Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007708.1

Orthogroup ID

OG0017751

Physical Location & Seq

Genomic Coordinates Reverse (-)

3889 .. 5001

Gene Structure 1113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007708.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

atgcagcttgccaagaatgtaatgctagatgaggtcagtatgcttagtgtgatatccgctgtttcgagcttaggggcactggaattgggtcagtgggttcatgactttataaacaaaagtcaactaaaacttaccgtatcattgggtactgcattgatcgacatgtattcgcgttgtggatctgtcgataaatctattgaaattcttgatgaaatgtcattgaagaatgtacagacatggacaacattgagtactggccttgctgtgcatggctgcagtagagaagcactaagggtcttttatgagatgaaaaaagctggcttgcagccagatcatatgtctataactgggattttaatggcatgtagtcatggtggacttgtggaagatgattggagagttttcaaaagcatgaagaatgagtatggcctggagccaaggcttgagcattatggttgtatggttgacctccttggccgggccggtttgctttccgaagcctatgaatttgtagagaaaatgccaataaggccaaattctgtgatttggaggacccttcttggagcatgtgtaaatcataacaatcttgtgttggctaagaaagtgaagaagaggttgaacaagctagatcgttatcatgatggtgattatgtgcttttatctgatgttaggaattcaatgagggcaaggagagttaacaagaaagctggttctagttcaattagtgtagaccaaatcattcatgagttcatttcaggggagaactctcatccccaatcactggatattagagatttcttagacagaatatttgaaagtataaaagacacgggatatactccccttacatcgaatgtattgcatgacattgaagaggaggagaaggagcatactcttcgttatcatagtgagaaattggctgtggcttttgcacttctgagtgtcaaggatactaggaccattagggtcatgcagaatattcgaatctgttgtgactgccattctttcatgaagcatgtttcagccaaatttggtagagaaattattgttcgccatcgaaatcggttctatcattttatcaatggatcatgttcttgtcaagattattggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

370

Amino Acids

42.18

Weight (kDa)

