Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0017751

Physical Location & Seq

Genomic Coordinates Reverse (-)

4346368 .. 4348059

Gene Structure 1692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G088400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1692 bp

ATGTCCATGAACAATGTGTACAAGGTCCACGCCTGGTTCATCAAAATTGGCACCCACAACCACCCTCTCTCCCTCCGACGCCTCCTTCTATGGTGCTCTGCAACACTATCCCACGAAAGCTTACCCTACGCCCGCTCTCTCTTCGCCCACTTTCCCTCTCCAGACGCCTTCGCTTACAACACCATCATCAGAGCCCACGCAACATCCCACTCCTCATGCTCCCATGCGCTCTCATTCTTCACCCAAATGCGTAGGCATGGCGTCCCCCCTGATAACTTCACCTTCCCATTTCTTCTCAAGGCCTGCGCTCGCCTCCAACTGGGTCAGGACCTGCATGCACTTATTCTCAAGCTTGGGTTTGATTCAGACATTTATGTTCAGAACGCATTGCTTAGTTTTTATGGGGGTTGTGGGTCGGTTGAGCCTGCACTGAACGTGTTCCATGAAATGCGTGAGAGAGACTTGGTTTCTTGGTCTTCCATGATTGCTTGTTTGGCCAACAATGGGTTTGCATACGAAGCTCTTGCCTTGTTTCAGCAAATGCAGCTTGCAGAGAATGTGATGCCAGATGAGGTTACTATGCTCAGTGTAATTTCCCCTGTTTCGATATTGGGGGAAATTGAATTGGGGGAGTGGGTTCATCAATTTATTCACAGAAATGGGCTAGAACTTACTGTTTCATTGGGAACTGCTTTGATCGACATGTTTTCGAGATGTGGCTCCATTGATAAATCTATCAGAGTGTTTGATGAAATGCCACTGAGGAATGTGCGCACATGGACAGCATTGATTAGTGGCCTTGCAGTGCATGGCCGCAGCAGAGAAGCTCTGAGGGTCTTTTATGAGATGAAAGAATCTGGCTTGCAGCCAGATCACATTGCTATAACTGGGGTTTTAGTGGCATGCAGTCATGGAGGCCTTGTTGATGATGGTTGGAGGGTTTTCAAAAGCATTGAAGATGAGTACGGCCTGAAGCCAACGCTTGAGCATTATGGTTGCATGGTCGACCTGCTTGGCCGGGCTGGCTTGCTTCACGAAGCTTACGAGTTCGTGGAGAAAATGCTGGTAAGGCCGAATCCAGTAGTTTGGAGGACTTTGCTTGGAGCATGTGTAAATCATAACCATCTTGCATTGGCCGAGAAAGTGAAGGAGAGGGTCCAGGAGCTAGATCCTTACCATGATGGAGATTATGTGCTTTTATCTAATGCTTATGGGGGAGCCGGGAGATGGGTTGAAAAGGAAAAGGTTAGGACTTCAATGAGGGCAAAGAGAATTAACAAGAACCCTGGATATAGTTTAATCAGTGTAGATCATGCCACTCATGAGTTTGTATCAGGGGCTAACTCTCATCCCCAATTTGAGGATATTAGAGAATTCTTGGAGAGCATAATTGAAAGTATAAGAGACACAGGTTATACTCCTCATACATCAAATGTGTTGCATGACATTGAAGAGGAGGAGAAGGAGCAATGTCTTGGTTATCATAGTGAGAAATTGGCTGTGGCTTTTGCCCTTCTGAGTGTCAAGGATAGTAGGACGATTCGGATCATGAAGAACCTCCGAATATGTCGTGATTGTCATTCGTTCATGAAGCATGTTTCAGAAAAATTCGGTAGAGAAATTATTGTTCGAGATCGAAACCGATTCCATCATTTTATCAAGGGATCATGTTCTTGTCAGGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

564

Amino Acids

63.95

Weight (kDa)

