Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006720

Physical Location & Seq

Genomic Coordinates Reverse (-)

5674955 .. 5677502

Gene Structure 2548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0065700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGAGCTTAAAAGATCGTTGTTGGGTTTGGAATTCAGCCACTCAGCAACCCAGATCAAGATAAAAAAAAAGCAAAAGAAGAATCCAAGAGAGGGAGGGGAAGATCTCGCCGAGAATAGACCGGAATCGAACATCTCGCCGAGAATAGACCGGTTGGAAGTGGACGATAGTAAGTTGTATACTTTGGGTGCTCTGCAAATCTCTGGACTAATGGCTTTTCTTTCCGCATTCTCATCGGCAGCTACACACAGCGTAAGTTTCAACTTTACATCTTCCAATCTTATACATAGTATTTATGGTTCTACCTTTTTCTTAGCAACTGGCTTTCATGTGATTATAGAAAATTTGATCTATGCATCTGGGTTTGTCAATCTTGAGGAGTTTTGGCGTATGGTGAGACCAGCAGAAGGTGCAAGGACTGCTTTCAGTCTTGCTGGGACAATGACTGAGGATGAACGTGAGATGTGTGCAAGAACTATATACTGTACAGATATTGACAAGAAGAGGTTTGTCATTTCAATGGGAAATTTTAAGTTTTATGTTTTCCTTTCTCTCTGCTTTGGCATGGATGGTCATGTTGATGGAAATCTTCGGCTATGGGATATTCAGAAAGGAAAGCTGCTCAATGAAGTTTCTGCACACTCAAATACTGTTATGGCAATTCTAGCTATAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0140053 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

225

Amino Acids

25.23

Weight (kDa)

7.02

Isoelectric Point (pI)

