Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006720

Physical Location & Seq

Genomic Coordinates Forward (+)

24617452 .. 24618415

Gene Structure 964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g22130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGAGAAAAATTGAAAACGAACTGCTTGTAAAAACCGGCGTCTTCTTCCAACCAACCAGAACTTCTTCATCTTACCTTCCTTCTTTCTGCTGCTCTGGTTTAAAGGACCGTGATATTCTGAGTTCGAAACCACTCAGCGAGTTCACTCGGAGAGTTCGTCTCTCTCTGAAACGCCAAAAACCCTTGGAGTTTTATGCAGGTTTCTATCCAAAACGCAGAAGAAACCCTTCTAATCCCATGCCAAAATGCTCAACCTACCACTCGAAGCTCCTCGGCAGCTCAATCCCACATGGCGTTCAGAAGCTGGGTCTCTATCCAATCCCGCCATGTGAGTTGTTAACTTCTTCACTTCTCTCTCACTTTTCAGTTCTTGCAATTCCATCGAACCAAGCCCTCGAAGCTGAACCTGTAAATAATGATGAAGCCCAGCCACCAATTTCTGATGAAATGTTCAGGAAAGGTGCCAAATTGGGTTCTTACAGATCGGGTGATTCCACATTCTATTCACTCATTGAGAATTACGCGAATTCGGACGATTTTAGGTCCCTGGAGCAGGTTTTGGATCGAATGAAGCGCGAAAGGCGGGTTTTTATTGAGAAGAGTTTTATTCTGATGTTTAGAGCTTATGGAAAAGCGCATTTACCCAATAAAGCTGTAGAATTGTTCTATAGAATGGTGGATGAATTTCGGTGTAGACGAACTGTTAAGTCATTTAATTCGGTTCTTAATGTTATTATACAGGAGGGTCATTATTCTCATGCTTTAGAATTTTATTCCCGTGTTGTTGGTACTACAAACGTAAACATTTCGCCCAATGTACTGAGTTATAATTTGATCGATCAAGGCCATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0140053 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

285

Amino Acids

32.56

Weight (kDa)

9.56

Isoelectric Point (pI)

