Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006720

Physical Location & Seq

Genomic Coordinates Reverse (-)

6428421 .. 6430796

Gene Structure 2376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G118800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGATGGGTTATGCAAGGAGAAAAGGATTGATGAGGCGGTCTTTTTGTTGGATGAGATGCAACTTGAGGGGTGCATTCCGAGTCCTGTGACATTTAATGTGTTGATTAATGCATTATGCAAGAAGGGTGACTTGGGACGTGCAGCGAAGCTTGTTGATAATATGCTTCTTAAAGGCTGTGTTCCGAATGAAGTGACTTATAACACCCTTATCCACGGTTTGTGTCTCAAGGGTAAGTTGGCTAAGGCAGTTAGTCTTTTGGATAGAATGGTTTCGAATAAATGTGTGCCTAATGATGTGACATATGGTACAATCATCAATGGACTTGTTAAGCGAGGGCGAGCGGTTGATGGGGCTCGAGTGCTGATGTCTATGGAAGAAAGAGGGAATCATGCAAATGAGTATATTTATTCAGTCCTTGTTAGTGGACTGTTCAAGGAGGGAAAATCTGAAGATGCAATGAGATTGTGGAAGGAGATGCTGGAAAAGGGATGTAAACCCAACACCATTGCCTATAGCACTCTTATAAATGGTCTTTGCGGAGAAGGAAAACCAGATGAAGCCAAGGAAGTATTCAGTGAAATGGTGAGTAATGGTTGCATGCCCAATTCCTTCACTTATAGTTCTTTAATGAGAGGTTTCTTCCAGACAGGTCAGAGTCAAAAAGCCATTCTTTTGTGGAAAGAAATGGCAAACAATATGCGTAATGAGGTCTGTTACAGTGTCCTAATTCATGGTTTATGTGAGGATGGTCAACTCAACGAGGCCTTGATCGCCTGGCAGCAGATGTTGGGCAGAGGATATAAACCTGATGTTGTGGCTTACAGTTCAATGATTCATGGCCTTTGCAATGCTGGTTTGGTTGAGCAGGGTTTGAAACTTTTTAATGAAATGCTTTGTCAGGAGCCTGAATGTCAACCAGATGTCATCACTTATAACATACTTTTCAATGTATTCTGCAAGCAGAGTAGCATCTCCCTTGCCATTGATCATTTAAATAGGATGCTGGATCGGGGTTGTGATCCCGACTCAGTTACATGTGACATCTTCCTGAGAAGTTTGAGAGAAAGGCTTGACCCGCCTCAAGATGGGAGGGAGTTCCTAAATGAGCTTGTTGTCCGGCTATTTAAGCAGCAGAGGATAGTAGGTGCTTCCATAATTGTAGAAGTGATGCTGCAAAAGTTTTTGCCACCCAAAGCCTCTACTTGGACAAGGGTTGTACAAGAGCTTTGCAAGCCTAAGATGTTGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0140053 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

418

Amino Acids

46.65

Weight (kDa)

6.55

Isoelectric Point (pI)