30.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20090 AT4G20090
fragaria_vesca	FvH4_3g13070 FvH4_3g13070 FvH4_3g13070 FvH4_3g13070
malus_domestica	MD10G1226600.v1.1
prunus_persica	Prupe.4G118800_v2.0.a1
pyrus_communis	pycom05g22130 pycom05g22140 pycom10g19050
rosa_chinensis	RchiOBHm_Chr5g0021261
rosa_laevigata	RLG00000032600
rosa_multiflora	Rmu_sc0003392.1_g000013 Rmu_sc0004847.1_g000003
rosa_roxburghii	Rroxscaffold_1G00057240
rosa_rugosa	Rorug05G0065600 Rorug05G0065700 Rorug05G0065800 Rorug05G0065900 Rorug05G0065900
rosa_samantha	Rh5AG154600 Rh5BG154400 Rh5CG168000 Rh5DG154700
rosa_wichuraiana	Rw5G013780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	179
AciI	CCGC	1 cut(s)	225
AcsI	RAATTY	3 cut(s)	32, 343, 526
AfaI	GTAC	1 cut(s)	487
AfiI	CCNNNNNNNGG	2 cut(s)	92, 407
AgeI	ACCGGT	1 cut(s)	150
AgsI	TTSAA	2 cut(s)	262, 519
AluBI	AGCT	4 cut(s)	7, 242, 619, 668
AluI	AGCT	4 cut(s)	7, 242, 619, 668
Alw21I	GWGCWC	1 cut(s)	193
Alw26I	GTCTC	1 cut(s)	391
ApeKI	GCWGC	2 cut(s)	239, 619
ApoI	RAATTY	3 cut(s)	32, 343, 526
AsiGI	ACCGGT	1 cut(s)	150
AsuHPI	GGTGA	1 cut(s)	406
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	2 cut(s)	251, 606
BccI	CCATC	2 cut(s)	563, 575
BcgI	CGANNNNNNTGC	2 cut(s)	216, 250
BcoDI	GTCTC	1 cut(s)	391
BfaI	CTAG	1 cut(s)	665
BglII	AGATCT	1 cut(s)	103
BisI	GCNGC	2 cut(s)	240, 620
BlsI	GCNGC	2 cut(s)	241, 621
BmsI	GCATC	1 cut(s)	365
BpuEI	CTTGAG	1 cut(s)	395
BsaBI	GATNNNNATC	1 cut(s)	585
BsaI	GGTCTC	1 cut(s)	391
BsaWI	WCCGGW	2 cut(s)	121, 150
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 407
Bse118I	RCCGGY	1 cut(s)	150
Bse1I	ACTGG	1 cut(s)	325
Bse8I	GATNNNNATC	1 cut(s)	585
BseGI	GGATG	2 cut(s)	457, 574
BseJI	GATNNNNATC	1 cut(s)	585
BseLI	CCNNNNNNNGG	2 cut(s)	92, 407
BseMII	CTCAG	2 cut(s)	57, 438
BseNI	ACTGG	1 cut(s)	325
BseRI	GAGGAG	1 cut(s)	392
BseXI	GCAGC	2 cut(s)	251, 606
BseYI	CCCAGC	1 cut(s)	434
BsgI	GTGCAG	1 cut(s)	621
BshTI	ACCGGT	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	193
BsiSI	CCGG	2 cut(s)	122, 151
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	2 cut(s)	92, 407
BsmAI	GTCTC	1 cut(s)	391
BsmFI	GGGAC	1 cut(s)	451
BsmI	GAATGC	1 cut(s)	227
Bso31I	GGTCTC	1 cut(s)	391
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp1407I	TGTACA	1 cut(s)	485
Bsp143I	GATC	4 cut(s)	14, 54, 103, 348
BspACI	CCGC	1 cut(s)	225
BspCNI	CTCAG	2 cut(s)	56, 439
BspTNI	GGTCTC	1 cut(s)	391
BsrFI	RCCGGY	1 cut(s)	150
BsrGI	TGTACA	1 cut(s)	485
BsrI	ACTGG	1 cut(s)	325
BssAI	RCCGGY	1 cut(s)	150
BssMI	GATC	4 cut(s)	14, 54, 103, 348
BssNAI	GTATAC	1 cut(s)	180
Bst1107I	GTATAC	1 cut(s)	180
Bst4CI	ACNGT	2 cut(s)	485, 652
Bst6I	CTCTTC	1 cut(s)	497
BstAPI	GCANNNNNTGC	2 cut(s)	410, 419
BstAUI	TGTACA	1 cut(s)	485
BstDEI	CTNAG	3 cut(s)	43, 313, 447
BstF5I	GGATG	2 cut(s)	457, 574
BstKTI	GATC	4 cut(s)	17, 57, 106, 351
BstMAI	GTCTC	1 cut(s)	391
BstMBI	GATC	4 cut(s)	14, 54, 103, 348
BstMWI	GCNNNNNNNGC	3 cut(s)	410, 419, 665
BstV1I	GCAGC	2 cut(s)	251, 606
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BstZ17I	GTATAC	1 cut(s)	180
BtsCI	GGATG	2 cut(s)	457, 574
Cfr10I	RCCGGY	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	486
CspAI	ACCGGT	1 cut(s)	150
CviAII	CATG	3 cut(s)	329, 565, 575
