Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006720

Physical Location & Seq

Genomic Coordinates Reverse (-)

16297201 .. 16303441

Gene Structure 6241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G013780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1965 bp

ATGCCAAAATGCCCAACTCACTACTCAAAGCTCCTCACCTCCTCAATCCACCAACGCCTCAAGAATCACACCCTCTTCCCAATTGACCTCTCATCTCCTTTACTCCAATCTCACCTCTCATCTCTTTCAGTTCCTTCAGACAATGACGAACCAGAGCCCCCAATTTCCGACGAAATCTTCAGGAAAGGTCCGAACTTTGGGTCGTACAAGTCAGGTGATTCAACTTTCTATTCACTCATTGAGAACTATGCGAGTCTGGGGGATTTTGGGTCCTTGGAGAAGGTTCTGGATCGAATGAAACGCGAAAGGAGAGTCTTTATTGAGAGGAGTTTCATTGCTGTGTTTAGAGCTTTTGGGAAAGCACATTTGCCCAATAAAGCTGTAGACTTGTTTCATAGAATGGTAGATGAATTTCAGTGTAGGAGGACTGTTAAGTCGTTTAATTCGGTTCTTAATGTTATTGTACAGGAGGGTCATTATGCCCATGCATTGGAGTTTTATGATCATGTTGTTGGTGATAGAAACATGAATATTTCGCCGAATGTGCTTAGTTATAATTTGATTATCAAGGCCATGTGTAGGTTTGGATTGGTTGATAAGGCTGTCGAAAAGTTTAGGGAAATGCCGGTCAGGGATTGTGCTCCTGACGTGTTTACGTATTGTACATTGATGGATGGGTTGTGCAAGGTGAATAGGATTGACGAGGCCGTGTTTTTGTTGGATGAGATGCAGATTGAGGGCTGCTCTCCGAGTCCTGCAATGTTCAACGTGTTGATTGATGCAGTGTGCAAGAATGGTGACTTGGGCCGTGCGGCGAAGCTTGTTGATAATATGTTTCTTAAGGGGTGTGTTCCCAATGAAGTGACTTATAACACACTTATACATGGTTTGTGTCTCCAGGGGAAGTTGCAGAAGGCAGTGAGTCTTTTGGATAGAATGGTTTTGAATAAGTGTGTGCCCAATGATGTCACCTACGGGACAATCATCAATGGACTTGTTAAGCAAGGACGATCTCTTGATGGAGCTCGAGTGTTGATATCTATGGAAGAAAGAGGGCGTCGTGCAAATGAGTATATATATTCAGTTCTTGTTAGTGGATTGTTCAAGGAGGGAAAATCTGAAGAGGCAATGAAATTGTGGAAGGAGATGATGGAAAAGGGATGTAAACCCAACACCGTGGTGTATAGTGCTCTTATAGATGGTCTTTGTTTGGATGGAAAACCTGATGAAGCTAAGGAAGTATTCTGTGAGATGGTGCATAATGGTTGCATGCCCAATTCCTATACTTATAGTTCCTTAATGAAGGGTTTCTTCCAGGCAGGTCAGGGTCATCAAGCAATTCTTTTGTGGAAAGAAATGACAGACAATAATGTTATACGTAATGAGGTCTGTTACAGTGTCATAATTCATGGTTTTTGCAAGGAGGGGAAAGTTAAAGAGGCCTTGATGGTGTGGAAGCAGATGCTTGCCAGAGGATATAAACCAGATGTTGTGGCTTATAGCTCAATGATTCATGGCCTTTGCAACGATGGATTGGTTGAGCAGGGTTTGAAACTTTTTAACGAAATGCTTTCTCAGGAACCTGAATGTCAGCCCGATGTCATCACTTATAACATACTTTTATATGCTCTCTGCAAGCAGCGTACCATCTCACGTGCCGTTGATCTTTTAAACAGTATGCTGGATCGGGGCTGTGATCCTGACTTAGTTACTTGTGACATCTTCCTAACAACTTTGGGAGAAAAGCTCGACCCACCTCAAGATGGGAGGGAGTTCCTAAATGAGCTAGTTGTCCGGCTAATTAAGCGGCAGAGGATAGTAGGTGCTTCCAGAATTGTCGAAGTGATGCTGAAAAAGTTTTTGCCGCCAACAGCCTCTACTTGGACAAGAGTCGTACAAGAGCTTTGTAAGCCTAAGAAGGTTAGAGCAGCCATTGACAAATGTTGGAGCAGCCTATATTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0140053 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

