CTTAAG 1 cut(s) 484
BsrI ACTGG 1 cut(s) 368
BssECI CCNNGG 3 cut(s) 185, 408, 530
BssMI GATC 1 cut(s) 741
BssT1I CCWWGG 3 cut(s) 185, 408, 530
Bst2UI CCWGG 1 cut(s) 192
BstAFI CTTAAG 1 cut(s) 484
BstDEI CTNAG 6 cut(s) 73, 445, 494, 572, 587, 731
BstDSI CCRYGG 1 cut(s) 185
BstENI CCTNNNNNAGG 1 cut(s) 134
BstF5I GGATG 2 cut(s) 525, 777
BstKTI GATC 1 cut(s) 744
BstMAI GTCTC 2 cut(s) 173, 547
BstMBI GATC 1 cut(s) 741
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstNI CCWGG 1 cut(s) 192
BstSCI CCNGG 1 cut(s) 190
BstSFI CTRYAG 1 cut(s) 681
BstSLI GKGCMC 1 cut(s) 154
BstV1I GCAGC 4 cut(s) 76, 574, 700, 772
BstV2I GAAGAC 1 cut(s) 396
BsuRI GGCC 4 cut(s) 129, 152, 190, 258
BtgI CCRYGG 1 cut(s) 185
BtsCI GGATG 2 cut(s) 525, 777
Cfr13I GGNCC 5 cut(s) 139, 150, 151, 257, 490
CspCI CAANNNNNGTGG 2 cut(s) 571, 606
CviAII CATG 2 cut(s) 186, 236
DdeI CTNAG 6 cut(s) 73, 445, 494, 572, 587, 731
DpnI GATC 1 cut(s) 743
DpnII GATC 1 cut(s) 741
Ecl136II GAGCTC 1 cut(s) 720
Eco130I CCWWGG 3 cut(s) 185, 408, 530
Eco24I GRGCYC 2 cut(s) 154, 722
Eco47I GGWCC 2 cut(s) 139, 490
Eco53kI GAGCTC 1 cut(s) 720
EcoICRI GAGCTC 1 cut(s) 720
EcoNI CCTNNNNNAGG 1 cut(s) 134
EcoO109I RGGNCCY 2 cut(s) 139, 490
EcoRII CCWGG 1 cut(s) 190
EcoT14I CCWWGG 3 cut(s) 185, 408, 530
EcoT38I GRGCYC 2 cut(s) 154, 722
ErhI CCWWGG 3 cut(s) 185, 408, 530
FaeI CATG 2 cut(s) 189, 239
FaiI YATR 4 cut(s) 86, 187, 237, 716
FaqI GGGAC 1 cut(s) 120
FatI CATG 2 cut(s) 185, 235
Fnu4HI GCNGC 4 cut(s) 65, 563, 689, 761
FokI GGATG 2 cut(s) 512, 784
FriOI GRGCYC 2 cut(s) 154, 722
Fsp4HI GCNGC 4 cut(s) 65, 563, 689, 761
FspBI CTAG 4 cut(s) 419, 531, 557, 659
GluI GCNGC 4 cut(s) 65, 563, 689, 761
GsaI CCCAGC 2 cut(s) 147, 151
GsuI CTGGAG 1 cut(s) 155
HaeIII GGCC 4 cut(s) 129, 152, 190, 258
Hin1II CATG 2 cut(s) 189, 239
HindIII AAGCTT 1 cut(s) 117
HinfI GANTC 2 cut(s) 181, 247
HphI GGTGA 4 cut(s) 224, 262, 562, 605
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 4 cut(s) 134, 447, 659, 766
HpyAV CCTTC 2 cut(s) 140, 656
HpyCH4V TGCA 2 cut(s) 282, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 6 cut(s) 73, 445, 494, 572, 587, 731
Hsp92II CATG 2 cut(s) 189, 239
Kzo9I GATC 1 cut(s) 741
LmnI GCTCC 2 cut(s) 97, 725
Lsp1109I GCAGC 4 cut(s) 76, 574, 700, 772