6.52

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017751)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G088400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0015391 RchiOBHm_Chr5g0015401
rosa_multiflora	Rmu_sc0001591.1_g000001 Rmu_sc0001591.1_g000002 Rmu_sc0007708.1_g000003
rosa_rugosa	Rorug05G0027100 Rorug05G0027200
rosa_samantha	Rh5BG119600 Rh5CG130200 Rh5CG130300 Rh5DG118700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	773
Acc36I	ACCTGC	2 cut(s)	339, 1017
AccB1I	GGYRCC	1 cut(s)	50
AccBSI	CCGCTC	1 cut(s)	135
AccI	GTMKAC	1 cut(s)	1005
AciI	CCGC	2 cut(s)	133, 814
AclWI	GGATC	3 cut(s)	1163, 1553, 1672
AcoI	YGGCCR	4 cut(s)	495, 811, 1015, 1134
AcsI	RAATTY	2 cut(s)	1373, 1607
AcuI	CTGAAG	1 cut(s)	992
AcyI	GRCGYC	3 cut(s)	79, 165, 261
AfaI	GTAC	2 cut(s)	20, 965
AfiI	CCNNNNNNNGG	4 cut(s)	319, 504, 1227, 1360
AflIII	ACRYGT	2 cut(s)	435, 702
AgsI	TTSAA	7 cut(s)	623, 946, 956, 1235, 1257, 1394, 1451
AjnI	CCWGG	3 cut(s)	32, 1158, 1285
AluBI	AGCT	7 cut(s)	120, 352, 521, 547, 827, 1040, 1165
AluI	AGCT	7 cut(s)	120, 352, 521, 547, 827, 1040, 1165
Alw21I	GWGCWC	1 cut(s)	98
Alw26I	GTCTC	2 cut(s)	453, 1398
AlwI	GGATC	3 cut(s)	1163, 1553, 1672
AlwNI	CAGNNNCTG	1 cut(s)	331
AoxI	GGCC	9 cut(s)	300, 495, 796, 811, 916, 967, 1015, 1070, 1134
ApeKI	GCWGC	3 cut(s)	544, 816, 865
ApoI	RAATTY	2 cut(s)	1373, 1607
Asp700I	GAANNNNTTC	1 cut(s)	437
AspLEI	GCGC	3 cut(s)	229, 308, 774
AspS9I	GGNCC	3 cut(s)	25, 328, 1156
AsuC2I	CCSGG	2 cut(s)	1019, 1222
AsuHPI	GGTGA	2 cut(s)	232, 271
AvaII	GGWCC	3 cut(s)	25, 328, 1156
BalI	TGGCCA	1 cut(s)	497
BanI	GGYRCC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	196
BbsI	GAAGAC	1 cut(s)	468
Bbv12I	GWGCWC	1 cut(s)	98
BbvI	GCAGC	3 cut(s)	556, 828, 877
BccI	CCATC	6 cut(s)	191, 923, 1131, 1175, 1221, 1656
BceAI	ACGGC	1 cut(s)	982
BcgI	CGANNNNNNTGC	2 cut(s)	506, 540
BciT130I	CCWGG	3 cut(s)	34, 1160, 1287
BcnI	CCSGG	2 cut(s)	1019, 1222
BcoDI	GTCTC	2 cut(s)	453, 1398
BfaI	CTAG	2 cut(s)	665, 1166
BfuAI	ACCTGC	2 cut(s)	339, 1017
BglI	GCCNNNNNGGC	1 cut(s)	1023
BisI	GCNGC	4 cut(s)	545, 814, 817, 866
BlsI	GCNGC	4 cut(s)	546, 815, 818, 867