654

Amino Acids

73.91

Weight (kDa)

7.89

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	177 - 208	6.8e-10	PPR repeat
PPR_2	PF13041	180 - 229	5.6e-16	PPR repeat family
PPR_1	PF12854	212 - 244	8.6e-12	PPR repeat
PPR	PF01535	218 - 248	1.7e-06	PPR repeat
PPR_long	PF17177	233 - 337	4e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	247 - 278	6.1e-07	PPR repeat
PPR_2	PF13041	254 - 298	4.2e-14	PPR repeat family
PPR_3	PF13812	273 - 333	4e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	281 - 314	1e-14	PPR repeat
PPR_2	PF13041	285 - 334	1.8e-16	PPR repeat family
PPR	PF01535	288 - 318	1.6e-07	PPR repeat
PPR_2	PF13041	323 - 369	1.5e-06	PPR repeat family
PPR_3	PF13812	344 - 400	5.6e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	356 - 403	7.1e-15	PPR repeat family
PPR	PF01535	359 - 388	1.6e-07	PPR repeat
PPR_1	PF12854	386 - 419	8.1e-13	PPR repeat
PPR_2	PF13041	390 - 438	8.1e-17	PPR repeat family
PPR	PF01535	393 - 423	1.4e-08	PPR repeat
PPR_long	PF17177	409 - 494	7.3e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	421 - 454	1.2e-06	PPR repeat
PPR_2	PF13041	432 - 474	7.8e-09	PPR repeat family
PPR_1	PF12854	459 - 488	4.9e-09	PPR repeat
PPR_2	PF13041	461 - 509	4.8e-17	PPR repeat family
PPR	PF01535	463 - 492	2e-07	PPR repeat
PPR_1	PF12854	491 - 523	4.9e-11	PPR repeat
PPR_2	PF13041	495 - 546	1.1e-15	PPR repeat family
PPR	PF01535	498 - 525	1.1e-06	PPR repeat
PPR_1	PF12854	530 - 560	6.2e-08	PPR repeat
PPR_2	PF13041	532 - 579	2.2e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20090 AT4G20090
fragaria_vesca	FvH4_3g13070 FvH4_3g13070 FvH4_3g13070 FvH4_3g13070
malus_domestica	MD10G1226600.v1.1
prunus_persica	Prupe.4G118800_v2.0.a1
pyrus_communis	pycom05g22130 pycom05g22140 pycom10g19050
rosa_chinensis	RchiOBHm_Chr5g0021261
rosa_laevigata	RLG00000032600
rosa_multiflora	Rmu_sc0003392.1_g000013 Rmu_sc0004847.1_g000003
rosa_roxburghii	Rroxscaffold_1G00057240
rosa_rugosa	Rorug05G0065600 Rorug05G0065700 Rorug05G0065800 Rorug05G0065900 Rorug05G0065900
rosa_samantha	Rh5AG154600 Rh5BG154400 Rh5CG168000 Rh5DG154700
rosa_wichuraiana	Rw5G013780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	555, 870, 1611
