Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003392.1

Orthogroup ID

OG0006720

Physical Location & Seq

Genomic Coordinates Forward (+)

54457 .. 55701

Gene Structure 1245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003392.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

atgccaaaatgcccaactcactactcaaagctcctcacctcctcaatccaccaacgcctcaagaatcacaccctcttcccaattgacctttcatctccttcactccaatctcacctctcatctctttcagttccatcagacaatgacgaaccagagcccccaatttccgacgaaatcttcaggaaaggtccgaactttgggtcttataagtcaggtgattcaactttctattcactcattgagaactatgcgagtctgggggattttgggtccttggaaaaagttctggatcaaatgaaacgcgaaaggagagtctttattgagaggagtttcattgctgtgtttagagcttttgggaaagcacatttgcccaataaagctgtagacttgtttcatagaatggtagatgagtttcagtgtaggaggactgttaagtcgtttaattcggttctcaatgttattgtacaggagggtcattatgcccatgcattggagttttatgatcatgttgttggtgatagaaacatgattattttgccgaatgtgcttagttataatttgattattaaggcaatgtgtaggtttggattggttgataaggctgtcgagaagtttagggaaatgccggtcagggattgtgctcctgatgtgtttacgtattgtacattgatggatgggttgtgcaaggtgaataggattgacgaggctgtgtttttgttggatgagatgcagattgagggctgctctccgagtcctgcaacgttcaacgcgtttattgatgcagtgtgcaagaatggtgacttgggccatgcggcgaagcttgttgataatatgtttcttaaggggtgtgttcccaatgaagtgacttgtaacacacttatacatggtttgtgtctgccggggaagttgcagaaggcaatgagtcttttggatagaatggttttgaataaatgtgtgcccaatgatgtcacctacggcacaatcatcaatggacttgttaagcaaggacgatctcttgatggagctcgagtgttgatatctatggaagaaagagggcgtcgtgcaaatgagtatatttattcagttcttgttagtggattgttcaaggagggaaaatctgaagaggcaatgaaattgtggaaggagatgatggaaaagggatgtaaacccaacaccgtggtgtatagtgctcttatagaaattacacttcatttttcaccccaagttgttgctaagctgccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0140053 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

414

Amino Acids

46.55

Weight (kDa)

