Rh5DG118700

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0017751
Physical Location & Seq
Reverse (-)
10717708 .. 10718130
423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG118700.1

Sequence Viewer

Length: 423 bp
ATGAACCACGTGTACAAGTTCCATGCTTGGCTTATCAAAACTGGCCAACAGAATCACCCTCCCTCCCTACGCATCCTACTATGGTGTGCTGCCACACCATCCCCGAAAAGCTTATCCTACTTCCGCGCTCTCATTGCCTACATTCCCTCTCCGGACACCTTTGCTTATAACACCATCATCAGAGCTCATGTAGCAGCCCACTCTTCTCCTTCCCATGCAGTCTCCTTCTTTACCCAAATGCGTCAGCGAGGTGTTCTACCCAATAACTTCACCTTCCCATTTCTTCTCAAGGCTTGTGCTCACATCCAACTGGGTCAAGATGTCCATGCACTTATTCTTAAGCTTGGCTTCCATTCAGACTTATATGTTCAGAATGCATTAGTTAGTTTTTACGGGGTTGTGGGTCGGTTGAGCTTGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

140

Amino Acids

15.77

Weight (kDa)

9.95

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 51 - 101 9.1e-12 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 168
AccII CGCG 1 cut(s) 126
AccIII TCCGGA 1 cut(s) 151
AciI CCGC 1 cut(s) 124
AcoI YGGCCR 1 cut(s) 43
AcvI CACGTG 1 cut(s) 10
AfaI GTAC 1 cut(s) 14
AflII CTTAAG 1 cut(s) 338
AflIII ACRYGT 1 cut(s) 9
AluBI AGCT 4 cut(s) 111, 185, 343, 414
AluI AGCT 4 cut(s) 111, 185, 343, 414
Alw21I GWGCWC 2 cut(s) 187, 301
Alw26I GTCTC 1 cut(s) 226
Aor13HI TCCGGA 1 cut(s) 151
AoxI GGCC 1 cut(s) 43
ApeKI GCWGC 2 cut(s) 89, 194
AspLEI GCGC 1 cut(s) 128
AsuHPI GGTGA 2 cut(s) 47, 262
BalI TGGCCA 1 cut(s) 45
BanII GRGCYC 1 cut(s) 187
BbrPI CACGTG 1 cut(s) 10
Bbv12I GWGCWC 2 cut(s) 187, 301
BbvI GCAGC 2 cut(s) 76, 206
BccI CCATC 2 cut(s) 106, 182
BcoDI GTCTC 1 cut(s) 226
BfrI CTTAAG 1 cut(s) 338
BisI GCNGC 2 cut(s) 90, 195
BlsI GCNGC 2 cut(s) 91, 196
BmrI ACTGGG 1 cut(s) 320
BmsI GCATC 1 cut(s) 81
BmuI ACTGGG 1 cut(s) 320
BpuEI CTTGAG 1 cut(s) 272
BsaAI YACGTR 1 cut(s) 10
BsaWI WCCGGW 1 cut(s) 151
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bse1I ACTGG 2 cut(s) 46, 315
Bse3DI GCAATG 1 cut(s) 132
BseAI TCCGGA 1 cut(s) 151
BseGI GGATG 3 cut(s) 72, 98, 303
BseMI GCAATG 1 cut(s) 132
BseNI ACTGG 2 cut(s) 46, 315
BseXI GCAGC 2 cut(s) 76, 206
Bsh1236I CGCG 1 cut(s) 126
BshFI GGCC 1 cut(s) 45
BsiHKAI GWGCWC 2 cut(s) 187, 301
BsiSI CCGG 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 226
BsmI GAATGC 1 cut(s) 379
BsnI GGCC 1 cut(s) 45
Bsp1286I GDGCHC 2 cut(s) 187, 301
Bsp13I TCCGGA 1 cut(s) 151
Bsp1407I TGTACA 1 cut(s) 12
BspACI CCGC 1 cut(s) 124
BspANI GGCC 1 cut(s) 45
BspEI TCCGGA 1 cut(s) 151
BspFNI CGCG 1 cut(s) 126
BspTI CTTAAG 1 cut(s) 338
BsrDI GCAATG 1 cut(s) 132
BsrGI TGTACA 1 cut(s) 12
BsrI ACTGG 2 cut(s) 46, 315
Bst6I CTCTTC 1 cut(s) 208
BstAFI CTTAAG 1 cut(s) 338
BstAUI TGTACA 1 cut(s) 12
BstBAI YACGTR 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 416
BstF5I GGATG 3 cut(s) 72, 98, 303
BstFNI CGCG 1 cut(s) 126
BstHHI GCGC 1 cut(s) 128
BstMAI GTCTC 1 cut(s) 226
BstMWI GCNNNNNNNGC 2 cut(s) 134, 191
BstUI CGCG 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 76, 206
BsuRI GGCC 1 cut(s) 45
BtsCI GGATG 3 cut(s) 72, 98, 303
Cac8I GCNNGC 1 cut(s) 416
CfoI GCGC 1 cut(s) 128
CseI GACGC 1 cut(s) 230
Csp6I GTAC 1 cut(s) 13
CviAII CATG 4 cut(s) 23, 188, 215, 326