AasI	GACNNNNNNGTC	1 cut(s)	433
Acc36I	ACCTGC	1 cut(s)	1310
AccB7I	CCANNNNNTGG	1 cut(s)	490
AccI	GTMKAC	1 cut(s)	384
AccII	CGCG	1 cut(s)	303
AciI	CCGC	3 cut(s)	812, 1807, 1865
AclWI	GGATC	3 cut(s)	297, 1691, 1692
AcsI	RAATTY	1 cut(s)	410
AcuI	CTGAAG	3 cut(s)	120, 163, 1140
AcvI	CACGTG	1 cut(s)	1655
AcyI	GRCGYC	1 cut(s)	1057
AfaI	GTAC	5 cut(s)	206, 465, 664, 1645, 1896
AfiI	CCNNNNNNNGG	5 cut(s)	197, 490, 579, 1763, 1881
AflII	CTTAAG	1 cut(s)	839
AflIII	ACRYGT	2 cut(s)	648, 768
AgsI	TTSAA	5 cut(s)	222, 766, 946, 1105, 1552
AjiI	CACGTC	1 cut(s)	649
AjnI	CCWGG	2 cut(s)	897, 1314
AjuI	GAANNNNNNNTTGG	2 cut(s)	785, 817
AleI	CACNNNNGTG	1 cut(s)	1178
Alw21I	GWGCWC	3 cut(s)	643, 1027, 1192
Alw26I	GTCTC	1 cut(s)	899
AlwI	GGATC	3 cut(s)	297, 1691, 1692
Ama87I	CYCGRG	1 cut(s)	1026
AoxI	GGCC	5 cut(s)	570, 705, 805, 1440, 1516
ApeKI	GCWGC	4 cut(s)	741, 1639, 1928, 1950
ApoI	RAATTY	1 cut(s)	410
ArsI	GACNNNNNNTTYG	4 cut(s)	185, 217, 297, 329
Asp700I	GAANNNNTTC	1 cut(s)	1307
AspS9I	GGNCC	3 cut(s)	188, 270, 805
AsuHPI	GGTGA	7 cut(s)	28, 104, 227, 527, 700, 809, 961
AvaI	CYCGRG	1 cut(s)	1026
AvaII	GGWCC	2 cut(s)	188, 270
BaeGI	GKGCMC	1 cut(s)	960
BanII	GRGCYC	2 cut(s)	159, 1027
BbrPI	CACGTG	1 cut(s)	1655
Bbv12I	GWGCWC	3 cut(s)	643, 1027, 1192
BbvI	GCAGC	3 cut(s)	728, 1651, 1940
BceAI	ACGGC	3 cut(s)	692, 792, 1643
BciT130I	CCWGG	2 cut(s)	899, 1316
BclI	TGATCA	1 cut(s)	502
BcoDI	GTCTC	1 cut(s)	899
BfaI	CTAG	1 cut(s)	1787
BfmI	CTRYAG	1 cut(s)	381
BfrI	CTTAAG	1 cut(s)	839
BfuAI	ACCTGC	1 cut(s)	1310
BisI	GCNGC	7 cut(s)	742, 813, 1640, 1808, 1865, 1929, 1951
BlsI	GCNGC	7 cut(s)	743, 814, 1641, 1809, 1866, 1930, 1952
Bme1390I	CCNGG	2 cut(s)	899, 1316
Bme18I	GGWCC	2 cut(s)	188, 270
BmeT110I	CYCGRG	1 cut(s)	1026
BmgBI	CACGTC	1 cut(s)	649
BmgT120I	GGNCC	3 cut(s)	188, 270, 805
BmiI	GGNNCC	2 cut(s)	271, 1581
BmrFI	CCNGG	2 cut(s)	899, 1316
BmsI	GCATC	4 cut(s)	717, 769, 1452, 1836
BoxI	GACNNNNGTC	1 cut(s)	1889
BplI	GAGNNNNNCTC	4 cut(s)	728, 760, 1731, 1763
BpmI	CTGGAG	1 cut(s)	881
Bpu10I	CCTNAGC	1 cut(s)	1233
BpuEI	CTTGAG	2 cut(s)	44, 1743
BsaAI	YACGTR	3 cut(s)	657, 1379, 1655
BsaHI	GRCGYC	1 cut(s)	1057
BsaJI	CCNNGG	3 cut(s)	273, 898, 1176
BsaXI	ACNNNNNCTCC	2 cut(s)	1014, 1044
Bsc4I	CCNNNNNNNGG	5 cut(s)	197, 490, 579, 1763, 1881
Bse118I	RCCGGY	1 cut(s)	625