7.54

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20090 AT4G20090
fragaria_vesca	FvH4_3g13070 FvH4_3g13070 FvH4_3g13070 FvH4_3g13070
malus_domestica	MD10G1226600.v1.1
prunus_persica	Prupe.4G118800_v2.0.a1
pyrus_communis	pycom05g22130 pycom05g22140 pycom10g19050
rosa_chinensis	RchiOBHm_Chr5g0021261
rosa_laevigata	RLG00000032600
rosa_multiflora	Rmu_sc0003392.1_g000013 Rmu_sc0004847.1_g000003
rosa_roxburghii	Rroxscaffold_1G00057240
rosa_rugosa	Rorug05G0065600 Rorug05G0065700 Rorug05G0065800 Rorug05G0065900 Rorug05G0065900
rosa_samantha	Rh5AG154600 Rh5BG154400 Rh5CG168000 Rh5DG154700
rosa_wichuraiana	Rw5G013780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	207, 555
AasI	GACNNNNNNGTC	1 cut(s)	433
AccB7I	CCANNNNNTGG	1 cut(s)	490
AccI	GTMKAC	1 cut(s)	384
AccII	CGCG	2 cut(s)	303, 770
AciI	CCGC	1 cut(s)	812
AclI	AACGTT	1 cut(s)	761
AclWI	GGATC	1 cut(s)	297
AcuI	CTGAAG	2 cut(s)	163, 1140
AcyI	GRCGYC	1 cut(s)	1057
AfaI	GTAC	2 cut(s)	465, 664
AfiI	CCNNNNNNNGG	2 cut(s)	197, 490
AflII	CTTAAG	1 cut(s)	839
AflIII	ACRYGT	1 cut(s)	768
AgsI	TTSAA	4 cut(s)	222, 766, 946, 1105
AjuI	GAANNNNNNNTTGG	4 cut(s)	73, 105, 785, 817
AleI	CACNNNNGTG	1 cut(s)	1178
AluBI	AGCT	6 cut(s)	31, 350, 380, 820, 1025, 1237
AluI	AGCT	6 cut(s)	31, 350, 380, 820, 1025, 1237
Alw21I	GWGCWC	3 cut(s)	643, 1027, 1192
AlwI	GGATC	1 cut(s)	297
Ama87I	CYCGRG	1 cut(s)	1026
AoxI	GGCC	1 cut(s)	805
ApeKI	GCWGC	2 cut(s)	741, 1237
ArsI	GACNNNNNNTTYG	4 cut(s)	185, 217, 297, 329
Asp700I	GAANNNNTTC	1 cut(s)	282
AspS9I	GGNCC	3 cut(s)	188, 270, 805
AsuC2I	CCSGG	1 cut(s)	900
AsuHPI	GGTGA	8 cut(s)	28, 104, 227, 527, 700, 809, 961, 1209
AvaI	CYCGRG	1 cut(s)	1026
AvaII	GGWCC	2 cut(s)	188, 270
BaeGI	GKGCMC	1 cut(s)	960
BanII	GRGCYC	2 cut(s)	159, 1027
Bbv12I	GWGCWC	3 cut(s)	643, 1027, 1192
BbvI	GCAGC	2 cut(s)	728, 1224
BccI	CCATC	5 cut(s)	142, 664, 668, 1013, 1144
BceAI	ACGGC	1 cut(s)	991
BclI	TGATCA	1 cut(s)	502
BcnI	CCSGG	1 cut(s)	900
BfmI	CTRYAG	1 cut(s)	381
BfrI	CTTAAG	1 cut(s)	839
BisI	GCNGC	3 cut(s)	742, 813, 1238
BlpI	GCTNAGC	1 cut(s)	1233
BlsI	GCNGC	3 cut(s)	743, 814, 1239
Bme1390I	CCNGG	1 cut(s)	900
Bme18I	GGWCC	2 cut(s)	188, 270
BmeT110I	CYCGRG	1 cut(s)	1026
BmgT120I	GGNCC	3 cut(s)	188, 270, 805
BmiI	GGNNCC	1 cut(s)	271
BmrFI	CCNGG	1 cut(s)	900
BmsI	GCATC	2 cut(s)	717, 769
BplI	GAGNNNNNCTC	2 cut(s)	728, 760
Bpu1102I	GCTNAGC	1 cut(s)	1233
BpuEI	CTTGAG	1 cut(s)	44
BpuMI	CCSGG	1 cut(s)	900
BsaAI	YACGTR	1 cut(s)	657
BsaHI	GRCGYC	1 cut(s)	1057