8.0

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017751)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G088400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0015391 RchiOBHm_Chr5g0015401
rosa_multiflora	Rmu_sc0001591.1_g000001 Rmu_sc0001591.1_g000002 Rmu_sc0007708.1_g000003
rosa_rugosa	Rorug05G0027100 Rorug05G0027200
rosa_samantha	Rh5BG119600 Rh5CG130200 Rh5CG130300 Rh5DG118700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	110
AccB7I	CCANNNNNTGG	1 cut(s)	781
AccI	GTMKAC	1 cut(s)	729
AccII	CGCG	1 cut(s)	172
AciI	CCGC	1 cut(s)	57
AclWI	GGATC	2 cut(s)	187, 1093
AcoI	YGGCCR	1 cut(s)	475
AcsI	RAATTY	5 cut(s)	201, 506, 535, 673, 1028
AfaI	GTAC	3 cut(s)	148, 231, 253
AfiI	CCNNNNNNNGG	2 cut(s)	478, 781
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	8 cut(s)	200, 223, 406, 619, 678, 720, 815, 872
AjnI	CCWGG	1 cut(s)	429
AluBI	AGCT	5 cut(s)	7, 69, 317, 625, 707
AluI	AGCT	5 cut(s)	7, 69, 317, 625, 707
AlwI	GGATC	2 cut(s)	187, 1093
AoxI	GGCC	5 cut(s)	256, 427, 475, 480, 530
ApeKI	GCWGC	3 cut(s)	4, 273, 325
ApoI	RAATTY	5 cut(s)	201, 506, 535, 673, 1028
ArsI	GACNNNNNNTTYG	2 cut(s)	794, 826
AspS9I	GGNCC	3 cut(s)	480, 552, 957
AsuC2I	CCSGG	1 cut(s)	479
AsuHPI	GGTGA	1 cut(s)	656
AsuII	TTCGAA	1 cut(s)	982
AvaII	GGWCC	2 cut(s)	552, 957
BaeGI	GKGCMC	1 cut(s)	79
BbvI	GCAGC	3 cut(s)	16, 260, 337
BccI	CCATC	2 cut(s)	635, 1062
BcgI	CGANNNNNNTGC	6 cut(s)	841, 875, 878, 912, 962, 996
BciT130I	CCWGG	1 cut(s)	431
BciVI	GTATCC	1 cut(s)	943
BcnI	CCSGG	1 cut(s)	479
BfaI	CTAG	4 cut(s)	26, 626, 714, 954
BfmI	CTRYAG	1 cut(s)	274
BfuI	GTATCC	1 cut(s)	943
BglI	GCCNNNNNGGC	1 cut(s)	529
BisI	GCNGC	3 cut(s)	5, 274, 326
BlsI	GCNGC	3 cut(s)	6, 275, 327
BmcAI	AGTACT	1 cut(s)	253
Bme1390I	CCNGG	2 cut(s)	431, 479
Bme18I	GGWCC	2 cut(s)	552, 957
BmgT120I	GGNCC	3 cut(s)	480, 552, 957
BmiI	GGNNCC	2 cut(s)	435, 554
BmrFI	CCNGG	2 cut(s)	431, 479
BmrI	ACTGGG	1 cut(s)	357
BmuI	ACTGGG	1 cut(s)	357
BpmI	CTGGAG	1 cut(s)	452
Bpu10I	CCTNAGC	1 cut(s)	70
Bpu14I	TTCGAA	1 cut(s)	982
BpuEI	CTTGAG	1 cut(s)	464
BpuMI	CCSGG	1 cut(s)	479
BsaBI	GATNNNNATC	1 cut(s)	633
BsaJI	CCNNGG	2 cut(s)	437, 472
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
Bsc4I	CCNNNNNNNGG	2 cut(s)	478, 781
Bse118I	RCCGGY	1 cut(s)	482
Bse1I	ACTGG	4 cut(s)	84, 259, 352, 786
Bse8I	GATNNNNATC	1 cut(s)	633
BseBI	CCWGG	1 cut(s)	431
BseDI	CCNNGG	2 cut(s)	437, 472
BseGI	GGATG	1 cut(s)	769
BseJI	GATNNNNATC	1 cut(s)	633
BseLI	CCNNNNNNNGG	2 cut(s)	478, 781
BseMII	CTCAG	1 cut(s)	929
BseNI	ACTGG	4 cut(s)	84, 259, 352, 786
BseRI	GAGGAG	2 cut(s)	890, 893
BseSI	GKGCMC	1 cut(s)	79
BseXI	GCAGC	3 cut(s)	16, 260, 337
Bsh1236I	CGCG	1 cut(s)	172
BshFI	GGCC	5 cut(s)	258, 429, 477, 482, 532
BsiSI	CCGG	2 cut(s)	478, 483
BslI	CCNNNNNNNGG	2 cut(s)	478, 781
BsnI	GGCC	5 cut(s)	258, 429, 477, 482, 532
Bsp119I	TTCGAA	1 cut(s)	982
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp1407I	TGTACA	1 cut(s)	229
Bsp143I	GATC	5 cut(s)	156, 179, 331, 628, 1085
BspACI	CCGC	1 cut(s)	57