Bse3DI	GCAATG	3 cut(s)	333, 765, 1134
BseBI	CCWGG	2 cut(s)	899, 1316
BseDI	CCNNGG	3 cut(s)	273, 898, 1176
BseGI	GGATG	4 cut(s)	679, 727, 1166, 1219
BseLI	CCNNNNNNNGG	5 cut(s)	197, 490, 579, 1763, 1881
BseMI	GCAATG	3 cut(s)	333, 765, 1134
BseMII	CTCAG	1 cut(s)	1589
BseRI	GAGGAG	3 cut(s)	23, 31, 340
BseSI	GKGCMC	1 cut(s)	960
BseXI	GCAGC	3 cut(s)	728, 1651, 1940
Bsh1236I	CGCG	1 cut(s)	303
BshFI	GGCC	5 cut(s)	572, 707, 807, 1442, 1518
BsiHKAI	GWGCWC	3 cut(s)	643, 1027, 1192
BsiHKCI	CYCGRG	1 cut(s)	1026
BsiSI	CCGG	2 cut(s)	626, 1795
BslFI	GGGAC	1 cut(s)	991
BslI	CCNNNNNNNGG	5 cut(s)	197, 490, 579, 1763, 1881
BsmAI	GTCTC	1 cut(s)	899
BsmFI	GGGAC	1 cut(s)	991
BsnI	GGCC	5 cut(s)	572, 707, 807, 1442, 1518
BsoBI	CYCGRG	1 cut(s)	1026
Bsp1286I	GDGCHC	5 cut(s)	159, 643, 960, 1027, 1192
Bsp1407I	TGTACA	2 cut(s)	463, 662
Bsp143I	GATC	6 cut(s)	289, 502, 1010, 1663, 1684, 1696
BspACI	CCGC	3 cut(s)	812, 1807, 1865
BspANI	GGCC	5 cut(s)	572, 707, 807, 1442, 1518
BspCNI	CTCAG	1 cut(s)	1588
BspFNI	CGCG	1 cut(s)	303
BspLI	GGNNCC	2 cut(s)	271, 1581
BspMI	ACCTGC	1 cut(s)	1310
BspPI	GGATC	3 cut(s)	297, 1691, 1692
BspTI	CTTAAG	1 cut(s)	839
BsrDI	GCAATG	3 cut(s)	333, 765, 1134
BsrFI	RCCGGY	1 cut(s)	625
BsrGI	TGTACA	2 cut(s)	463, 662
BssAI	RCCGGY	1 cut(s)	625
BssECI	CCNNGG	3 cut(s)	273, 898, 1176
BssMI	GATC	6 cut(s)	289, 502, 1010, 1663, 1684, 1696
BssNI	GRCGYC	1 cut(s)	1057
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	2 cut(s)	899, 1316
Bst4CI	ACNGT	4 cut(s)	430, 1177, 1397, 1676
Bst6I	CTCTTC	2 cut(s)	80, 1116
BstACI	GRCGYC	1 cut(s)	1057
BstAFI	CTTAAG	1 cut(s)	839
BstAUI	TGTACA	2 cut(s)	463, 662
BstBAI	YACGTR	3 cut(s)	657, 1379, 1655
BstC8I	GCNNGC	3 cut(s)	1271, 1467, 1637
BstDEI	CTNAG	5 cut(s)	548, 1233, 1575, 1705, 1914
BstDSI	CCRYGG	1 cut(s)	1176
BstF5I	GGATG	4 cut(s)	679, 727, 1166, 1219
BstFNI	CGCG	1 cut(s)	303
BstKTI	GATC	6 cut(s)	292, 505, 1013, 1666, 1687, 1699
BstMAI	GTCTC	1 cut(s)	899
BstMBI	GATC	6 cut(s)	289, 502, 1010, 1663, 1684, 1696
BstMWI	GCNNNNNNNGC	4 cut(s)	544, 1804, 1909, 1959
BstNI	CCWGG	2 cut(s)	899, 1316
BstNSI	RCATGY	1 cut(s)	1273
BstPAI	GACNNNNGTC	1 cut(s)	1889
BstSCI	CCNGG	2 cut(s)	897, 1314
BstSFI	CTRYAG	1 cut(s)	381
BstSLI	GKGCMC	1 cut(s)	960
BstSNI	TACGTA	2 cut(s)	657, 1379
BstUI	CGCG	1 cut(s)	303
BstV1I	GCAGC	3 cut(s)	728, 1651, 1940
