Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0017751

Physical Location & Seq

Genomic Coordinates Reverse (-)

11231482 .. 11232024

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG119600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAACCACGTGTACAAGTTCCACGCTTGGCTTATCAAAACTGGCCAACAGAATCACCCTCCCTCCCTTCGACGCATCCTACTATGGTGTGCTGCCACACCATCCCCGAAAAGCTTATCCTACTTCCGCGCTCTCTTTGCCTACATTCCCTCTCCGGACACCTTTGCTTATAACACCATCATCAGAGCTCATGTAGCAGACTCTTCTCCTTCCCATGCAGTCTCCTTCTTTACCCAATGCGTCAGCGAGGTGTTCTACCCGATAACTTCACCTTCCCATTTCTTCTCAAGGCTTGTGCTCACCTCCAACTGGGTCAAGATGTTAGATGTCCATGCTCTTATTCTTAAGCTTGGCTTCCATTCAGACATATATGTTCAGAATGCATTAGTTAGTTTTTACGGGGGTTGTGGGTCGGTTGAGCTTGCATTGAATGTGTTCCATGCAATGCATCAGAAAGACTTGGTTTCTTGGTCATCCATGACAACGGCTTTTCCAATGAGGCCCTTGCATTATTTCGGCAAATGCAGCTTGCCAAGAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

180

Amino Acids

20.46

Weight (kDa)