28.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20090 AT4G20090
fragaria_vesca	FvH4_3g13070 FvH4_3g13070 FvH4_3g13070 FvH4_3g13070
malus_domestica	MD10G1226600.v1.1
prunus_persica	Prupe.4G118800_v2.0.a1
pyrus_communis	pycom05g22130 pycom05g22140 pycom10g19050
rosa_chinensis	RchiOBHm_Chr5g0021261
rosa_laevigata	RLG00000032600
rosa_multiflora	Rmu_sc0003392.1_g000013 Rmu_sc0004847.1_g000003
rosa_roxburghii	Rroxscaffold_1G00057240
rosa_rugosa	Rorug05G0065600 Rorug05G0065700 Rorug05G0065800 Rorug05G0065900 Rorug05G0065900
rosa_samantha	Rh5AG154600 Rh5BG154400 Rh5CG168000 Rh5DG154700
rosa_wichuraiana	Rw5G013780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	201, 527, 936
AccBSI	CCGCTC	1 cut(s)	344
AciI	CCGC	4 cut(s)	38, 344, 540, 1079
AclWI	GGATC	2 cut(s)	1016, 1017
AcuI	CTGAAG	1 cut(s)	471
AfaI	GTAC	2 cut(s)	310, 1221
AfiI	CCNNNNNNNGG	2 cut(s)	1088, 1206
AflIII	ACRYGT	1 cut(s)	1037
AgsI	TTSAA	4 cut(s)	436, 831, 877, 949
AjiI	CACGTC	1 cut(s)	140
AjnI	CCWGG	1 cut(s)	776
AjuI	GAANNNNNNNTTGG	4 cut(s)	116, 148, 557, 589
AluBI	AGCT	3 cut(s)	151, 1111, 1228
AluI	AGCT	3 cut(s)	151, 1111, 1228
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	2 cut(s)	1016, 1017
Ama87I	CYCGRG	1 cut(s)	357
AoxI	GGCC	2 cut(s)	765, 841
ApeKI	GCWGC	4 cut(s)	143, 781, 1132, 1174
AseI	ATTAAT	1 cut(s)	108
Asp700I	GAANNNNTTC	1 cut(s)	271
AsuHPI	GGTGA	2 cut(s)	140, 598
AsuII	TTCGAA	1 cut(s)	275
AvaI	CYCGRG	1 cut(s)	357
BanII	GRGCYC	1 cut(s)	358
BbvI	GCAGC	4 cut(s)	155, 793, 1144, 1161
BccI	CCATC	3 cut(s)	344, 743, 1082
BciT130I	CCWGG	1 cut(s)	778
BclI	TGATCA	1 cut(s)	988
BcoDI	GTCTC	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	514
BisI	GCNGC	4 cut(s)	144, 782, 1133, 1175
BlsI	GCNGC	4 cut(s)	145, 783, 1134, 1176
Bme1390I	CCNGG	1 cut(s)	778
BmeT110I	CYCGRG	1 cut(s)	357
BmgBI	CACGTC	1 cut(s)	140
BmiI	GGNNCC	1 cut(s)	906
BmrFI	CCNGG	1 cut(s)	778
BmsI	GCATC	6 cut(s)	48, 445, 468, 981, 993, 1161
Bpu10I	CCTNAGC	1 cut(s)	243
Bpu14I	TTCGAA	1 cut(s)	275
BpuEI	CTTGAG	3 cut(s)	86, 212, 1068
BsaJI	CCNNGG	2 cut(s)	214, 564
Bsc4I	CCNNNNNNNGG	2 cut(s)	1088, 1206
Bse3DI	GCAATG	3 cut(s)	465, 507, 856
BseBI	CCWGG	1 cut(s)	778
BseDI	CCNNGG	2 cut(s)	214, 564
BseGI	GGATG	5 cut(s)	10, 58, 497, 754, 1008
BseLI	CCNNNNNNNGG	2 cut(s)	1088, 1206
BseMI	GCAATG	3 cut(s)	465, 507, 856
BseMII	CTCAG	2 cut(s)	1043, 1044
BseXI	GCAGC	4 cut(s)	155, 793, 1144, 1161
BsgI	GTGCAG	1 cut(s)	162
BshFI	GGCC	2 cut(s)	767, 843
BsiHKCI	CYCGRG	1 cut(s)	357
BsiSI	CCGG	1 cut(s)	1120
BslFI	GGGAC	1 cut(s)	150
BslI	CCNNNNNNNGG	2 cut(s)	1088, 1206
BsmAI	GTCTC	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	150
BsmI	GAATGC	1 cut(s)	75
BsnI	GGCC	2 cut(s)	767, 843
BsoBI	CYCGRG	1 cut(s)	357
Bsp119I	TTCGAA	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp1407I	TGTACA	1 cut(s)	1219
Bsp143I	GATC	4 cut(s)	771, 988, 1009, 1021
BspACI	CCGC	4 cut(s)	38, 344, 540, 1079
BspANI	GGCC	2 cut(s)	767, 843
BspCNI	CTCAG	2 cut(s)	1043, 1044
BspLI	GGNNCC	1 cut(s)	906
BspPI	GGATC	2 cut(s)	1016, 1017
BspT104I	TTCGAA	1 cut(s)	275
BsrBI	CCGCTC	1 cut(s)	344
