Rh5CG130200

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0017751
Physical Location & Seq
Reverse (-)
10817771 .. 10818364
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG130200.1

Sequence Viewer

Length: 594 bp
ATGCCAATAAGGCCAAATTCTGTGATTTGGAGGACCCTTCTCGGAGCATGTGTAAATCATAACAATCTTGTGTTGGCTAAGAAAGTGAAGAAGAGGTTGAACAAGCTAGATCGTTATCATGATGGTGATTATGTGCTTTTATCTGATGTTAGGAATTCAATGAGGGCAAGGAAAGTTAACAAGAAAGCTGGTTCTAGTTCAATTAGTGTAGACCAAATCATTCATGAGTTCATTTCAGGGAATAACTCTCATCCCCAATCACAGGATATTAGAGATTTCTTAGACAGAATATTTGAAAGTATAAAAGACACGGGATATACTCCCCTTACATCGAATGTATTGCATGACATTGAAGAGGAGGAGAAGGAGCATACTCTTGGTTATCATAGTGAGAAATTGGCTGTGGCTTTTGCACTTCTGAGTGTCAAGGATACTAGGACCATTAGGGTCATGAAGAATATTCGAATCTGTTGTGACTGCCATTCTTTCATGAAGCATGTTTCAGCCAAATTTGGTAGAGAAATTATTGTTCGCGATCGAAATCTGTTCCATAATTTTATCAATAGATCATGTTCTTGTCAAGATTATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

197

Amino Acids

22.84

Weight (kDa)

9.26

Isoelectric Point (pI)