CviJI	RGCY	8 cut(s)	7, 39, 215, 242, 324, 595, 619, 668
CviKI_1	RGCY	8 cut(s)	7, 39, 215, 242, 324, 595, 619, 668
CviQI	GTAC	1 cut(s)	486
DdeI	CTNAG	3 cut(s)	43, 313, 447
DpnI	GATC	4 cut(s)	16, 56, 105, 350
DpnII	GATC	4 cut(s)	14, 54, 103, 348
Eam1104I	CTCTTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	497
Eco31I	GGTCTC	1 cut(s)	391
EcoRI	GAATTC	1 cut(s)	32
EcoT22I	ATGCAT	1 cut(s)	358
FaeI	CATG	3 cut(s)	332, 568, 578
FalI	AAGNNNNNCTT	2 cut(s)	406, 438
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	3 cut(s)	328, 564, 574
FblI	GTMKAC	1 cut(s)	179
Fnu4HI	GCNGC	2 cut(s)	240, 620
FokI	GGATG	2 cut(s)	464, 581
Fsp4HI	GCNGC	2 cut(s)	240, 620
FspBI	CTAG	1 cut(s)	665
GluI	GCNGC	2 cut(s)	240, 620
GsaI	CCCAGC	1 cut(s)	438
HapII	CCGG	2 cut(s)	122, 151
Hin1II	CATG	3 cut(s)	332, 568, 578
HinfI	GANTC	2 cut(s)	82, 125
HpaII	CCGG	2 cut(s)	122, 151
HphI	GGTGA	1 cut(s)	406
Hpy166II	GTNNAC	2 cut(s)	163, 180
Hpy188I	TCNGA	1 cut(s)	609
Hpy188III	TCNNGA	3 cut(s)	58, 204, 374
Hpy8I	GTNNAC	2 cut(s)	163, 180
HpyAV	CCTTC	1 cut(s)	401
HpyCH4III	ACNGT	2 cut(s)	485, 652
HpyCH4IV	ACGT	1 cut(s)	457
HpyCH4V	TGCA	5 cut(s)	196, 356, 413, 470, 638
HpyF10VI	GCNNNNNNNGC	3 cut(s)	410, 419, 665
HpyF3I	CTNAG	3 cut(s)	43, 313, 447
HpySE526I	ACGT	1 cut(s)	457
Hsp92II	CATG	3 cut(s)	332, 568, 578
Kzo9I	GATC	4 cut(s)	14, 54, 103, 348
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	8 cut(s)	65, 135, 164, 189, 306, 345, 414, 420
Lsp1109I	GCAGC	2 cut(s)	251, 606
LweI	GCATC	1 cut(s)	365
MaeI	CTAG	1 cut(s)	665
MaeII	ACGT	1 cut(s)	457
MalI	GATC	4 cut(s)	16, 56, 105, 350
MboI	GATC	4 cut(s)	14, 54, 103, 348
MboII	GAAGA	5 cut(s)	91, 113, 264, 514, 581
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	4 cut(s)	32, 343, 526, 660
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	5 cut(s)	85, 89, 370, 442, 498
Mph1103I	ATGCAT	1 cut(s)	358
MseI	TTAA	2 cut(s)	9, 531
MslI	CAYNNNNRTG	2 cut(s)	518, 579
MspI	CCGG	2 cut(s)	122, 151
Mva1269I	GAATGC	1 cut(s)	227
MwoI	GCNNNNNNNGC	3 cut(s)	410, 419, 665
NdeII	GATC	4 cut(s)	14, 54, 103, 348
NlaIII	CATG	3 cut(s)	332, 568, 578
NmeAIII	GCCGAG	2 cut(s)	136, 165
NsiI	ATGCAT	1 cut(s)	358
PctI	GAATGC	1 cut(s)	227
PfeI	GAWTC	2 cut(s)	82, 125
PinAI	ACCGGT	1 cut(s)	150
PkrI	GCNGC	2 cut(s)	241, 621
PspFI	CCCAGC	1 cut(s)	434
PsrI	GAACNNNNNNTAC	2 cut(s)	283, 315
PsuI	RGATCY	1 cut(s)	103
RsaI	GTAC	1 cut(s)	487
RsaNI	GTAC	1 cut(s)	486
RseI	CAYNNNNRTG	2 cut(s)	518, 579
SaqAI	TTAA	2 cut(s)	9, 531
SatI	GCNGC	2 cut(s)	240, 620
Sau3AI	GATC	4 cut(s)	14, 54, 103, 348
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	8 cut(s)	9, 244, 308, 412, 460, 509, 621, 670
SfaNI	GCATC	1 cut(s)	365
SmiMI	CAYNNNNRTG	2 cut(s)	518, 579
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	4 cut(s)	32, 343, 526, 660
SsiI	CCGC	1 cut(s)	225
SspMI	CTAG	1 cut(s)	665
TaaI	ACNGT	2 cut(s)	485, 652
TaiI	ACGT	1 cut(s)	460
TaqI	TCGA	1 cut(s)	128
TasI	AATT	4 cut(s)	32, 343, 526, 660
TatI	WGTACW	1 cut(s)	485
TfiI	GAWTC	2 cut(s)	82, 125
Tru1I	TTAA	2 cut(s)	9, 531
Tru9I	TTAA	2 cut(s)	9, 531
TseI	GCWGC	2 cut(s)	239, 619
TspDTI	ATGAA	3 cut(s)	317, 468, 642
XapI	RAATTY	3 cut(s)	32, 343, 526
XmiI	GTMKAC	1 cut(s)	179
XspI	CTAG	1 cut(s)	665
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.