BsaJI	CCNNGG	3 cut(s)	273, 899, 1176
BsaXI	ACNNNNNCTCC	2 cut(s)	1014, 1044
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 490
Bse118I	RCCGGY	1 cut(s)	625
Bse3DI	GCAATG	4 cut(s)	333, 579, 924, 1134
BseDI	CCNNGG	3 cut(s)	273, 899, 1176
BseGI	GGATG	3 cut(s)	679, 727, 1166
BseLI	CCNNNNNNNGG	2 cut(s)	197, 490
BseMI	GCAATG	4 cut(s)	333, 579, 924, 1134
BseRI	GAGGAG	3 cut(s)	23, 31, 340
BseSI	GKGCMC	1 cut(s)	960
BseXI	GCAGC	2 cut(s)	728, 1224
Bsh1236I	CGCG	2 cut(s)	303, 770
BshFI	GGCC	1 cut(s)	807
BsiHKAI	GWGCWC	3 cut(s)	643, 1027, 1192
BsiHKCI	CYCGRG	1 cut(s)	1026
BsiSI	CCGG	2 cut(s)	626, 899
BslI	CCNNNNNNNGG	2 cut(s)	197, 490
BsnI	GGCC	1 cut(s)	807
BsoBI	CYCGRG	1 cut(s)	1026
Bsp1286I	GDGCHC	5 cut(s)	159, 643, 960, 1027, 1192
Bsp1407I	TGTACA	2 cut(s)	463, 662
Bsp143I	GATC	3 cut(s)	289, 502, 1010
Bsp1720I	GCTNAGC	1 cut(s)	1233
BspACI	CCGC	1 cut(s)	812
BspANI	GGCC	1 cut(s)	807
BspFNI	CGCG	2 cut(s)	303, 770
BspLI	GGNNCC	1 cut(s)	271
BspPI	GGATC	1 cut(s)	297
BspTI	CTTAAG	1 cut(s)	839
BsrDI	GCAATG	4 cut(s)	333, 579, 924, 1134
BsrFI	RCCGGY	1 cut(s)	625
BsrGI	TGTACA	2 cut(s)	463, 662
BssAI	RCCGGY	1 cut(s)	625
BssECI	CCNNGG	3 cut(s)	273, 899, 1176
BssMI	GATC	3 cut(s)	289, 502, 1010
BssNI	GRCGYC	1 cut(s)	1057
BssT1I	CCWWGG	1 cut(s)	273
Bst4CI	ACNGT	2 cut(s)	430, 1177
Bst6I	CTCTTC	2 cut(s)	80, 1116
BstACI	GRCGYC	1 cut(s)	1057
BstAFI	CTTAAG	1 cut(s)	839
BstAUI	TGTACA	2 cut(s)	463, 662
BstBAI	YACGTR	1 cut(s)	657
BstDEI	CTNAG	2 cut(s)	548, 1233
BstDSI	CCRYGG	1 cut(s)	1176
BstF5I	GGATG	3 cut(s)	679, 727, 1166
BstFNI	CGCG	2 cut(s)	303, 770
BstKTI	GATC	3 cut(s)	292, 505, 1013
BstMBI	GATC	3 cut(s)	289, 502, 1010
BstMWI	GCNNNNNNNGC	1 cut(s)	544
BstSCI	CCNGG	1 cut(s)	898
BstSFI	CTRYAG	1 cut(s)	381
BstSLI	GKGCMC	1 cut(s)	960
BstSNI	TACGTA	1 cut(s)	657
BstUI	CGCG	2 cut(s)	303, 770
BstV1I	GCAGC	2 cut(s)	728, 1224
BstXI	CCANNNNNNTGG	1 cut(s)	1177
BsuRI	GGCC	1 cut(s)	807
BtgI	CCRYGG	1 cut(s)	1176
BtsCI	GGATG	3 cut(s)	679, 727, 1166
BtsI	GCAGTG	1 cut(s)	789
BtsIMutI	CAGTG	2 cut(s)	422, 789
Cfr10I	RCCGGY	1 cut(s)	625
Cfr13I	GGNCC	3 cut(s)	188, 270, 805
CseI	GACGC	1 cut(s)	1046
Csp6I	GTAC	2 cut(s)	464, 663
CviAII	CATG	5 cut(s)	485, 506, 526, 809, 884
CviQI	GTAC	2 cut(s)	464, 663
DdeI	CTNAG	2 cut(s)	548, 1233
DpnI	GATC	3 cut(s)	291, 504, 1012
DpnII	GATC	3 cut(s)	289, 502, 1010
DrdI	GACNNNNNNGTC	1 cut(s)	433
DseDI	GACNNNNNNGTC	1 cut(s)	433
Eam1104I	CTCTTC	2 cut(s)	80, 1116
EarI	CTCTTC	2 cut(s)	80, 1116
Ecl136II	GAGCTC	1 cut(s)	1025