BspANI	GGCC	5 cut(s)	258, 429, 477, 482, 532
BspCNI	CTCAG	1 cut(s)	930
BspFNI	CGCG	1 cut(s)	172
BspHI	TCATGA	4 cut(s)	100, 637, 742, 1008
BspLI	GGNNCC	2 cut(s)	435, 554
BspMAI	CTGCAG	1 cut(s)	278
BspPI	GGATC	2 cut(s)	187, 1093
BspT104I	TTCGAA	1 cut(s)	982
BsrFI	RCCGGY	1 cut(s)	482
BsrGI	TGTACA	1 cut(s)	229
BsrI	ACTGG	4 cut(s)	84, 259, 352, 786
BssAI	RCCGGY	1 cut(s)	482
BssECI	CCNNGG	2 cut(s)	437, 472
BssMI	GATC	5 cut(s)	156, 179, 331, 628, 1085
BssT1I	CCWWGG	2 cut(s)	437, 472
Bst2UI	CCWGG	1 cut(s)	431
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	3 cut(s)	605, 867, 900
BstAUI	TGTACA	1 cut(s)	229
BstBI	TTCGAA	1 cut(s)	982
BstC8I	GCNNGC	3 cut(s)	9, 319, 323
BstDEI	CTNAG	6 cut(s)	44, 70, 290, 597, 799, 938
BstF5I	GGATG	1 cut(s)	769
BstFNI	CGCG	1 cut(s)	172
BstKTI	GATC	5 cut(s)	159, 182, 334, 631, 1088
BstMBI	GATC	5 cut(s)	156, 179, 331, 628, 1085
BstMWI	GCNNNNNNNGC	1 cut(s)	529
BstNI	CCWGG	1 cut(s)	431
BstNSI	RCATGY	4 cut(s)	166, 366, 570, 1019
BstSCI	CCNGG	2 cut(s)	429, 477
BstSFI	CTRYAG	1 cut(s)	274
BstSLI	GKGCMC	1 cut(s)	79
BstUI	CGCG	1 cut(s)	172
BstV1I	GCAGC	3 cut(s)	16, 260, 337
BstX2I	RGATCY	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	179
BsuI	GTATCC	1 cut(s)	943
BsuRI	GGCC	5 cut(s)	258, 429, 477, 482, 532
BtsCI	GGATG	1 cut(s)	769
BtsIMutI	CAGTG	3 cut(s)	77, 98, 779
Cac8I	GCNNGC	3 cut(s)	9, 319, 323
CciI	TCATGA	4 cut(s)	100, 637, 742, 1008
Cfr10I	RCCGGY	1 cut(s)	482
Cfr13I	GGNCC	3 cut(s)	480, 552, 957
Csp6I	GTAC	3 cut(s)	147, 230, 252
CviQI	GTAC	3 cut(s)	147, 230, 252
DdeI	CTNAG	6 cut(s)	44, 70, 290, 597, 799, 938
DpnI	GATC	5 cut(s)	158, 181, 333, 630, 1087
DpnII	GATC	5 cut(s)	156, 179, 331, 628, 1085
EaeI	YGGCCR	1 cut(s)	475
Eam1104I	CTCTTC	3 cut(s)	605, 867, 900
EarI	CTCTTC	3 cut(s)	605, 867, 900
Eco130I	CCWWGG	2 cut(s)	437, 472
Eco32I	GATATC	1 cut(s)	54
Eco47I	GGWCC	2 cut(s)	552, 957
EcoO109I	RGGNCCY	1 cut(s)	552
EcoRI	GAATTC	1 cut(s)	673
EcoRII	CCWGG	1 cut(s)	429
EcoRV	GATATC	1 cut(s)	54
EcoT14I	CCWWGG	2 cut(s)	437, 472
ErhI	CCWWGG	2 cut(s)	437, 472
FauNDI	CATATG	1 cut(s)	336
FblI	GTMKAC	1 cut(s)	729
Fnu4HI	GCNGC	3 cut(s)	5, 274, 326
FokI	GGATG	1 cut(s)	756
Fsp4HI	GCNGC	3 cut(s)	5, 274, 326
FspBI	CTAG	4 cut(s)	26, 626, 714, 954
GluI	GCNGC	3 cut(s)	5, 274, 326
GsuI	CTGGAG	1 cut(s)	452
HaeIII	GGCC	5 cut(s)	258, 429, 477, 482, 532
HapII	CCGG	2 cut(s)	478, 483
HincII	GTYRAC	3 cut(s)	122, 466, 697
HindII	GTYRAC	3 cut(s)	122, 466, 697
HinfI	GANTC	1 cut(s)	984
HpaI	GTTAAC	1 cut(s)	697
HpaII	CCGG	2 cut(s)	478, 483
HphI	GGTGA	1 cut(s)	656
Hpy166II	GTNNAC	5 cut(s)	122, 377, 466, 697, 730
Hpy188I	TCNGA	3 cut(s)	496, 664, 939
Hpy188III	TCNNGA	6 cut(s)	101, 206, 638, 743, 1009, 1100
Hpy8I	GTNNAC	5 cut(s)	122, 377, 466, 697, 730
HpyAV	CCTTC	2 cut(s)	566, 877
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4V	TGCA	8 cut(s)	4, 152, 268, 276, 325, 862, 932, 973
HpyF10VI	GCNNNNNNNGC	1 cut(s)	529
HpyF3I	CTNAG	6 cut(s)	44, 70, 290, 597, 799, 938
KspAI	GTTAAC	1 cut(s)	697