Bme1390I	CCNGG	5 cut(s)	34, 1019, 1160, 1222, 1287
Bme18I	GGWCC	3 cut(s)	25, 328, 1156
BmgT120I	GGNCC	3 cut(s)	25, 328, 1156
BmiI	GGNNCC	4 cut(s)	52, 721, 1157, 1219
BmrFI	CCNGG	5 cut(s)	34, 1019, 1160, 1222, 1287
BmrI	ACTGGG	2 cut(s)	329, 897
BmsI	GCATC	1 cut(s)	552
BmuI	ACTGGG	2 cut(s)	329, 897
BpiI	GAAGAC	1 cut(s)	468
BpmI	CTGGAG	1 cut(s)	144
BpuEI	CTTGAG	3 cut(s)	281, 332, 1004
BpuMI	CCSGG	2 cut(s)	1019, 1222
BsaBI	GATNNNNATC	1 cut(s)	1544
BsaHI	GRCGYC	3 cut(s)	79, 165, 261
BsaJI	CCNNGG	1 cut(s)	1285
BsaXI	ACNNNNNCTCC	8 cut(s)	53, 83, 906, 936, 1095, 1125, 1176, 1206
Bsc4I	CCNNNNNNNGG	4 cut(s)	319, 504, 1227, 1360
Bse1I	ACTGG	3 cut(s)	324, 892, 1079
Bse3DI	GCAATG	3 cut(s)	386, 876, 1475
Bse8I	GATNNNNATC	1 cut(s)	1544
BseBI	CCWGG	3 cut(s)	34, 1160, 1287
BseDI	CCNNGG	1 cut(s)	1285
BseGI	GGATG	2 cut(s)	203, 1348
BseJI	GATNNNNATC	1 cut(s)	1544
BseLI	CCNNNNNNNGG	4 cut(s)	319, 504, 1227, 1360
BseMI	GCAATG	3 cut(s)	386, 876, 1475
BseMII	CTCAG	4 cut(s)	598, 752, 821, 1508
BseNI	ACTGG	3 cut(s)	324, 892, 1079
BseRI	GAGGAG	4 cut(s)	202, 1410, 1469, 1472
BseXI	GCAGC	3 cut(s)	556, 828, 877
BsgI	GTGCAG	1 cut(s)	411
BshFI	GGCC	9 cut(s)	302, 497, 798, 813, 918, 969, 1017, 1072, 1136
BshNI	GGYRCC	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	98
BsiSI	CCGG	2 cut(s)	1018, 1221
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	4 cut(s)	319, 504, 1227, 1360
BsmAI	GTCTC	2 cut(s)	453, 1398
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	9 cut(s)	302, 497, 798, 813, 918, 969, 1017, 1072, 1136
Bsp1286I	GDGCHC	2 cut(s)	98, 196
Bsp1407I	TGTACA	1 cut(s)	18
Bsp143I	GATC	7 cut(s)	696, 871, 1168, 1309, 1545, 1633, 1664
BspACI	CCGC	2 cut(s)	133, 814
BspANI	GGCC	9 cut(s)	302, 497, 798, 813, 918, 969, 1017, 1072, 1136
BspCNI	CTCAG	4 cut(s)	597, 753, 822, 1509
BspHI	TCATGA	3 cut(s)	1321, 1548, 1587
BspLI	GGNNCC	4 cut(s)	52, 721, 1157, 1219
BspMI	ACCTGC	2 cut(s)	339, 1017
BspPI	GGATC	3 cut(s)	1163, 1553, 1672
BspT107I	GGYRCC	1 cut(s)	50
BsrBI	CCGCTC	1 cut(s)	135
BsrDI	GCAATG	3 cut(s)	386, 876, 1475
BsrGI	TGTACA	1 cut(s)	18
BsrI	ACTGG	3 cut(s)	324, 892, 1079