Eco105I	TACGTA	1 cut(s)	657
Eco130I	CCWWGG	1 cut(s)	273
Eco24I	GRGCYC	2 cut(s)	159, 1027
Eco32I	GATATC	1 cut(s)	1038
Eco47I	GGWCC	2 cut(s)	188, 270
Eco53kI	GAGCTC	1 cut(s)	1025
Eco57I	CTGAAG	2 cut(s)	163, 1140
Eco88I	CYCGRG	1 cut(s)	1026
EcoICRI	GAGCTC	1 cut(s)	1025
EcoO109I	RGGNCCY	1 cut(s)	270
EcoRV	GATATC	1 cut(s)	1038
EcoT14I	CCWWGG	1 cut(s)	273
EcoT22I	ATGCAT	1 cut(s)	490
EcoT38I	GRGCYC	2 cut(s)	159, 1027
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	5 cut(s)	488, 509, 529, 812, 887
FatI	CATG	5 cut(s)	484, 505, 525, 808, 883
FbaI	TGATCA	1 cut(s)	502
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	3 cut(s)	742, 813, 1238
FokI	GGATG	3 cut(s)	686, 734, 1173
FriOI	GRGCYC	2 cut(s)	159, 1027
Fsp4HI	GCNGC	3 cut(s)	742, 813, 1238
GluI	GCNGC	3 cut(s)	742, 813, 1238
HaeIII	GGCC	1 cut(s)	807
HapII	CCGG	2 cut(s)	626, 899
HgaI	GACGC	1 cut(s)	1046
Hin1I	GRCGYC	1 cut(s)	1057
Hin1II	CATG	5 cut(s)	488, 509, 529, 812, 887
HindIII	AAGCTT	1 cut(s)	818
HinfI	GANTC	6 cut(s)	64, 218, 253, 312, 751, 922
HpaII	CCGG	2 cut(s)	626, 899
HphI	GGTGA	8 cut(s)	28, 104, 227, 527, 700, 809, 961, 1209
Hpy166II	GTNNAC	3 cut(s)	385, 654, 1166
Hpy188I	TCNGA	5 cut(s)	139, 169, 192, 750, 1120
Hpy188III	TCNNGA	6 cut(s)	61, 181, 287, 607, 644, 1016
Hpy8I	GTNNAC	3 cut(s)	385, 654, 1166
Hpy99I	CGWCG	2 cut(s)	173, 1062
HpyAV	CCTTC	3 cut(s)	108, 907, 1135
HpyCH4III	ACNGT	2 cut(s)	430, 1177
HpyCH4IV	ACGT	2 cut(s)	656, 761
HpyCH4V	TGCA	8 cut(s)	488, 684, 730, 758, 782, 789, 910, 1064
HpyF10VI	GCNNNNNNNGC	1 cut(s)	544
HpyF3I	CTNAG	2 cut(s)	548, 1233
HpySE526I	ACGT	2 cut(s)	656, 761
Hsp92I	GRCGYC	1 cut(s)	1057
Hsp92II	CATG	5 cut(s)	488, 509, 529, 812, 887
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	3 cut(s)	289, 502, 1010
LmnI	GCTCC	3 cut(s)	36, 646, 1022
Lsp1109I	GCAGC	2 cut(s)	728, 1224
LweI	GCATC	2 cut(s)	717, 769
MaeII	ACGT	2 cut(s)	656, 761
MaeIII	GTNAC	4 cut(s)	797, 862, 869, 967
MalI	GATC	3 cut(s)	291, 504, 1012
MboI	GATC	3 cut(s)	289, 502, 1010
MboII	GAAGA	4 cut(s)	67, 169, 1058, 1133
MfeI	CAATTG	1 cut(s)	81
MhlI	GDGCHC	5 cut(s)	159, 643, 960, 1027, 1192
MluCI	AATT	6 cut(s)	81, 162, 442, 556, 1133, 1200
MluI	ACGCGT	1 cut(s)	768
MlyI	GAGTC	4 cut(s)	262, 321, 760, 931
MmeI	TCCRAC	2 cut(s)	192, 699
Mph1103I	ATGCAT	1 cut(s)	490
MroXI	GAANNNNTTC	1 cut(s)	282
MseI	TTAA	5 cut(s)	432, 441, 567, 840, 999
MslI	CAYNNNNRTG	2 cut(s)	338, 1178
MspCI	CTTAAG	1 cut(s)	839
MspI	CCGG	2 cut(s)	626, 899
MspR9I	CCNGG	1 cut(s)	900
MunI	CAATTG	1 cut(s)	81