Kzo9I	GATC	5 cut(s)	156, 179, 331, 628, 1085
LmnI	GCTCC	3 cut(s)	433, 563, 886
Lsp1109I	GCAGC	3 cut(s)	16, 260, 337
MaeI	CTAG	4 cut(s)	26, 626, 714, 954
MaeIII	GTNAC	1 cut(s)	992
MalI	GATC	5 cut(s)	158, 181, 333, 630, 1087
MboI	GATC	5 cut(s)	156, 179, 331, 628, 1085
MboII	GAAGA	7 cut(s)	235, 398, 427, 619, 622, 884, 887
MflI	RGATCY	1 cut(s)	179
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	9 cut(s)	83, 201, 506, 535, 673, 720, 914, 1028, 1041
MnlI	CCTC	7 cut(s)	25, 479, 543, 606, 675, 868, 871
MseI	TTAA	2 cut(s)	356, 696
MslI	CAYNNNNRTG	1 cut(s)	642
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	2 cut(s)	478, 483
MspR9I	CCNGG	2 cut(s)	431, 479
MvaI	CCWGG	1 cut(s)	431
MvnI	CGCG	1 cut(s)	172
MwoI	GCNNNNNNNGC	1 cut(s)	529
NciI	CCSGG	1 cut(s)	479
NdeI	CATATG	1 cut(s)	336
NdeII	GATC	5 cut(s)	156, 179, 331, 628, 1085
NlaIV	GGNNCC	2 cut(s)	435, 554
NmuCI	GTSAC	1 cut(s)	992
NspI	RCATGY	4 cut(s)	166, 366, 570, 1019
NspV	TTCGAA	1 cut(s)	982
PagI	TCATGA	4 cut(s)	100, 637, 742, 1008
PciI	ACATGT	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	984
PflMI	CCANNNNNTGG	1 cut(s)	781
PkrI	GCNGC	3 cut(s)	6, 275, 327
PpuMI	RGGWCCY	1 cut(s)	552
PscI	ACATGT	1 cut(s)	162
PsiI	TTATAA	1 cut(s)	110
Psp5II	RGGWCCY	1 cut(s)	552
Psp6I	CCWGG	1 cut(s)	429
PspGI	CCWGG	1 cut(s)	429
PspN4I	GGNNCC	2 cut(s)	435, 554
PspPI	GGNCC	3 cut(s)	480, 552, 957
PspPPI	RGGWCCY	1 cut(s)	552
PstI	CTGCAG	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	179
RsaI	GTAC	3 cut(s)	148, 231, 253
RsaNI	GTAC	3 cut(s)	147, 230, 252
RseI	CAYNNNNRTG	1 cut(s)	642
SaqAI	TTAA	2 cut(s)	356, 696
SatI	GCNGC	3 cut(s)	5, 274, 326
Sau3AI	GATC	5 cut(s)	156, 179, 331, 628, 1085
Sau96I	GGNCC	3 cut(s)	480, 552, 957
ScaI	AGTACT	1 cut(s)	253
ScrFI	CCNGG	2 cut(s)	431, 479
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	8 cut(s)	9, 36, 71, 319, 471, 617, 627, 709
SfcI	CTRYAG	1 cut(s)	274
SfuI	TTCGAA	1 cut(s)	982
SinI	GGWCC	2 cut(s)	552, 957
SmiMI	CAYNNNNRTG	1 cut(s)	642
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	9 cut(s)	83, 201, 506, 535, 673, 720, 914, 1028, 1041
SsiI	CCGC	1 cut(s)	57
SspI	AATATT	2 cut(s)	810, 979
SspMI	CTAG	4 cut(s)	26, 626, 714, 954
StyD4I	CCNGG	2 cut(s)	429, 477
StyI	CCWWGG	2 cut(s)	437, 472
TaaI	ACNGT	1 cut(s)	136
TaqI	TCGA	6 cut(s)	65, 159, 186, 851, 982, 1057
TasI	AATT	9 cut(s)	83, 201, 506, 535, 673, 720, 914, 1028, 1041
TatI	WGTACW	2 cut(s)	229, 251
TfiI	GAWTC	1 cut(s)	984
Tru1I	TTAA	2 cut(s)	356, 696
Tru9I	TTAA	2 cut(s)	356, 696
TscAI	CASTG	3 cut(s)	84, 98, 786
TseFI	GTSAC	1 cut(s)	992
TseI	GCWGC	3 cut(s)	4, 273, 325
Tsp45I	GTSAC	1 cut(s)	992
TspDTI	ATGAA	9 cut(s)	89, 225, 323, 428, 519, 731, 739, 997, 1025
TspRI	CASTG	3 cut(s)	84, 98, 786
Van91I	CCANNNNNTGG	1 cut(s)	781
VpaK11BI	GGWCC	2 cut(s)	552, 957
XapI	RAATTY	5 cut(s)	201, 506, 535, 673, 1028
XceI	RCATGY	4 cut(s)	166, 366, 570, 1019
XmiI	GTMKAC	1 cut(s)	729
XspI	CTAG	4 cut(s)	26, 626, 714, 954
ZrmI	AGTACT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.