BssECI	CCNNGG	1 cut(s)	1285
BssMI	GATC	7 cut(s)	696, 871, 1168, 1309, 1545, 1633, 1664
BssNI	GRCGYC	3 cut(s)	79, 165, 261
Bst2UI	CCWGG	3 cut(s)	34, 1160, 1287
Bst4CI	ACNGT	1 cut(s)	676
Bst6I	CTCTTC	2 cut(s)	146, 1446
BstACI	GRCGYC	3 cut(s)	79, 165, 261
BstAUI	TGTACA	1 cut(s)	18
BstDEI	CTNAG	5 cut(s)	392, 584, 761, 830, 1517
BstF5I	GGATG	2 cut(s)	203, 1348
BstHHI	GCGC	3 cut(s)	229, 308, 774
BstKTI	GATC	7 cut(s)	699, 874, 1171, 1312, 1548, 1636, 1667
BstMAI	GTCTC	2 cut(s)	453, 1398
BstMBI	GATC	7 cut(s)	696, 871, 1168, 1309, 1545, 1633, 1664
BstMWI	GCNNNNNNNGC	5 cut(s)	494, 518, 544, 1023, 1069
BstNI	CCWGG	3 cut(s)	34, 1160, 1287
BstNSI	RCATGY	5 cut(s)	338, 706, 906, 1110, 1598
BstSCI	CCNGG	5 cut(s)	32, 1017, 1158, 1220, 1285
BstV1I	GCAGC	3 cut(s)	556, 828, 877
BstV2I	GAAGAC	1 cut(s)	468
BstX2I	RGATCY	1 cut(s)	1168
BstXI	CCANNNNNNTGG	1 cut(s)	1086
BstYI	RGATCY	1 cut(s)	1168
BsuRI	GGCC	9 cut(s)	302, 497, 798, 813, 918, 969, 1017, 1072, 1136
BtsCI	GGATG	2 cut(s)	203, 1348
BtsI	GCAGTG	1 cut(s)	810
BtsIMutI	CAGTG	5 cut(s)	428, 592, 758, 810, 1309
BveI	ACCTGC	2 cut(s)	339, 1017
CaiI	CAGNNNCTG	1 cut(s)	331
CciI	TCATGA	3 cut(s)	1321, 1548, 1587
CfoI	GCGC	3 cut(s)	229, 308, 774
Cfr13I	GGNCC	3 cut(s)	25, 328, 1156
CseI	GACGC	3 cut(s)	87, 173, 250
Csp6I	GTAC	2 cut(s)	19, 964
CviQI	GTAC	2 cut(s)	19, 964
DdeI	CTNAG	5 cut(s)	392, 584, 761, 830, 1517
DpnI	GATC	7 cut(s)	698, 873, 1170, 1311, 1547, 1635, 1666
DpnII	GATC	7 cut(s)	696, 871, 1168, 1309, 1545, 1633, 1664
EaeI	YGGCCR	4 cut(s)	495, 811, 1015, 1134
Eam1104I	CTCTTC	2 cut(s)	146, 1446
EarI	CTCTTC	2 cut(s)	146, 1446
Eco147I	AGGCCT	2 cut(s)	302, 918
Eco24I	GRGCYC	1 cut(s)	196
Eco47I	GGWCC	3 cut(s)	25, 328, 1156
Eco57I	CTGAAG	1 cut(s)	992
EcoO109I	RGGNCCY	1 cut(s)	328
EcoRI	GAATTC	1 cut(s)	1373
EcoRII	CCWGG	3 cut(s)	32, 1158, 1285
EcoT38I	GRGCYC	1 cut(s)	196
FaqI	GGGAC	1 cut(s)	248
FauI	CCCGC	1 cut(s)	140
FblI	GTMKAC	1 cut(s)	1005
Fnu4HI	GCNGC	4 cut(s)	545, 814, 817, 866
FokI	GGATG	2 cut(s)	190, 1335
FriOI	GRGCYC	1 cut(s)	196
Fsp4HI	GCNGC	4 cut(s)	545, 814, 817, 866
FspAI	RTGCGCAY	1 cut(s)	773
FspBI	CTAG	2 cut(s)	665, 1166