MvnI	CGCG	2 cut(s)	303, 770
MwoI	GCNNNNNNNGC	1 cut(s)	544
NciI	CCSGG	1 cut(s)	900
NdeII	GATC	3 cut(s)	289, 502, 1010
NlaIII	CATG	5 cut(s)	488, 509, 529, 812, 887
NlaIV	GGNNCC	1 cut(s)	271
NmuCI	GTSAC	3 cut(s)	797, 862, 967
NsiI	ATGCAT	1 cut(s)	490
OliI	CACNNNNGTG	1 cut(s)	1178
PaeR7I	CTCGAG	1 cut(s)	1026
PcsI	WCGNNNNNNNCGW	1 cut(s)	767
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	64, 218
PflMI	CCANNNNNTGG	1 cut(s)	490
PkrI	GCNGC	3 cut(s)	743, 814, 1239
PleI	GAGTC	4 cut(s)	261, 320, 759, 930
PpsI	GAGTC	4 cut(s)	261, 320, 759, 930
Ppu21I	YACGTR	1 cut(s)	657
PpuMI	RGGWCCY	1 cut(s)	270
PsiI	TTATAA	2 cut(s)	207, 555
Psp124BI	GAGCTC	1 cut(s)	1027
Psp1406I	AACGTT	1 cut(s)	761
Psp5II	RGGWCCY	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	271
PspPI	GGNCC	3 cut(s)	188, 270, 805
PspPPI	RGGWCCY	1 cut(s)	270
PspXI	VCTCGAGB	1 cut(s)	1026
RsaI	GTAC	2 cut(s)	465, 664
RsaNI	GTAC	2 cut(s)	464, 663
RseI	CAYNNNNRTG	2 cut(s)	338, 1178
SacI	GAGCTC	1 cut(s)	1027
SaqAI	TTAA	5 cut(s)	432, 441, 567, 840, 999
SatI	GCNGC	3 cut(s)	742, 813, 1238
Sau3AI	GATC	3 cut(s)	289, 502, 1010
Sau96I	GGNCC	3 cut(s)	188, 270, 805
SchI	GAGTC	4 cut(s)	262, 321, 760, 931
ScrFI	CCNGG	1 cut(s)	900
SduI	GDGCHC	5 cut(s)	159, 643, 960, 1027, 1192
SfaNI	GCATC	2 cut(s)	717, 769
SfcI	CTRYAG	1 cut(s)	381
Sfr274I	CTCGAG	1 cut(s)	1026
SinI	GGWCC	2 cut(s)	188, 270
SlaI	CTCGAG	1 cut(s)	1026
SmiMI	CAYNNNNRTG	2 cut(s)	338, 1178
SmlI	CTYRAG	3 cut(s)	59, 839, 1026
SmoI	CTYRAG	3 cut(s)	59, 839, 1026
SnaBI	TACGTA	1 cut(s)	657
Sse9I	AATT	6 cut(s)	81, 162, 442, 556, 1133, 1200
SsiI	CCGC	1 cut(s)	812
SstI	GAGCTC	1 cut(s)	1027
StyD4I	CCNGG	1 cut(s)	898
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	2 cut(s)	430, 1177
TaiI	ACGT	2 cut(s)	659, 764
TaqI	TCGA	2 cut(s)	606, 1027
TasI	AATT	6 cut(s)	81, 162, 442, 556, 1133, 1200
TatI	WGTACW	2 cut(s)	463, 662
TauI	GCSGC	1 cut(s)	815
TfiI	GAWTC	2 cut(s)	64, 218
Tru1I	TTAA	5 cut(s)	432, 441, 567, 840, 999
Tru9I	TTAA	5 cut(s)	432, 441, 567, 840, 999
TscAI	CASTG	2 cut(s)	422, 789
TseFI	GTSAC	3 cut(s)	797, 862, 967
TseI	GCWGC	2 cut(s)	741, 1237
Tsp45I	GTSAC	3 cut(s)	797, 862, 967
TspDTI	ATGAA	7 cut(s)	81, 311, 322, 383, 873, 1145, 1199
TspRI	CASTG	2 cut(s)	422, 789
Van91I	CCANNNNNTGG	1 cut(s)	490
Vha464I	CTTAAG	1 cut(s)	839
VpaK11BI	GGWCC	2 cut(s)	188, 270
XhoI	CTCGAG	1 cut(s)	1026
XmiI	GTMKAC	1 cut(s)	384
XmnI	GAANNNNTTC	1 cut(s)	282
Zsp2I	ATGCAT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.