Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001591.1

Orthogroup ID

OG0017751

Physical Location & Seq

Genomic Coordinates Reverse (-)

728 .. 1664

Gene Structure 937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001591.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

atgaaccacgtgtacaagttccatgcttggcttatcaaaactggccaacagaatcaccctccctccctacgcatcctactatggtgtgctgccacaccatccccgaaaagcttatcctacttccgcgctctcattgcctacattccctctccggacacctttgcttataacaccatcatcagagctcatgtagcagcccactcttctccttcccatgcagtctccttctttacccaaatgcgtcagcgaggtgttctacccaataacttcaccttcccatttcttctcaaggcttgtgctcacatccaactgggtcaagatgtccatgcacttattcttaagcttggcttccattcagacttatatgttcagaatgcattagttagtttttacgggcttgccaagaatgtaatgccagatgaggtcactatgcttagtgtgatatccgctgtttcgagcttaggggcactggaattgggtcagtgggttcatgactttataaacaaaagtcaactaaaacttaccgtatcattgggtactgcattgatcgacatgtattcgcgttgtggatctgttgataaatctattgaaattcttgatgaaatgtcatcaaagaatgtacagacatggacaacattgagtactggccttgctgtgcatggctgcagtagagaagcactaagggtcttttatgagatgaaaaaagctggcttgcagccagatcatatgtctataactgggattttaatggcatttagtcatggtggacttgtggaagatgattggagagttttcaaaagcatgaagaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

270

Amino Acids

30.09

Weight (kDa)