FspI	TGCGCA	1 cut(s)	773
GlaI	GCGC	3 cut(s)	228, 307, 773
GluI	GCNGC	4 cut(s)	545, 814, 817, 866
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	9 cut(s)	302, 497, 798, 813, 918, 969, 1017, 1072, 1136
HapII	CCGG	2 cut(s)	1018, 1221
HgaI	GACGC	3 cut(s)	87, 173, 250
HhaI	GCGC	3 cut(s)	229, 308, 774
Hin1I	GRCGYC	3 cut(s)	79, 165, 261
Hin6I	GCGC	3 cut(s)	227, 306, 772
HinP1I	GCGC	3 cut(s)	227, 306, 772
HincII	GTYRAC	1 cut(s)	1006
HindII	GTYRAC	1 cut(s)	1006
HindIII	AAGCTT	3 cut(s)	118, 350, 1038
HinfI	GANTC	5 cut(s)	362, 854, 1075, 1540, 1644
HpaII	CCGG	2 cut(s)	1018, 1221
HphI	GGTGA	2 cut(s)	232, 271
Hpy166II	GTNNAC	3 cut(s)	19, 28, 1006
Hpy8I	GTNNAC	3 cut(s)	19, 28, 1006
Hpy99I	CGWCG	1 cut(s)	81
HpyAV	CCTTC	6 cut(s)	95, 178, 292, 1141, 1456, 1523
HpyCH4III	ACNGT	1 cut(s)	676
HpyCH4IV	ACGT	1 cut(s)	435
HpyF10VI	GCNNNNNNNGC	5 cut(s)	494, 518, 544, 1023, 1069
HpyF3I	CTNAG	5 cut(s)	392, 584, 761, 830, 1517
HpySE526I	ACGT	1 cut(s)	435
Hsp92I	GRCGYC	3 cut(s)	79, 165, 261
HspAI	GCGC	3 cut(s)	227, 306, 772
Kzo9I	GATC	7 cut(s)	696, 871, 1168, 1309, 1545, 1633, 1664
LmnI	GCTCC	6 cut(s)	224, 725, 1103, 1162, 1217, 1465
Lsp1109I	GCAGC	3 cut(s)	556, 828, 877
LweI	GCATC	1 cut(s)	552
MaeI	CTAG	2 cut(s)	665, 1166
MaeII	ACGT	1 cut(s)	435
MaeIII	GTNAC	1 cut(s)	574
MalI	GATC	7 cut(s)	698, 873, 1170, 1311, 1547, 1635, 1666
MbiI	CCGCTC	1 cut(s)	135
MboI	GATC	7 cut(s)	696, 871, 1168, 1309, 1545, 1633, 1664
MboII	GAAGA	7 cut(s)	133, 229, 284, 468, 968, 1463, 1564
MflI	RGATCY	1 cut(s)	1168
MhlI	GDGCHC	2 cut(s)	98, 196
MlsI	TGGCCA	1 cut(s)	497
MluNI	TGGCCA	1 cut(s)	497
MmeI	TCCRAC	3 cut(s)	100, 340, 914
Mox20I	TGGCCA	1 cut(s)	497
MroXI	GAANNNNTTC	1 cut(s)	437
MscI	TGGCCA	1 cut(s)	497
MseI	TTAA	2 cut(s)	1275, 1298
MslI	CAYNNNNRTG	2 cut(s)	245, 657
Msp20I	TGGCCA	1 cut(s)	497
MspI	CCGG	2 cut(s)	1018, 1221
MspR9I	CCNGG	5 cut(s)	34, 1019, 1160, 1222, 1287
MvaI	CCWGG	3 cut(s)	34, 1160, 1287
MwoI	GCNNNNNNNGC	5 cut(s)	494, 518, 544, 1023, 1069
NciI	CCSGG	2 cut(s)	1019, 1222
NdeII	GATC	7 cut(s)	696, 871, 1168, 1309, 1545, 1633, 1664
NlaIV	GGNNCC	4 cut(s)	52, 721, 1157, 1219
NmeAIII	GCCGAG	1 cut(s)	1162