53.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20090 AT4G20090
fragaria_vesca	FvH4_3g13070 FvH4_3g13070 FvH4_3g13070 FvH4_3g13070
malus_domestica	MD10G1226600.v1.1
prunus_persica	Prupe.4G118800_v2.0.a1
pyrus_communis	pycom05g22130 pycom05g22140 pycom10g19050
rosa_chinensis	RchiOBHm_Chr5g0021261
rosa_laevigata	RLG00000032600
rosa_multiflora	Rmu_sc0003392.1_g000013 Rmu_sc0004847.1_g000003
rosa_roxburghii	Rroxscaffold_1G00057240
rosa_rugosa	Rorug05G0065600 Rorug05G0065700 Rorug05G0065800 Rorug05G0065900 Rorug05G0065900
rosa_samantha	Rh5AG154600 Rh5BG154400 Rh5CG168000 Rh5DG154700
rosa_wichuraiana	Rw5G013780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	828
Acc36I	ACCTGC	2 cut(s)	188, 544
AccB1I	GGYRCC	1 cut(s)	461
AccI	GTMKAC	1 cut(s)	694
AccII	CGCG	2 cut(s)	524, 576
AciI	CCGC	2 cut(s)	323, 583
AclWI	GGATC	1 cut(s)	570
AcsI	RAATTY	3 cut(s)	526, 683, 767
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	2 cut(s)	790, 819
AfiI	CCNNNNNNNGG	1 cut(s)	553
AgsI	TTSAA	1 cut(s)	14
AjnI	CCWGG	1 cut(s)	546
AjuI	GAANNNNNNNTTGG	2 cut(s)	46, 78
AluBI	AGCT	6 cut(s)	268, 279, 304, 401, 623, 653
AluI	AGCT	6 cut(s)	268, 279, 304, 401, 623, 653
Alw26I	GTCTC	2 cut(s)	164, 314
AlwI	GGATC	1 cut(s)	570
AlwNI	CAGNNNCTG	1 cut(s)	304
AoxI	GGCC	1 cut(s)	844
ApeKI	GCWGC	2 cut(s)	90, 276
ApoI	RAATTY	3 cut(s)	526, 683, 767
Asp700I	GAANNNNTTC	2 cut(s)	64, 226
AspLEI	GCGC	2 cut(s)	576, 637
AspS9I	GGNCC	2 cut(s)	106, 543
AsuHPI	GGTGA	1 cut(s)	500
AsuII	TTCGAA	1 cut(s)	125
AvaII	GGWCC	2 cut(s)	106, 543
BanI	GGYRCC	1 cut(s)	461
BbsI	GAAGAC	1 cut(s)	34
BbvI	GCAGC	2 cut(s)	77, 288
BccI	CCATC	1 cut(s)	388
BcgI	CGANNNNNNTGC	2 cut(s)	363, 397
BciT130I	CCWGG	1 cut(s)	548
BcoDI	GTCTC	2 cut(s)	164, 314
BfmI	CTRYAG	2 cut(s)	654, 667
BfuAI	ACCTGC	2 cut(s)	188, 544
BisI	GCNGC	2 cut(s)	91, 277
BlsI	GCNGC	2 cut(s)	92, 278
Bme1390I	CCNGG	1 cut(s)	548
Bme18I	GGWCC	2 cut(s)	106, 543
BmgT120I	GGNCC	2 cut(s)	106, 543
BmiI	GGNNCC	2 cut(s)	463, 545
BmrFI	CCNGG	1 cut(s)	548
BpiI	GAAGAC	1 cut(s)	34
BplI	GAGNNNNNCTC	2 cut(s)	144, 176
BpmI	CTGGAG	1 cut(s)	569
Bpu14I	TTCGAA	1 cut(s)	125
Bsa29I	ATCGAT	1 cut(s)	837
BsaHI	GRCGYC	1 cut(s)	39
BsaI	GGTCTC	1 cut(s)	314
BsaJI	CCNNGG	3 cut(s)	183, 271, 546
BsaXI	ACNNNNNCTCC	2 cut(s)	142, 172
Bsc4I	CCNNNNNNNGG	1 cut(s)	553
Bse118I	RCCGGY	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	548
BseCI	ATCGAT	1 cut(s)	837
BseDI	CCNNGG	3 cut(s)	183, 271, 546
BseGI	GGATG	1 cut(s)	685
BseLI	CCNNNNNNNGG	1 cut(s)	553
BseMII	CTCAG	3 cut(s)	110, 148, 812
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	2 cut(s)	77, 288
BseYI	CCCAGC	2 cut(s)	304, 426
Bsh1236I	CGCG	2 cut(s)	524, 576
BshFI	GGCC	1 cut(s)	846
BshNI	GGYRCC	1 cut(s)	461
BshVI	ATCGAT	1 cut(s)	837
BsiSI	CCGG	1 cut(s)	36
BslFI	GGGAC	1 cut(s)	529
BslI	CCNNNNNNNGG	1 cut(s)	553
BsmAI	GTCTC	2 cut(s)	164, 314