BsrDI	GCAATG	3 cut(s)	465, 507, 856
BsrGI	TGTACA	1 cut(s)	1219
BssECI	CCNNGG	2 cut(s)	214, 564
BssMI	GATC	4 cut(s)	771, 988, 1009, 1021
BssT1I	CCWWGG	1 cut(s)	564
Bst2UI	CCWGG	1 cut(s)	778
Bst4CI	ACNGT	4 cut(s)	218, 432, 722, 827
BstAUI	TGTACA	1 cut(s)	1219
BstBI	TTCGAA	1 cut(s)	275
BstC8I	GCNNGC	4 cut(s)	342, 602, 962, 1235
BstDEI	CTNAG	4 cut(s)	243, 1030, 1052, 1239
BstDSI	CCRYGG	1 cut(s)	214
BstF5I	GGATG	5 cut(s)	10, 58, 497, 754, 1008
BstKTI	GATC	4 cut(s)	774, 991, 1012, 1024
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	4 cut(s)	771, 988, 1009, 1021
BstMWI	GCNNNNNNNGC	4 cut(s)	773, 1078, 1129, 1234
BstNI	CCWGG	1 cut(s)	778
BstNSI	RCATGY	2 cut(s)	604, 1041
BstSCI	CCNGG	1 cut(s)	776
BstSFI	CTRYAG	1 cut(s)	514
BstV1I	GCAGC	4 cut(s)	155, 793, 1144, 1161
BsuRI	GGCC	2 cut(s)	767, 843
BtgI	CCRYGG	1 cut(s)	214
BtrI	CACGTC	1 cut(s)	140
BtsCI	GGATG	5 cut(s)	10, 58, 497, 754, 1008
BtsIMutI	CAGTG	2 cut(s)	583, 727
Cac8I	GCNNGC	4 cut(s)	342, 602, 962, 1235
Csp6I	GTAC	2 cut(s)	309, 1220
CviAII	CATG	5 cut(s)	392, 601, 734, 839, 1038
CviQI	GTAC	2 cut(s)	309, 1220
DdeI	CTNAG	4 cut(s)	243, 1030, 1052, 1239
DpnI	GATC	4 cut(s)	773, 990, 1011, 1023
DpnII	GATC	4 cut(s)	771, 988, 1009, 1021
DraI	TTTAAA	1 cut(s)	996
Eco130I	CCWWGG	1 cut(s)	564
Eco147I	AGGCCT	1 cut(s)	767
Eco24I	GRGCYC	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	471
Eco88I	CYCGRG	1 cut(s)	357
EcoRII	CCWGG	1 cut(s)	776
EcoT14I	CCWWGG	1 cut(s)	564
EcoT22I	ATGCAT	1 cut(s)	115
EcoT38I	GRGCYC	1 cut(s)	358
ErhI	CCWWGG	1 cut(s)	564
FaeI	CATG	5 cut(s)	395, 604, 737, 842, 1041
FalI	AAGNNNNNCTT	4 cut(s)	116, 148, 657, 689
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	5 cut(s)	391, 600, 733, 838, 1037
FauI	CCCGC	1 cut(s)	1086
FauNDI	CATATG	1 cut(s)	304
FbaI	TGATCA	1 cut(s)	988
Fnu4HI	GCNGC	4 cut(s)	144, 782, 1133, 1175
FokI	GGATG	5 cut(s)	17, 65, 504, 761, 1015
FriOI	GRGCYC	1 cut(s)	358
Fsp4HI	GCNGC	4 cut(s)	144, 782, 1133, 1175
GluI	GCNGC	4 cut(s)	144, 782, 1133, 1175
HaeIII	GGCC	2 cut(s)	767, 843
HapII	CCGG	1 cut(s)	1120
Hin1II	CATG	5 cut(s)	395, 604, 737, 842, 1041
HincII	GTYRAC	2 cut(s)	755, 917
HindII	GTYRAC	2 cut(s)	755, 917
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	5 cut(s)	82, 388, 658, 835, 1028
HpaII	CCGG	1 cut(s)	1120
HphI	GGTGA	2 cut(s)	140, 598
Hpy166II	GTNNAC	4 cut(s)	428, 497, 755, 917
Hpy188I	TCNGA	4 cut(s)	81, 186, 451, 657
Hpy188III	TCNNGA	5 cut(s)	646, 902, 1025, 1051, 1085
Hpy8I	GTNNAC	4 cut(s)	428, 497, 755, 917
HpyAV	CCTTC	4 cut(s)	118, 466, 539, 622
HpyCH4III	ACNGT	4 cut(s)	218, 432, 722, 827
HpyCH4IV	ACGT	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	4 cut(s)	773, 1078, 1129, 1234
HpyF3I	CTNAG	4 cut(s)	243, 1030, 1052, 1239
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	5 cut(s)	395, 604, 737, 842, 1041
Ksp22I	TGATCA	1 cut(s)	988
Kzo9I	GATC	4 cut(s)	771, 988, 1009, 1021
LmnI	GCTCC	1 cut(s)	904
Lsp1109I	GCAGC	4 cut(s)	155, 793, 1144, 1161
LweI	GCATC	6 cut(s)	48, 445, 468, 981, 993, 1161
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	7 cut(s)	88, 128, 193, 298, 716, 1033, 1040