MaeI CTAG 4 cut(s) 419, 531, 557, 659
MaeIII GTNAC 3 cut(s) 238, 370, 575
MalI GATC 1 cut(s) 743
MboI GATC 1 cut(s) 741
MboII GAAGA 1 cut(s) 396
MfeI CAATTG 1 cut(s) 349
MhlI GDGCHC 3 cut(s) 154, 162, 722
MluCI AATT 7 cut(s) 207, 317, 342, 349, 537, 609, 789
MlyI GAGTC 1 cut(s) 175
MmeI TCCRAC 2 cut(s) 251, 747
MseI TTAA 2 cut(s) 359, 485
MspA1I CMGCKG 1 cut(s) 147
MspCI CTTAAG 1 cut(s) 484
MspR9I CCNGG 1 cut(s) 192
MunI CAATTG 1 cut(s) 349
MvaI CCWGG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 166
NcoI CCATGG 1 cut(s) 185
NdeII GATC 1 cut(s) 741
NlaIII CATG 2 cut(s) 189, 239
NlaIV GGNNCC 4 cut(s) 141, 152, 491, 672
NmuCI GTSAC 2 cut(s) 238, 370
PfeI GAWTC 1 cut(s) 247
PflMI CCANNNNNTGG 1 cut(s) 191
PkrI GCNGC 4 cut(s) 66, 564, 690, 762
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PpuMI RGGWCCY 2 cut(s) 139, 490
Psp124BI GAGCTC 1 cut(s) 722
Psp5II RGGWCCY 2 cut(s) 139, 490
Psp6I CCWGG 1 cut(s) 190
PspFI CCCAGC 2 cut(s) 143, 147
PspGI CCWGG 1 cut(s) 190
PspN4I GGNNCC 4 cut(s) 141, 152, 491, 672
PspOMI GGGCCC 1 cut(s) 150
PspPI GGNCC 5 cut(s) 139, 150, 151, 257, 490
PspPPI RGGWCCY 2 cut(s) 139, 490
PvuII CAGCTG 1 cut(s) 147
SacI GAGCTC 1 cut(s) 722
SaqAI TTAA 2 cut(s) 359, 485
SatI GCNGC 4 cut(s) 65, 563, 689, 761
Sau3AI GATC 1 cut(s) 741
Sau96I GGNCC 5 cut(s) 139, 150, 151, 257, 490
SchI GAGTC 1 cut(s) 175
ScrFI CCNGG 1 cut(s) 192
SduI GDGCHC 3 cut(s) 154, 162, 722
SfcI CTRYAG 1 cut(s) 681
SinI GGWCC 2 cut(s) 139, 490
SmlI CTYRAG 2 cut(s) 484, 764
SmoI CTYRAG 2 cut(s) 484, 764
Sse9I AATT 7 cut(s) 207, 317, 342, 349, 537, 609, 789
SspMI CTAG 4 cut(s) 419, 531, 557, 659
SstI GAGCTC 1 cut(s) 722
StyD4I CCNGG 1 cut(s) 190
StyI CCWWGG 3 cut(s) 185, 408, 530
TasI AATT 7 cut(s) 207, 317, 342, 349, 537, 609, 789
TfiI GAWTC 1 cut(s) 247
Tru1I TTAA 2 cut(s) 359, 485
Tru9I TTAA 2 cut(s) 359, 485
TseFI GTSAC 2 cut(s) 238, 370
TseI GCWGC 4 cut(s) 64, 562, 688, 760
Tsp45I GTSAC 2 cut(s) 238, 370
TspDTI ATGAA 2 cut(s) 224, 231
Van91I CCANNNNNTGG 1 cut(s) 191
Vha464I CTTAAG 1 cut(s) 484
VpaK11BI GGWCC 2 cut(s) 139, 490
XagI CCTNNNNNAGG 1 cut(s) 134
XbaI TCTAGA 1 cut(s) 658
XmaJI CCTAGG 1 cut(s) 530
XspI CTAG 4 cut(s) 419, 531, 557, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.