BsmBI	CGTCTC	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	529
BsnI	GGCC	1 cut(s)	846
Bso31I	GGTCTC	1 cut(s)	314
Bsp119I	TTCGAA	1 cut(s)	125
Bsp143I	GATC	4 cut(s)	482, 562, 834, 838
BspACI	CCGC	2 cut(s)	323, 583
BspANI	GGCC	1 cut(s)	846
BspCNI	CTCAG	3 cut(s)	111, 147, 813
BspDI	ATCGAT	1 cut(s)	837
BspFNI	CGCG	2 cut(s)	524, 576
BspLI	GGNNCC	2 cut(s)	463, 545
BspMI	ACCTGC	2 cut(s)	188, 544
BspPI	GGATC	1 cut(s)	570
BspT104I	TTCGAA	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	461
BspTNI	GGTCTC	1 cut(s)	314
BsrFI	RCCGGY	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	3 cut(s)	183, 271, 546
BssMI	GATC	4 cut(s)	482, 562, 834, 838
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	548
Bst4CI	ACNGT	2 cut(s)	110, 703
Bst6I	CTCTTC	1 cut(s)	593
BstACI	GRCGYC	1 cut(s)	39
BstBI	TTCGAA	1 cut(s)	125
BstDEI	CTNAG	3 cut(s)	119, 134, 821
BstENI	CCTNNNNNAGG	1 cut(s)	551
BstF5I	GGATG	1 cut(s)	685
BstFNI	CGCG	2 cut(s)	524, 576
BstHHI	GCGC	2 cut(s)	576, 637
BstKTI	GATC	4 cut(s)	485, 565, 837, 841
BstMAI	GTCTC	2 cut(s)	164, 314
BstMBI	GATC	4 cut(s)	482, 562, 834, 838
BstMWI	GCNNNNNNNGC	2 cut(s)	398, 580
BstNI	CCWGG	1 cut(s)	548
BstSCI	CCNGG	1 cut(s)	546
BstSFI	CTRYAG	2 cut(s)	654, 667
BstUI	CGCG	2 cut(s)	524, 576
BstV1I	GCAGC	2 cut(s)	77, 288
BstV2I	GAAGAC	1 cut(s)	34
Bsu15I	ATCGAT	1 cut(s)	837
BsuRI	GGCC	1 cut(s)	846
BsuTUI	ATCGAT	1 cut(s)	837
BtsCI	GGATG	1 cut(s)	685
BveI	ACCTGC	2 cut(s)	188, 544
CaiI	CAGNNNCTG	1 cut(s)	304
CfoI	GCGC	2 cut(s)	576, 637
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	2 cut(s)	106, 543
ClaI	ATCGAT	1 cut(s)	837
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	2 cut(s)	789, 818
CviAII	CATG	5 cut(s)	238, 290, 327, 758, 848
CviQI	GTAC	2 cut(s)	789, 818
DdeI	CTNAG	3 cut(s)	119, 134, 821
DpnI	GATC	4 cut(s)	484, 564, 836, 840
DpnII	GATC	4 cut(s)	482, 562, 834, 838
DraI	TTTAAA	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	593
EarI	CTCTTC	1 cut(s)	593
Eco130I	CCWWGG	1 cut(s)	183
Eco31I	GGTCTC	1 cut(s)	314
Eco47I	GGWCC	2 cut(s)	106, 543
EcoNI	CCTNNNNNAGG	1 cut(s)	551
EcoO109I	RGGNCCY	1 cut(s)	543
EcoRI	GAATTC	1 cut(s)	526
EcoRII	CCWGG	1 cut(s)	546
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
Esp3I	CGTCTC	1 cut(s)	164
FaeI	CATG	5 cut(s)	241, 293, 330, 761, 851
FalI	AAGNNNNNCTT	2 cut(s)	211, 243
FaqI	GGGAC	1 cut(s)	529
FatI	CATG	5 cut(s)	237, 289, 326, 757, 847
FauI	CCCGC	2 cut(s)	330, 576
FblI	GTMKAC	1 cut(s)	694
Fnu4HI	GCNGC	2 cut(s)	91, 277
FokI	GGATG	1 cut(s)	692
Fsp4HI	GCNGC	2 cut(s)	91, 277
GlaI	GCGC	2 cut(s)	575, 636
GluI	GCNGC	2 cut(s)	91, 277
GsaI	CCCAGC	2 cut(s)	308, 430
GsuI	CTGGAG	1 cut(s)	569
HaeIII	GGCC	1 cut(s)	846
HapII	CCGG	1 cut(s)	36
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	2 cut(s)	576, 637
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	5 cut(s)	241, 293, 330, 761, 851
Hin6I	GCGC	2 cut(s)	574, 635