40.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DYW_deaminase PF14432 105 - 197 1.2e-33 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 210
AccII CGCG 1 cut(s) 534
AcsI RAATTY 3 cut(s) 16, 154, 509
AfiI CCNNNNNNNGG 1 cut(s) 262
AgsI TTSAA 5 cut(s) 100, 159, 201, 296, 353
AluBI AGCT 2 cut(s) 106, 188
AluI AGCT 2 cut(s) 106, 188
AoxI GGCC 1 cut(s) 11
ApoI RAATTY 3 cut(s) 16, 154, 509
ArsI GACNNNNNNTTYG 2 cut(s) 275, 307
AspS9I GGNCC 2 cut(s) 33, 438
AsuHPI GGTGA 1 cut(s) 137
AsuII TTCGAA 1 cut(s) 463
AvaII GGWCC 2 cut(s) 33, 438
BccI CCATC 1 cut(s) 116
BcgI CGANNNNNNTGC 2 cut(s) 322, 356
BciVI GTATCC 1 cut(s) 424
BfaI CTAG 3 cut(s) 107, 195, 435
BfuI GTATCC 1 cut(s) 424
BglI GCCNNNNNGGC 1 cut(s) 10
Bme18I GGWCC 2 cut(s) 33, 438
BmgT120I GGNCC 2 cut(s) 33, 438
BmiI GGNNCC 1 cut(s) 35
Bpu14I TTCGAA 1 cut(s) 463
BsaBI GATNNNNATC 2 cut(s) 114, 540
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 1 cut(s) 262
Bse8I GATNNNNATC 2 cut(s) 114, 540
BseGI GGATG 1 cut(s) 250
BseJI GATNNNNATC 2 cut(s) 114, 540
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMII CTCAG 1 cut(s) 410
BseRI GAGGAG 2 cut(s) 371, 374
Bsh1236I CGCG 1 cut(s) 534
Bsh1285I CGRYCG 1 cut(s) 538
BshFI GGCC 1 cut(s) 13
BsiEI CGRYCG 1 cut(s) 538
BslI CCNNNNNNNGG 1 cut(s) 262
BsnI GGCC 1 cut(s) 13
Bsp119I TTCGAA 1 cut(s) 463
Bsp143I GATC 3 cut(s) 109, 535, 566
Bsp68I TCGCGA 1 cut(s) 534
BspANI GGCC 1 cut(s) 13
BspCNI CTCAG 1 cut(s) 411
BspFNI CGCG 1 cut(s) 534
BspHI TCATGA 4 cut(s) 118, 223, 450, 489
BspLI GGNNCC 1 cut(s) 35
BspT104I TTCGAA 1 cut(s) 463
BssMI GATC 3 cut(s) 109, 535, 566
Bst6I CTCTTC 2 cut(s) 86, 348
BstBI TTCGAA 1 cut(s) 463
BstDEI CTNAG 3 cut(s) 78, 280, 419
BstF5I GGATG 1 cut(s) 250
BstFNI CGCG 1 cut(s) 534
BstKTI GATC 3 cut(s) 112, 538, 569
BstMBI GATC 3 cut(s) 109, 535, 566
BstMCI CGRYCG 1 cut(s) 538
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNSI RCATGY 2 cut(s) 51, 500
BstUI CGCG 1 cut(s) 534
BsuI GTATCC 1 cut(s) 424
BsuRI GGCC 1 cut(s) 13
BtsCI GGATG 1 cut(s) 250
BtuMI TCGCGA 1 cut(s) 534
CciI TCATGA 4 cut(s) 118, 223, 450, 489
Cfr13I GGNCC 2 cut(s) 33, 438
CviAII CATG 8 cut(s) 48, 119, 224, 344, 451, 490, 497, 570
CviJI RGCY 7 cut(s) 13, 77, 106, 188, 401, 407, 506
CviKI_1 RGCY 7 cut(s) 13, 77, 106, 188, 401, 407, 506
DdeI CTNAG 3 cut(s) 78, 280, 419
DpnI GATC 3 cut(s) 111, 537, 568
DpnII GATC 3 cut(s) 109, 535, 566
Eam1104I CTCTTC 2 cut(s) 86, 348
EarI CTCTTC 2 cut(s) 86, 348
Eco47I GGWCC 2 cut(s) 33, 438
EcoO109I RGGNCCY 1 cut(s) 33
EcoRI GAATTC 1 cut(s) 154
FaeI CATG 8 cut(s) 51, 122, 227, 347, 454, 493, 500, 573
FatI CATG 8 cut(s) 47, 118, 223, 343, 450, 489, 496, 569
FblI GTMKAC 1 cut(s) 210
FokI GGATG 1 cut(s) 237
FspBI CTAG 3 cut(s) 107, 195, 435
HaeIII GGCC 1 cut(s) 13
Hin1II CATG 8 cut(s) 51, 122, 227, 347, 454, 493, 500, 573
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HinfI GANTC 1 cut(s) 465
HpaI GTTAAC 1 cut(s) 178
HphI GGTGA 1 cut(s) 137
Hpy166II GTNNAC 2 cut(s) 178, 211
Hpy188I TCNGA 3 cut(s) 44, 145, 420
Hpy188III TCNNGA 6 cut(s) 119, 224, 451, 490, 533, 581
Hpy8I GTNNAC 2 cut(s) 178, 211
HpyAV CCTTC 2 cut(s) 47, 358
HpyCH4V TGCA 2 cut(s) 343, 413
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 3 cut(s) 78, 280, 419
Hsp92II CATG 8 cut(s) 51, 122, 227, 347, 454, 493, 500, 573
KspAI GTTAAC 1 cut(s) 178
Kzo9I GATC 3 cut(s) 109, 535, 566
LmnI GCTCC 2 cut(s) 44, 367
LpnPI CCDG 3 cut(s) 174, 222, 248
MaeI CTAG 3 cut(s) 107, 195, 435
MaeIII GTNAC 1 cut(s) 473
MalI GATC 3 cut(s) 111, 537, 568
MboI GATC 3 cut(s) 109, 535, 566
MboII GAAGA 4 cut(s) 100, 103, 365, 466
MluCI AATT 7 cut(s) 16, 154, 201, 395, 509, 522, 553
MnlI CCTC 5 cut(s) 24, 87, 156, 349, 352
MseI TTAA 1 cut(s) 177
MslI CAYNNNNRTG 1 cut(s) 123
MvnI CGCG 1 cut(s) 534
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 3 cut(s) 109, 535, 566
NlaIII CATG 8 cut(s) 51, 122, 227, 347, 454, 493, 500, 573
NlaIV GGNNCC 1 cut(s) 35
NmuCI GTSAC 1 cut(s) 473
NruI TCGCGA 1 cut(s) 534
NspI RCATGY 2 cut(s) 51, 500
NspV TTCGAA 1 cut(s) 463
PagI TCATGA 4 cut(s) 118, 223, 450, 489
PfeI GAWTC 1 cut(s) 465
Ple19I CGATCG 1 cut(s) 538
PpuMI RGGWCCY 1 cut(s) 33
Psp5II RGGWCCY 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 35
PspPI GGNCC 2 cut(s) 33, 438
PspPPI RGGWCCY 1 cut(s) 33
PvuI CGATCG 1 cut(s) 538
RruI TCGCGA 1 cut(s) 534
RseI CAYNNNNRTG 1 cut(s) 123
SaqAI TTAA 1 cut(s) 177
Sau3AI GATC 3 cut(s) 109, 535, 566
Sau96I GGNCC 2 cut(s) 33, 438
SetI ASST 3 cut(s) 98, 108, 190
SfuI TTCGAA 1 cut(s) 463
SinI GGWCC 2 cut(s) 33, 438
SmiMI CAYNNNNRTG 1 cut(s) 123
Sse9I AATT 7 cut(s) 16, 154, 201, 395, 509, 522, 553
SspI AATATT 2 cut(s) 291, 460
SspMI CTAG 3 cut(s) 107, 195, 435
TaqI TCGA 3 cut(s) 332, 463, 538
TasI AATT 7 cut(s) 16, 154, 201, 395, 509, 522, 553
TfiI GAWTC 1 cut(s) 465
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TseFI GTSAC 1 cut(s) 473
Tsp45I GTSAC 1 cut(s) 473
TspDTI ATGAA 5 cut(s) 212, 220, 467, 478, 506
VpaK11BI GGWCC 2 cut(s) 33, 438
XapI RAATTY 3 cut(s) 16, 154, 509
XceI RCATGY 2 cut(s) 51, 500
XmiI GTMKAC 1 cut(s) 210
XspI CTAG 3 cut(s) 107, 195, 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.