BstXI	CCANNNNNNTGG	1 cut(s)	1177
BsuRI	GGCC	5 cut(s)	572, 707, 807, 1442, 1518
BtgI	CCRYGG	1 cut(s)	1176
BtrI	CACGTC	1 cut(s)	649
BtsCI	GGATG	4 cut(s)	679, 727, 1166, 1219
BtsI	GCAGTG	2 cut(s)	789, 924
BtsIMutI	CAGTG	4 cut(s)	422, 789, 924, 1402
BveI	ACCTGC	1 cut(s)	1310
Cac8I	GCNNGC	3 cut(s)	1271, 1467, 1637
Cfr10I	RCCGGY	1 cut(s)	625
Cfr13I	GGNCC	3 cut(s)	188, 270, 805
CseI	GACGC	1 cut(s)	1046
Csp6I	GTAC	5 cut(s)	205, 464, 663, 1644, 1895
CviAII	CATG	8 cut(s)	485, 506, 526, 574, 884, 1270, 1409, 1514
CviQI	GTAC	5 cut(s)	205, 464, 663, 1644, 1895
DdeI	CTNAG	5 cut(s)	548, 1233, 1575, 1705, 1914
DpnI	GATC	6 cut(s)	291, 504, 1012, 1665, 1686, 1698
DpnII	GATC	6 cut(s)	289, 502, 1010, 1663, 1684, 1696
DraI	TTTAAA	1 cut(s)	1671
DrdI	GACNNNNNNGTC	1 cut(s)	433
DseDI	GACNNNNNNGTC	1 cut(s)	433
Eam1104I	CTCTTC	2 cut(s)	80, 1116
EarI	CTCTTC	2 cut(s)	80, 1116
Ecl136II	GAGCTC	1 cut(s)	1025
Eco105I	TACGTA	2 cut(s)	657, 1379
Eco130I	CCWWGG	1 cut(s)	273
Eco147I	AGGCCT	1 cut(s)	1442
Eco24I	GRGCYC	2 cut(s)	159, 1027
Eco32I	GATATC	1 cut(s)	1038
Eco47I	GGWCC	2 cut(s)	188, 270
Eco53kI	GAGCTC	1 cut(s)	1025
Eco57I	CTGAAG	3 cut(s)	120, 163, 1140
Eco72I	CACGTG	1 cut(s)	1655
Eco88I	CYCGRG	1 cut(s)	1026
EcoICRI	GAGCTC	1 cut(s)	1025
EcoO109I	RGGNCCY	1 cut(s)	270
EcoRII	CCWGG	2 cut(s)	897, 1314
EcoRV	GATATC	1 cut(s)	1038
EcoT14I	CCWWGG	1 cut(s)	273
EcoT22I	ATGCAT	1 cut(s)	490
EcoT38I	GRGCYC	2 cut(s)	159, 1027
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	8 cut(s)	488, 509, 529, 577, 887, 1273, 1412, 1517
FalI	AAGNNNNNCTT	4 cut(s)	1295, 1327, 1326, 1358
FaqI	GGGAC	1 cut(s)	991
FatI	CATG	8 cut(s)	484, 505, 525, 573, 883, 1269, 1408, 1513
FbaI	TGATCA	1 cut(s)	502
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	7 cut(s)	742, 813, 1640, 1808, 1865, 1929, 1951
FokI	GGATG	4 cut(s)	686, 734, 1173, 1226
FriOI	GRGCYC	2 cut(s)	159, 1027
Fsp4HI	GCNGC	7 cut(s)	742, 813, 1640, 1808, 1865, 1929, 1951
FspBI	CTAG	1 cut(s)	1787
GluI	GCNGC	7 cut(s)	742, 813, 1640, 1808, 1865, 1929, 1951
GsuI	CTGGAG	1 cut(s)	881
HaeIII	GGCC	5 cut(s)	572, 707, 807, 1442, 1518
HapII	CCGG	2 cut(s)	626, 1795
HgaI	GACGC	1 cut(s)	1046
Hin1I	GRCGYC	1 cut(s)	1057
Hin1II	CATG	8 cut(s)	488, 509, 529, 577, 887, 1273, 1412, 1517
HindIII	AAGCTT	1 cut(s)	818