HinP1I	GCGC	2 cut(s)	574, 635
HincII	GTYRAC	1 cut(s)	339
HindII	GTYRAC	1 cut(s)	339
HinfI	GANTC	1 cut(s)	491
HpaI	GTTAAC	1 cut(s)	339
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	4 cut(s)	144, 339, 695, 802
Hpy188I	TCNGA	7 cut(s)	120, 150, 168, 300, 442, 532, 612
Hpy188III	TCNNGA	1 cut(s)	454
Hpy8I	GTNNAC	4 cut(s)	144, 339, 695, 802
HpyAV	CCTTC	3 cut(s)	86, 90, 237
HpyCH4III	ACNGT	2 cut(s)	110, 703
HpyCH4IV	ACGT	1 cut(s)	798
HpyCH4V	TGCA	2 cut(s)	197, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	398, 580
HpyF3I	CTNAG	3 cut(s)	119, 134, 821
HpySE526I	ACGT	1 cut(s)	798
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	5 cut(s)	241, 293, 330, 761, 851
HspAI	GCGC	2 cut(s)	574, 635
KspAI	GTTAAC	1 cut(s)	339
Kzo9I	GATC	4 cut(s)	482, 562, 834, 838
LmnI	GCTCC	2 cut(s)	273, 550
Lsp1109I	GCAGC	2 cut(s)	77, 288
MaeII	ACGT	1 cut(s)	798
MalI	GATC	4 cut(s)	484, 564, 836, 840
MboI	GATC	4 cut(s)	482, 562, 834, 838
MboII	GAAGA	6 cut(s)	34, 37, 57, 231, 336, 610
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	3 cut(s)	281, 404, 736
MroXI	GAANNNNTTC	2 cut(s)	64, 226
MseI	TTAA	5 cut(s)	101, 338, 705, 714, 726
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	1 cut(s)	548
MvaI	CCWGG	1 cut(s)	548
MvnI	CGCG	2 cut(s)	524, 576
MwoI	GCNNNNNNNGC	2 cut(s)	398, 580
NdeII	GATC	4 cut(s)	482, 562, 834, 838
NlaIII	CATG	5 cut(s)	241, 293, 330, 761, 851
NlaIV	GGNNCC	2 cut(s)	463, 545
NmeAIII	GCCGAG	1 cut(s)	252
NspV	TTCGAA	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	2 cut(s)	154, 694
PdmI	GAANNNNTTC	2 cut(s)	64, 226
PfeI	GAWTC	1 cut(s)	491
PkrI	GCNGC	2 cut(s)	92, 278
PpuMI	RGGWCCY	1 cut(s)	543
PsiI	TTATAA	1 cut(s)	828
Psp5II	RGGWCCY	1 cut(s)	543
Psp6I	CCWGG	1 cut(s)	546
PspFI	CCCAGC	2 cut(s)	304, 426
PspGI	CCWGG	1 cut(s)	546
PspN4I	GGNNCC	2 cut(s)	463, 545
PspPI	GGNCC	2 cut(s)	106, 543
PspPPI	RGGWCCY	1 cut(s)	543
PstNI	CAGNNNCTG	1 cut(s)	304
RsaI	GTAC	2 cut(s)	790, 819
RsaNI	GTAC	2 cut(s)	789, 818
SaqAI	TTAA	5 cut(s)	101, 338, 705, 714, 726
SatI	GCNGC	2 cut(s)	91, 277
Sau3AI	GATC	4 cut(s)	482, 562, 834, 838
Sau96I	GGNCC	2 cut(s)	106, 543
ScrFI	CCNGG	1 cut(s)	548
SfcI	CTRYAG	2 cut(s)	654, 667
SfuI	TTCGAA	1 cut(s)	125
SinI	GGWCC	2 cut(s)	106, 543
SsiI	CCGC	2 cut(s)	323, 583
StyD4I	CCNGG	1 cut(s)	546
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	2 cut(s)	110, 703
TaiI	ACGT	1 cut(s)	801
TaqI	TCGA	6 cut(s)	125, 263, 383, 396, 565, 837
TatI	WGTACW	1 cut(s)	817
TfiI	GAWTC	1 cut(s)	491
Tru1I	TTAA	5 cut(s)	101, 338, 705, 714, 726
Tru9I	TTAA	5 cut(s)	101, 338, 705, 714, 726
TseI	GCWGC	2 cut(s)	90, 276
TspDTI	ATGAA	5 cut(s)	57, 435, 459, 584, 696
VpaK11BI	GGWCC	2 cut(s)	106, 543
XagI	CCTNNNNNAGG	1 cut(s)	551
XapI	RAATTY	3 cut(s)	526, 683, 767
XmiI	GTMKAC	1 cut(s)	694
XmnI	GAANNNNTTC	2 cut(s)	64, 226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.