9.0

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017751)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G088400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0015391 RchiOBHm_Chr5g0015401
rosa_multiflora	Rmu_sc0001591.1_g000001 Rmu_sc0001591.1_g000002 Rmu_sc0007708.1_g000003
rosa_rugosa	Rorug05G0027100 Rorug05G0027200
rosa_samantha	Rh5BG119600 Rh5CG130200 Rh5CG130300 Rh5DG118700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	168, 500
AccII	CGCG	2 cut(s)	126, 562
AccIII	TCCGGA	1 cut(s)	151
AciI	CCGC	2 cut(s)	124, 447
AclWI	GGATC	1 cut(s)	577
AcoI	YGGCCR	1 cut(s)	43
AcsI	RAATTY	1 cut(s)	591
AcvI	CACGTG	1 cut(s)	10
AfaI	GTAC	4 cut(s)	14, 538, 621, 643
AflII	CTTAAG	1 cut(s)	338
AflIII	ACRYGT	2 cut(s)	9, 552
AgsI	TTSAA	2 cut(s)	590, 796
AluBI	AGCT	5 cut(s)	111, 185, 343, 459, 707
AluI	AGCT	5 cut(s)	111, 185, 343, 459, 707
Alw21I	GWGCWC	2 cut(s)	187, 301
Alw26I	GTCTC	1 cut(s)	226
AlwI	GGATC	1 cut(s)	577
Aor13HI	TCCGGA	1 cut(s)	151
AoxI	GGCC	2 cut(s)	43, 646
ApeKI	GCWGC	4 cut(s)	89, 194, 663, 715
ApoI	RAATTY	1 cut(s)	591
AspLEI	GCGC	1 cut(s)	128
AsuHPI	GGTGA	2 cut(s)	47, 262
BaeGI	GKGCMC	1 cut(s)	469
BalI	TGGCCA	1 cut(s)	45
BanII	GRGCYC	1 cut(s)	187
BbrPI	CACGTG	1 cut(s)	10
Bbv12I	GWGCWC	2 cut(s)	187, 301
BbvI	GCAGC	4 cut(s)	76, 206, 650, 727
BccI	CCATC	2 cut(s)	106, 182
BcoDI	GTCTC	1 cut(s)	226
BfmI	CTRYAG	1 cut(s)	664
BfrI	CTTAAG	1 cut(s)	338
BisI	GCNGC	4 cut(s)	90, 195, 664, 716
BlsI	GCNGC	4 cut(s)	91, 196, 665, 717
BmcAI	AGTACT	1 cut(s)	643
BmrI	ACTGGG	2 cut(s)	320, 747
BmsI	GCATC	1 cut(s)	81
BmuI	ACTGGG	2 cut(s)	320, 747
Bpu10I	CCTNAGC	1 cut(s)	460
BpuEI	CTTGAG	1 cut(s)	272
BsaAI	YACGTR	1 cut(s)	10
BsaWI	WCCGGW	1 cut(s)	151
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bse1I	ACTGG	5 cut(s)	46, 315, 474, 649, 742
Bse3DI	GCAATG	1 cut(s)	132
BseAI	TCCGGA	1 cut(s)	151
BseGI	GGATG	3 cut(s)	72, 98, 303
BseMI	GCAATG	1 cut(s)	132
BseNI	ACTGG	5 cut(s)	46, 315, 474, 649, 742
BseSI	GKGCMC	1 cut(s)	469
BseXI	GCAGC	4 cut(s)	76, 206, 650, 727
Bsh1236I	CGCG	2 cut(s)	126, 562
BshFI	GGCC	2 cut(s)	45, 648
BsiHKAI	GWGCWC	2 cut(s)	187, 301
BsiSI	CCGG	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	226
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	2 cut(s)	45, 648
Bsp1286I	GDGCHC	3 cut(s)	187, 301, 469
Bsp13I	TCCGGA	1 cut(s)	151
Bsp1407I	TGTACA	2 cut(s)	12, 619
Bsp143I	GATC	3 cut(s)	546, 569, 721
BspACI	CCGC	2 cut(s)	124, 447
BspANI	GGCC	2 cut(s)	45, 648
BspEI	TCCGGA	1 cut(s)	151
BspFNI	CGCG	2 cut(s)	126, 562
BspHI	TCATGA	1 cut(s)	490
BspMAI	CTGCAG	1 cut(s)	668
BspPI	GGATC	1 cut(s)	577
BspTI	CTTAAG	1 cut(s)	338
BsrDI	GCAATG	1 cut(s)	132
BsrGI	TGTACA	2 cut(s)	12, 619
BsrI	ACTGG	5 cut(s)	46, 315, 474, 649, 742
BssMI	GATC	3 cut(s)	546, 569, 721
Bst4CI	ACNGT	1 cut(s)	526
Bst6I	CTCTTC	1 cut(s)	208
BstAFI	CTTAAG	1 cut(s)	338
BstAUI	TGTACA	2 cut(s)	12, 619
BstBAI	YACGTR	1 cut(s)	10
BstC8I	GCNNGC	3 cut(s)	399, 709, 713
BstDEI	CTNAG	3 cut(s)	434, 460, 680
BstF5I	GGATG	3 cut(s)	72, 98, 303
BstFNI	CGCG	2 cut(s)	126, 562
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	3 cut(s)	549, 572, 724
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	3 cut(s)	546, 569, 721
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 191
BstNSI	RCATGY	1 cut(s)	556
BstSFI	CTRYAG	1 cut(s)	664
BstSLI	GKGCMC	1 cut(s)	469
BstUI	CGCG	2 cut(s)	126, 562
BstV1I	GCAGC	4 cut(s)	76, 206, 650, 727
BstX2I	RGATCY	1 cut(s)	569
BstYI	RGATCY	1 cut(s)	569
BsuRI	GGCC	2 cut(s)	45, 648
BtsCI	GGATG	3 cut(s)	72, 98, 303
BtsIMutI	CAGTG	2 cut(s)	467, 488
Cac8I	GCNNGC	3 cut(s)	399, 709, 713
CciI	TCATGA	1 cut(s)	490
CfoI	GCGC	1 cut(s)	128
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	4 cut(s)	13, 537, 620, 642
CviQI	GTAC	4 cut(s)	13, 537, 620, 642
DdeI	CTNAG	3 cut(s)	434, 460, 680
DpnI	GATC	3 cut(s)	548, 571, 723
DpnII	GATC	3 cut(s)	546, 569, 721
EaeI	YGGCCR	1 cut(s)	43
Eam1104I	CTCTTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	208