9.42

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017751)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G088400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0015391 RchiOBHm_Chr5g0015401
rosa_multiflora	Rmu_sc0001591.1_g000001 Rmu_sc0001591.1_g000002 Rmu_sc0007708.1_g000003
rosa_rugosa	Rorug05G0027100 Rorug05G0027200
rosa_samantha	Rh5BG119600 Rh5CG130200 Rh5CG130300 Rh5DG118700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	171
AccII	CGCG	1 cut(s)	129
AccIII	TCCGGA	1 cut(s)	154
AciI	CCGC	1 cut(s)	127
AcoI	YGGCCR	1 cut(s)	43
AcvI	CACGTG	1 cut(s)	10
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	309
AflII	CTTAAG	1 cut(s)	344
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	1 cut(s)	430
AluBI	AGCT	5 cut(s)	114, 188, 349, 421, 528
AluI	AGCT	5 cut(s)	114, 188, 349, 421, 528
Alw21I	GWGCWC	2 cut(s)	190, 300
Alw26I	GTCTC	1 cut(s)	226
Aor13HI	TCCGGA	1 cut(s)	154
AoxI	GGCC	2 cut(s)	43, 500
ApeKI	GCWGC	2 cut(s)	92, 525
Asp700I	GAANNNNTTC	1 cut(s)	434
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	501
AsuHPI	GGTGA	3 cut(s)	47, 261, 292
BalI	TGGCCA	1 cut(s)	45
BanII	GRGCYC	1 cut(s)	190
BbrPI	CACGTG	1 cut(s)	10
Bbv12I	GWGCWC	2 cut(s)	190, 300
BbvI	GCAGC	2 cut(s)	79, 537
BccI	CCATC	2 cut(s)	109, 185
BceAI	ACGGC	1 cut(s)	501
BcoDI	GTCTC	1 cut(s)	226
BfrI	CTTAAG	1 cut(s)	344
BisI	GCNGC	2 cut(s)	93, 526
BlsI	GCNGC	2 cut(s)	94, 527
BmgT120I	GGNCC	1 cut(s)	501
BmrI	ACTGGG	1 cut(s)	319
BmsI	GCATC	2 cut(s)	84, 457
BmuI	ACTGGG	1 cut(s)	319
BpuEI	CTTGAG	1 cut(s)	271
BsaAI	YACGTR	1 cut(s)	10
BsaWI	WCCGGW	1 cut(s)	154
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	1 cut(s)	309
Bse1I	ACTGG	2 cut(s)	46, 314
Bse3DI	GCAATG	1 cut(s)	450
BseAI	TCCGGA	1 cut(s)	154
BseGI	GGATG	3 cut(s)	75, 101, 473
BseLI	CCNNNNNNNGG	1 cut(s)	309
BseMI	GCAATG	1 cut(s)	450
BseNI	ACTGG	2 cut(s)	46, 314
BseXI	GCAGC	2 cut(s)	79, 537
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	2 cut(s)	45, 502
BsiHKAI	GWGCWC	2 cut(s)	190, 300
BsiSI	CCGG	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	309
BsmAI	GTCTC	1 cut(s)	226
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	2 cut(s)	45, 502
Bsp1286I	GDGCHC	2 cut(s)	190, 300
Bsp13I	TCCGGA	1 cut(s)	154
Bsp1407I	TGTACA	1 cut(s)	12
BspACI	CCGC	1 cut(s)	127
BspANI	GGCC	2 cut(s)	45, 502
BspEI	TCCGGA	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	129
BspTI	CTTAAG	1 cut(s)	344
BsrDI	GCAATG	1 cut(s)	450
BsrGI	TGTACA	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	46, 314
Bst6I	CTCTTC	1 cut(s)	208
BstAFI	CTTAAG	1 cut(s)	344
BstAUI	TGTACA	1 cut(s)	12
BstBAI	YACGTR	1 cut(s)	10
BstC8I	GCNNGC	2 cut(s)	423, 530
BstF5I	GGATG	3 cut(s)	75, 101, 473
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	131
BstMAI	GTCTC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 194, 525
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	2 cut(s)	79, 537
BsuRI	GGCC	2 cut(s)	45, 502
BtsCI	GGATG	3 cut(s)	75, 101, 473
Cac8I	GCNNGC	2 cut(s)	423, 530
CfoI	GCGC	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	501
CseI	GACGC	2 cut(s)	81, 229
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	5 cut(s)	191, 215, 332, 440, 478
CviQI	GTAC	1 cut(s)	13
EaeI	YGGCCR	1 cut(s)	43
Eam1104I	CTCTTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	208
Ecl136II	GAGCTC	1 cut(s)	188
Eco24I	GRGCYC	1 cut(s)	190
Eco53kI	GAGCTC	1 cut(s)	188
Eco72I	CACGTG	1 cut(s)	10
EcoICRI	GAGCTC	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	501
EcoT22I	ATGCAT	2 cut(s)	385, 450
EcoT38I	GRGCYC	1 cut(s)	190
FaeI	CATG	5 cut(s)	194, 218, 335, 443, 481
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FatI	CATG	5 cut(s)	190, 214, 331, 439, 477
Fnu4HI	GCNGC	2 cut(s)	93, 526
FokI	GGATG	3 cut(s)	62, 88, 460
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	2 cut(s)	93, 526
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	2 cut(s)	93, 526
HaeIII	GGCC	2 cut(s)	45, 502
HapII	CCGG	1 cut(s)	155
HgaI	GACGC	2 cut(s)	81, 229
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	5 cut(s)	194, 218, 335, 443, 481
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HindIII	AAGCTT	2 cut(s)	112, 347
HinfI	GANTC	2 cut(s)	52, 200
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	3 cut(s)	47, 261, 292
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	4 cut(s)	185, 364, 378, 453
Hpy188III	TCNNGA	2 cut(s)	155, 316
Hpy8I	GTNNAC	1 cut(s)	13
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	4 cut(s)	77, 219, 235, 282
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	7 cut(s)	218, 383, 425, 443, 448, 508, 525
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 194, 525
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	5 cut(s)	194, 218, 335, 443, 481
HspAI	GCGC	1 cut(s)	129
Kpn2I	TCCGGA	1 cut(s)	154
LpnPI	CCDG	3 cut(s)	27, 168, 295
Lsp1109I	GCAGC	2 cut(s)	79, 537
LweI	GCATC	2 cut(s)	84, 457
MaeII	ACGT	1 cut(s)	9
MboII	GAAGA	2 cut(s)	195, 274
MhlI	GDGCHC	2 cut(s)	190, 300
MlsI	TGGCCA	1 cut(s)	45
MluNI	TGGCCA	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	6 cut(s)	69, 73, 160, 241, 313, 492
Mox20I	TGGCCA	1 cut(s)	45
Mph1103I	ATGCAT	2 cut(s)	385, 450
MroI	TCCGGA	1 cut(s)	154
MroXI	GAANNNNTTC	1 cut(s)	434
MscI	TGGCCA	1 cut(s)	45
MseI	TTAA	1 cut(s)	345
Msp20I	TGGCCA	1 cut(s)	45
MspCI	CTTAAG	1 cut(s)	344
MspI	CCGG	1 cut(s)	155
Mva1269I	GAATGC	1 cut(s)	385
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	3 cut(s)	137, 194, 525
NlaIII	CATG	5 cut(s)	194, 218, 335, 443, 481
NsiI	ATGCAT	2 cut(s)	385, 450
PctI	GAATGC	1 cut(s)	385
PdmI	GAANNNNTTC	1 cut(s)	434
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	94, 527
PleI	GAGTC	1 cut(s)	194
PmaCI	CACGTG	1 cut(s)	10
PmlI	CACGTG	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	194
Ppu21I	YACGTR	1 cut(s)	10
PsiI	TTATAA	1 cut(s)	171
Psp124BI	GAGCTC	1 cut(s)	190
PspCI	CACGTG	1 cut(s)	10
PspPI	GGNCC	1 cut(s)	501
PsrI	GAACNNNNNNTAC	1 cut(s)	28
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SacI	GAGCTC	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	2 cut(s)	93, 526
Sau96I	GGNCC	1 cut(s)	501
SchI	GAGTC	1 cut(s)	194
SduI	GDGCHC	2 cut(s)	190, 300
SfaNI	GCATC	2 cut(s)	84, 457
SmlI	CTYRAG	2 cut(s)	286, 344
SmoI	CTYRAG	2 cut(s)	286, 344
SsiI	CCGC	1 cut(s)	127
SstI	GAGCTC	1 cut(s)	190
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	1 cut(s)	70
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TseI	GCWGC	2 cut(s)	92, 525
TspDTI	ATGAA	1 cut(s)	17
Vha464I	CTTAAG	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	434
Zsp2I	ATGCAT	2 cut(s)	385, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.