HinfI	GANTC	8 cut(s)	64, 218, 253, 312, 751, 922, 1510, 1890
HpaII	CCGG	2 cut(s)	626, 1795
HphI	GGTGA	7 cut(s)	28, 104, 227, 527, 700, 809, 961
Hpy166II	GTNNAC	3 cut(s)	385, 654, 1166
Hpy188I	TCNGA	5 cut(s)	139, 169, 192, 750, 1120
Hpy188III	TCNNGA	9 cut(s)	61, 181, 287, 644, 1016, 1577, 1700, 1760, 1830
Hpy8I	GTNNAC	3 cut(s)	385, 654, 1166
Hpy99I	CGWCG	2 cut(s)	173, 1062
HpyAV	CCTTC	6 cut(s)	144, 274, 907, 1135, 1297, 1912
HpyCH4III	ACNGT	4 cut(s)	430, 1177, 1397, 1676
HpyCH4IV	ACGT	5 cut(s)	648, 656, 768, 1378, 1654
HpyF10VI	GCNNNNNNNGC	4 cut(s)	544, 1804, 1909, 1959
HpyF3I	CTNAG	5 cut(s)	548, 1233, 1575, 1705, 1914
HpySE526I	ACGT	5 cut(s)	648, 656, 768, 1378, 1654
Hsp92I	GRCGYC	1 cut(s)	1057
Hsp92II	CATG	8 cut(s)	488, 509, 529, 577, 887, 1273, 1412, 1517
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	6 cut(s)	289, 502, 1010, 1663, 1684, 1696
LmnI	GCTCC	4 cut(s)	36, 646, 1022, 1947
Lsp1109I	GCAGC	3 cut(s)	728, 1651, 1940
LweI	GCATC	4 cut(s)	717, 769, 1452, 1836
MaeI	CTAG	1 cut(s)	1787
MaeII	ACGT	5 cut(s)	648, 656, 768, 1378, 1654
MaeIII	GTNAC	6 cut(s)	797, 862, 967, 1391, 1708, 1715
MalI	GATC	6 cut(s)	291, 504, 1012, 1665, 1686, 1698
MboI	GATC	6 cut(s)	289, 502, 1010, 1663, 1684, 1696
MboII	GAAGA	6 cut(s)	67, 169, 1058, 1133, 1303, 1714
MfeI	CAATTG	1 cut(s)	81
MhlI	GDGCHC	5 cut(s)	159, 643, 960, 1027, 1192
MlyI	GAGTC	5 cut(s)	262, 321, 760, 931, 1899
MmeI	TCCRAC	3 cut(s)	192, 699, 1925
Mph1103I	ATGCAT	1 cut(s)	490
MroXI	GAANNNNTTC	1 cut(s)	1307
MslI	CAYNNNNRTG	2 cut(s)	338, 1178
MspCI	CTTAAG	1 cut(s)	839
MspI	CCGG	2 cut(s)	626, 1795
MspR9I	CCNGG	2 cut(s)	899, 1316
MunI	CAATTG	1 cut(s)	81
MvaI	CCWGG	2 cut(s)	899, 1316
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	4 cut(s)	544, 1804, 1909, 1959
NdeII	GATC	6 cut(s)	289, 502, 1010, 1663, 1684, 1696
NlaIII	CATG	8 cut(s)	488, 509, 529, 577, 887, 1273, 1412, 1517
NlaIV	GGNNCC	2 cut(s)	271, 1581
NmuCI	GTSAC	4 cut(s)	797, 862, 967, 1715
NsiI	ATGCAT	1 cut(s)	490
NspI	RCATGY	1 cut(s)	1273
OliI	CACNNNNGTG	1 cut(s)	1178
PaeI	GCATGC	1 cut(s)	1273
PaeR7I	CTCGAG	1 cut(s)	1026
PceI	AGGCCT	1 cut(s)	1442
PdmI	GAANNNNTTC	1 cut(s)	1307
PfeI	GAWTC	3 cut(s)	64, 218, 1510
PflMI	CCANNNNNTGG	1 cut(s)	490
PkrI	GCNGC	7 cut(s)	743, 814, 1641, 1809, 1866, 1930, 1952
PleI	GAGTC	5 cut(s)	261, 320, 759, 930, 1898