NsbI	TGCGCA	1 cut(s)	773
NspI	RCATGY	5 cut(s)	338, 706, 906, 1110, 1598
PaeI	GCATGC	2 cut(s)	338, 906
PagI	TCATGA	3 cut(s)	1321, 1548, 1587
PceI	AGGCCT	2 cut(s)	302, 918
PciI	ACATGT	1 cut(s)	702
PcsI	WCGNNNNNNNCGW	1 cut(s)	1041
PdmI	GAANNNNTTC	1 cut(s)	437
PfeI	GAWTC	5 cut(s)	362, 854, 1075, 1540, 1644
PfoI	TCCNGGA	1 cut(s)	1158
PkrI	GCNGC	4 cut(s)	546, 815, 818, 867
PpuMI	RGGWCCY	1 cut(s)	328
PscI	ACATGT	1 cut(s)	702
Psp5II	RGGWCCY	1 cut(s)	328
Psp6I	CCWGG	3 cut(s)	32, 1158, 1285
PspGI	CCWGG	3 cut(s)	32, 1158, 1285
PspN4I	GGNNCC	4 cut(s)	52, 721, 1157, 1219
PspPI	GGNCC	3 cut(s)	25, 328, 1156
PspPPI	RGGWCCY	1 cut(s)	328
PsrI	GAACNNNNNNTAC	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	1168
RsaI	GTAC	2 cut(s)	20, 965
RsaNI	GTAC	2 cut(s)	19, 964
RseI	CAYNNNNRTG	2 cut(s)	245, 657
SalI	GTCGAC	1 cut(s)	1004
SaqAI	TTAA	2 cut(s)	1275, 1298
SatI	GCNGC	4 cut(s)	545, 814, 817, 866
Sau3AI	GATC	7 cut(s)	696, 871, 1168, 1309, 1545, 1633, 1664
Sau96I	GGNCC	3 cut(s)	25, 328, 1156
ScrFI	CCNGG	5 cut(s)	34, 1019, 1160, 1222, 1287
SduI	GDGCHC	2 cut(s)	98, 196
SfaNI	GCATC	1 cut(s)	552
SinI	GGWCC	3 cut(s)	25, 328, 1156
SmiMI	CAYNNNNRTG	2 cut(s)	245, 657
SmlI	CTYRAG	3 cut(s)	296, 347, 983
SmoI	CTYRAG	3 cut(s)	296, 347, 983
SphI	GCATGC	2 cut(s)	338, 906
SseBI	AGGCCT	2 cut(s)	302, 918
SsiI	CCGC	2 cut(s)	133, 814
SspMI	CTAG	2 cut(s)	665, 1166
StuI	AGGCCT	2 cut(s)	302, 918
StyD4I	CCNGG	5 cut(s)	32, 1017, 1158, 1220, 1285
TaaI	ACNGT	1 cut(s)	676
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	6 cut(s)	605, 699, 710, 1005, 1630, 1636
TatI	WGTACW	1 cut(s)	18
TauI	GCSGC	1 cut(s)	816
TfiI	GAWTC	5 cut(s)	362, 854, 1075, 1540, 1644
Tru1I	TTAA	2 cut(s)	1275, 1298
Tru9I	TTAA	2 cut(s)	1275, 1298
TscAI	CASTG	5 cut(s)	435, 592, 765, 810, 1309
TseI	GCWGC	3 cut(s)	544, 816, 865
TspRI	CASTG	5 cut(s)	435, 592, 765, 810, 1309
VpaK11BI	GGWCC	3 cut(s)	25, 328, 1156
XapI	RAATTY	2 cut(s)	1373, 1607
XceI	RCATGY	5 cut(s)	338, 706, 906, 1110, 1598
XmiI	GTMKAC	1 cut(s)	1005
XmnI	GAANNNNTTC	1 cut(s)	437
XspI	CTAG	2 cut(s)	665, 1166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.