Ecl136II	GAGCTC	1 cut(s)	185
Eco24I	GRGCYC	1 cut(s)	187
Eco32I	GATATC	1 cut(s)	444
Eco53kI	GAGCTC	1 cut(s)	185
Eco72I	CACGTG	1 cut(s)	10
EcoICRI	GAGCTC	1 cut(s)	185
EcoRV	GATATC	1 cut(s)	444
EcoT22I	ATGCAT	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	187
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FauNDI	CATATG	1 cut(s)	726
Fnu4HI	GCNGC	4 cut(s)	90, 195, 664, 716
FokI	GGATG	3 cut(s)	59, 85, 290
FriOI	GRGCYC	1 cut(s)	187
Fsp4HI	GCNGC	4 cut(s)	90, 195, 664, 716
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	4 cut(s)	90, 195, 664, 716
HaeIII	GGCC	2 cut(s)	45, 648
HapII	CCGG	1 cut(s)	152
HgaI	GACGC	1 cut(s)	230
HhaI	GCGC	1 cut(s)	128
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HincII	GTYRAC	1 cut(s)	512
HindII	GTYRAC	1 cut(s)	512
HindIII	AAGCTT	2 cut(s)	109, 341
HinfI	GANTC	1 cut(s)	52
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	2 cut(s)	47, 262
Hpy166II	GTNNAC	3 cut(s)	13, 512, 767
Hpy188I	TCNGA	3 cut(s)	182, 358, 372
Hpy188III	TCNNGA	4 cut(s)	152, 317, 491, 596
Hpy8I	GTNNAC	3 cut(s)	13, 512, 767
HpyAV	CCTTC	3 cut(s)	219, 235, 283
HpyCH4III	ACNGT	1 cut(s)	526
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	7 cut(s)	218, 329, 377, 542, 658, 666, 715
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 191
HpyF3I	CTNAG	3 cut(s)	434, 460, 680
HpySE526I	ACGT	1 cut(s)	9
HspAI	GCGC	1 cut(s)	126
Kpn2I	TCCGGA	1 cut(s)	151
Kzo9I	GATC	3 cut(s)	546, 569, 721
LpnPI	CCDG	9 cut(s)	27, 165, 296, 429, 455, 630, 693, 723, 732
Lsp1109I	GCAGC	4 cut(s)	76, 206, 650, 727
LweI	GCATC	1 cut(s)	81
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	3 cut(s)	548, 571, 723
MboI	GATC	3 cut(s)	546, 569, 721
MboII	GAAGA	3 cut(s)	195, 275, 788
MflI	RGATCY	1 cut(s)	569
MhlI	GDGCHC	3 cut(s)	187, 301, 469
MlsI	TGGCCA	1 cut(s)	45
MluCI	AATT	3 cut(s)	473, 591, 808
MluNI	TGGCCA	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	5 cut(s)	69, 73, 157, 242, 415
Mox20I	TGGCCA	1 cut(s)	45
Mph1103I	ATGCAT	1 cut(s)	379
MroI	TCCGGA	1 cut(s)	151
MscI	TGGCCA	1 cut(s)	45
MseI	TTAA	2 cut(s)	339, 746
Msp20I	TGGCCA	1 cut(s)	45
MspA1I	CMGCKG	1 cut(s)	449
MspCI	CTTAAG	1 cut(s)	338
MspI	CCGG	1 cut(s)	152
Mva1269I	GAATGC	1 cut(s)	379
MvnI	CGCG	2 cut(s)	126, 562
MwoI	GCNNNNNNNGC	2 cut(s)	134, 191
NdeI	CATATG	1 cut(s)	726
NdeII	GATC	3 cut(s)	546, 569, 721
NmuCI	GTSAC	1 cut(s)	424
NsiI	ATGCAT	1 cut(s)	379
NspI	RCATGY	1 cut(s)	556
PagI	TCATGA	1 cut(s)	490
PciI	ACATGT	1 cut(s)	552
PctI	GAATGC	1 cut(s)	379
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	4 cut(s)	91, 196, 665, 717
PmaCI	CACGTG	1 cut(s)	10
PmlI	CACGTG	1 cut(s)	10
Ppu21I	YACGTR	1 cut(s)	10
PscI	ACATGT	1 cut(s)	552
PsiI	TTATAA	2 cut(s)	168, 500
Psp124BI	GAGCTC	1 cut(s)	187
PspCI	CACGTG	1 cut(s)	10
PsrI	GAACNNNNNNTAC	1 cut(s)	28
PstI	CTGCAG	1 cut(s)	668
PsuI	RGATCY	1 cut(s)	569
RsaI	GTAC	4 cut(s)	14, 538, 621, 643
RsaNI	GTAC	4 cut(s)	13, 537, 620, 642
SacI	GAGCTC	1 cut(s)	187
SaqAI	TTAA	2 cut(s)	339, 746
SatI	GCNGC	4 cut(s)	90, 195, 664, 716
Sau3AI	GATC	3 cut(s)	546, 569, 721
ScaI	AGTACT	1 cut(s)	643
SduI	GDGCHC	3 cut(s)	187, 301, 469
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	664
SmlI	CTYRAG	2 cut(s)	287, 338
SmoI	CTYRAG	2 cut(s)	287, 338
Sse9I	AATT	3 cut(s)	473, 591, 808
SsiI	CCGC	2 cut(s)	124, 447
SstI	GAGCTC	1 cut(s)	187
TaaI	ACNGT	1 cut(s)	526
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	2 cut(s)	455, 549
TasI	AATT	3 cut(s)	473, 591, 808
TatI	WGTACW	3 cut(s)	12, 619, 641
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	2 cut(s)	339, 746
Tru9I	TTAA	2 cut(s)	339, 746
TscAI	CASTG	2 cut(s)	474, 488
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	4 cut(s)	89, 194, 663, 715
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	4 cut(s)	17, 479, 615, 713
TspRI	CASTG	2 cut(s)	474, 488
Vha464I	CTTAAG	1 cut(s)	338
XapI	RAATTY	1 cut(s)	591
XceI	RCATGY	1 cut(s)	556
ZrmI	AGTACT	1 cut(s)	643
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.