MalI	GATC	4 cut(s)	773, 990, 1011, 1023
MbiI	CCGCTC	1 cut(s)	344
MboI	GATC	4 cut(s)	771, 988, 1009, 1021
MboII	GAAGA	4 cut(s)	389, 464, 634, 1039
MhlI	GDGCHC	1 cut(s)	358
MluCI	AATT	3 cut(s)	607, 729, 1158
MlyI	GAGTC	3 cut(s)	91, 667, 1022
MmeI	TCCRAC	1 cut(s)	30
Mph1103I	ATGCAT	1 cut(s)	115
MroXI	GAANNNNTTC	1 cut(s)	271
MseI	TTAA	8 cut(s)	96, 108, 171, 330, 629, 885, 995, 1128
MslI	CAYNNNNRTG	1 cut(s)	396
MspI	CCGG	1 cut(s)	1120
MspR9I	CCNGG	1 cut(s)	778
Mva1269I	GAATGC	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	778
MwoI	GCNNNNNNNGC	4 cut(s)	773, 1078, 1129, 1234
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	4 cut(s)	771, 988, 1009, 1021
NlaIII	CATG	5 cut(s)	395, 604, 737, 842, 1041
NlaIV	GGNNCC	1 cut(s)	906
NmuCI	GTSAC	5 cut(s)	88, 128, 193, 298, 1040
NsiI	ATGCAT	1 cut(s)	115
NspI	RCATGY	2 cut(s)	604, 1041
NspV	TTCGAA	1 cut(s)	275
PaeI	GCATGC	1 cut(s)	604
PaeR7I	CTCGAG	1 cut(s)	357
PceI	AGGCCT	1 cut(s)	767
PciI	ACATGT	1 cut(s)	1037
PctI	GAATGC	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	271
PfeI	GAWTC	2 cut(s)	388, 835
PkrI	GCNGC	4 cut(s)	145, 783, 1134, 1176
PleI	GAGTC	3 cut(s)	90, 666, 1022
PpsI	GAGTC	3 cut(s)	90, 666, 1022
PscI	ACATGT	1 cut(s)	1037
PshBI	ATTAAT	1 cut(s)	108
PsiI	TTATAA	3 cut(s)	201, 527, 936
Psp6I	CCWGG	1 cut(s)	776
PspGI	CCWGG	1 cut(s)	776
PspN4I	GGNNCC	1 cut(s)	906
PspXI	VCTCGAGB	1 cut(s)	357
RsaI	GTAC	2 cut(s)	310, 1221
RsaNI	GTAC	2 cut(s)	309, 1220
RseI	CAYNNNNRTG	1 cut(s)	396
SaqAI	TTAA	8 cut(s)	96, 108, 171, 330, 629, 885, 995, 1128
SatI	GCNGC	4 cut(s)	144, 782, 1133, 1175
Sau3AI	GATC	4 cut(s)	771, 988, 1009, 1021
SchI	GAGTC	3 cut(s)	91, 667, 1022
ScrFI	CCNGG	1 cut(s)	778
SduI	GDGCHC	1 cut(s)	358
SetI	ASST	9 cut(s)	142, 153, 640, 655, 714, 811, 1113, 1150, 1230
SfaNI	GCATC	6 cut(s)	48, 445, 468, 981, 993, 1161
SfcI	CTRYAG	1 cut(s)	514
Sfr274I	CTCGAG	1 cut(s)	357
SfuI	TTCGAA	1 cut(s)	275
SlaI	CTCGAG	1 cut(s)	357
SmiI	ATTTAAAT	1 cut(s)	996
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	4 cut(s)	65, 227, 357, 1083
SmoI	CTYRAG	4 cut(s)	65, 227, 357, 1083
SphI	GCATGC	1 cut(s)	604
Sse9I	AATT	3 cut(s)	607, 729, 1158
SseBI	AGGCCT	1 cut(s)	767
SsiI	CCGC	4 cut(s)	38, 344, 540, 1079
StuI	AGGCCT	1 cut(s)	767
StyD4I	CCNGG	1 cut(s)	776
StyI	CCWWGG	1 cut(s)	564
SwaI	ATTTAAAT	1 cut(s)	996
TaaI	ACNGT	4 cut(s)	218, 432, 722, 827
TaiI	ACGT	1 cut(s)	142
TaqI	TCGA	2 cut(s)	275, 358
TasI	AATT	3 cut(s)	607, 729, 1158
TatI	WGTACW	1 cut(s)	1219
TfiI	GAWTC	2 cut(s)	388, 835
Tru1I	TTAA	8 cut(s)	96, 108, 171, 330, 629, 885, 995, 1128
Tru9I	TTAA	8 cut(s)	96, 108, 171, 330, 629, 885, 995, 1128
TscAI	CASTG	2 cut(s)	583, 727
TseFI	GTSAC	5 cut(s)	88, 128, 193, 298, 1040
TseI	GCWGC	4 cut(s)	143, 781, 1132, 1174
Tsp45I	GTSAC	5 cut(s)	88, 128, 193, 298, 1040
TspDTI	ATGAA	5 cut(s)	204, 573, 722, 827, 903
TspRI	CASTG	2 cut(s)	583, 727
VspI	ATTAAT	1 cut(s)	108
XceI	RCATGY	2 cut(s)	604, 1041
XhoI	CTCGAG	1 cut(s)	357
XmnI	GAANNNNTTC	1 cut(s)	271
Zsp2I	ATGCAT	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.