PmaCI	CACGTG	1 cut(s)	1655
PmlI	CACGTG	1 cut(s)	1655
PpsI	GAGTC	5 cut(s)	261, 320, 759, 930, 1898
Ppu21I	YACGTR	3 cut(s)	657, 1379, 1655
PpuMI	RGGWCCY	1 cut(s)	270
PshAI	GACNNNNGTC	1 cut(s)	1889
PsiI	TTATAA	3 cut(s)	555, 870, 1611
Psp124BI	GAGCTC	1 cut(s)	1027
Psp5II	RGGWCCY	1 cut(s)	270
Psp6I	CCWGG	2 cut(s)	897, 1314
PspCI	CACGTG	1 cut(s)	1655
PspGI	CCWGG	2 cut(s)	897, 1314
PspN4I	GGNNCC	2 cut(s)	271, 1581
PspPI	GGNCC	3 cut(s)	188, 270, 805
PspPPI	RGGWCCY	1 cut(s)	270
PspXI	VCTCGAGB	1 cut(s)	1026
RsaI	GTAC	5 cut(s)	206, 465, 664, 1645, 1896
RsaNI	GTAC	5 cut(s)	205, 464, 663, 1644, 1895
RseI	CAYNNNNRTG	2 cut(s)	338, 1178
SacI	GAGCTC	1 cut(s)	1027
SatI	GCNGC	7 cut(s)	742, 813, 1640, 1808, 1865, 1929, 1951
Sau3AI	GATC	6 cut(s)	289, 502, 1010, 1663, 1684, 1696
Sau96I	GGNCC	3 cut(s)	188, 270, 805
SchI	GAGTC	5 cut(s)	262, 321, 760, 931, 1899
ScrFI	CCNGG	2 cut(s)	899, 1316
SduI	GDGCHC	5 cut(s)	159, 643, 960, 1027, 1192
SfaNI	GCATC	4 cut(s)	717, 769, 1452, 1836
SfcI	CTRYAG	1 cut(s)	381
Sfr274I	CTCGAG	1 cut(s)	1026
SinI	GGWCC	2 cut(s)	188, 270
SlaI	CTCGAG	1 cut(s)	1026
SmiMI	CAYNNNNRTG	2 cut(s)	338, 1178
SmlI	CTYRAG	4 cut(s)	59, 839, 1026, 1758
SmoI	CTYRAG	4 cut(s)	59, 839, 1026, 1758
SnaBI	TACGTA	2 cut(s)	657, 1379
SphI	GCATGC	1 cut(s)	1273
SseBI	AGGCCT	1 cut(s)	1442
SsiI	CCGC	3 cut(s)	812, 1807, 1865
SspI	AATATT	1 cut(s)	532
SspMI	CTAG	1 cut(s)	1787
SstI	GAGCTC	1 cut(s)	1027
StuI	AGGCCT	1 cut(s)	1442
StyD4I	CCNGG	2 cut(s)	897, 1314
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	4 cut(s)	430, 1177, 1397, 1676
TaiI	ACGT	5 cut(s)	651, 659, 771, 1381, 1657
TaqI	TCGA	5 cut(s)	292, 606, 1027, 1749, 1839
TatI	WGTACW	2 cut(s)	463, 662
TauI	GCSGC	3 cut(s)	815, 1810, 1867
TfiI	GAWTC	3 cut(s)	64, 218, 1510
TscAI	CASTG	4 cut(s)	422, 789, 924, 1402
TseFI	GTSAC	4 cut(s)	797, 862, 967, 1715
TseI	GCWGC	4 cut(s)	741, 1639, 1928, 1950
Tsp45I	GTSAC	4 cut(s)	797, 862, 967, 1715
TspRI	CASTG	4 cut(s)	422, 789, 924, 1402
Van91I	CCANNNNNTGG	1 cut(s)	490
Vha464I	CTTAAG	1 cut(s)	839
VpaK11BI	GGWCC	2 cut(s)	188, 270
XapI	RAATTY	1 cut(s)	410
XceI	RCATGY	1 cut(s)	1273
XhoI	CTCGAG	1 cut(s)	1026
XmiI	GTMKAC	1 cut(s)	384
XmnI	GAANNNNTTC	1 cut(s)	1307
XspI	CTAG	1 cut(s)	1787
Zsp2I	ATGCAT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.