CviJI RGCY 9 cut(s) 31, 45, 111, 185, 197, 293, 343, 348, 414
CviKI_1 RGCY 9 cut(s) 31, 45, 111, 185, 197, 293, 343, 348, 414
CviQI GTAC 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 208
EarI CTCTTC 1 cut(s) 208
Ecl136II GAGCTC 1 cut(s) 185
Eco24I GRGCYC 1 cut(s) 187
Eco53kI GAGCTC 1 cut(s) 185
Eco72I CACGTG 1 cut(s) 10
EcoICRI GAGCTC 1 cut(s) 185
EcoT22I ATGCAT 1 cut(s) 379
EcoT38I GRGCYC 1 cut(s) 187
FaeI CATG 4 cut(s) 26, 191, 218, 329
FaiI YATR 8 cut(s) 24, 82, 168, 189, 216, 327, 364, 366
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FatI CATG 4 cut(s) 22, 187, 214, 325
Fnu4HI GCNGC 2 cut(s) 90, 195
FokI GGATG 3 cut(s) 59, 85, 290
FriOI GRGCYC 1 cut(s) 187
Fsp4HI GCNGC 2 cut(s) 90, 195
GlaI GCGC 1 cut(s) 127
GluI GCNGC 2 cut(s) 90, 195
HaeIII GGCC 1 cut(s) 45
HapII CCGG 1 cut(s) 152
HgaI GACGC 1 cut(s) 230
HhaI GCGC 1 cut(s) 128
Hin1II CATG 4 cut(s) 26, 191, 218, 329
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HindIII AAGCTT 2 cut(s) 109, 341
HinfI GANTC 1 cut(s) 52
HpaII CCGG 1 cut(s) 152
HphI GGTGA 2 cut(s) 47, 262
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 3 cut(s) 182, 358, 372
Hpy188III TCNNGA 2 cut(s) 152, 317
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 3 cut(s) 219, 235, 283
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 4 cut(s) 218, 329, 377, 418
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 191
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 4 cut(s) 26, 191, 218, 329
HspAI GCGC 1 cut(s) 126
Kpn2I TCCGGA 1 cut(s) 151
LpnPI CCDG 3 cut(s) 27, 165, 296
Lsp1109I GCAGC 2 cut(s) 76, 206
LweI GCATC 1 cut(s) 81
MaeII ACGT 1 cut(s) 9
MboII GAAGA 2 cut(s) 195, 275
MhlI GDGCHC 2 cut(s) 187, 301
MlsI TGGCCA 1 cut(s) 45
MluNI TGGCCA 1 cut(s) 45
MmeI TCCRAC 1 cut(s) 331
MnlI CCTC 4 cut(s) 69, 73, 157, 242
Mox20I TGGCCA 1 cut(s) 45
Mph1103I ATGCAT 1 cut(s) 379
MroI TCCGGA 1 cut(s) 151
MscI TGGCCA 1 cut(s) 45
MseI TTAA 1 cut(s) 339
Msp20I TGGCCA 1 cut(s) 45
MspCI CTTAAG 1 cut(s) 338
MspI CCGG 1 cut(s) 152
Mva1269I GAATGC 1 cut(s) 379
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 134, 191
NlaIII CATG 4 cut(s) 26, 191, 218, 329
NsiI ATGCAT 1 cut(s) 379
PctI GAATGC 1 cut(s) 379
PfeI GAWTC 1 cut(s) 52
PkrI GCNGC 2 cut(s) 91, 196
PmaCI CACGTG 1 cut(s) 10
PmlI CACGTG 1 cut(s) 10
Ppu21I YACGTR 1 cut(s) 10
PsiI TTATAA 1 cut(s) 168
Psp124BI GAGCTC 1 cut(s) 187
PspCI CACGTG 1 cut(s) 10
PsrI GAACNNNNNNTAC 1 cut(s) 28
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SacI GAGCTC 1 cut(s) 187
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 2 cut(s) 90, 195
SduI GDGCHC 2 cut(s) 187, 301
SetI ASST 8 cut(s) 12, 113, 161, 187, 253, 275, 345, 416
SfaNI GCATC 1 cut(s) 81
SmlI CTYRAG 2 cut(s) 287, 338
SmoI CTYRAG 2 cut(s) 287, 338
SsiI CCGC 1 cut(s) 124
SstI GAGCTC 1 cut(s) 187
TaiI ACGT 1 cut(s) 12
TatI WGTACW 1 cut(s) 12
TfiI GAWTC 1 cut(s) 52
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TseI GCWGC 2 cut(s) 89, 194
TspDTI ATGAA 1 cut(s) 17
Vha464I CTTAAG 1 cut(s) 338
Zsp2I ATGCAT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.