Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006720

Physical Location & Seq

Genomic Coordinates Reverse (-)

5695699 .. 5697104

Gene Structure 1406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0065800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCCTCCTTCGCCGCTAGGTCCATGCTCCGCTCCGCCGCGGCCAGAACCACTCTGGGTTCTCGGGTCGCCTCCGCAGCCCGACCCAAACCCTCCGCCGCACCATTCACCATCCCCAAACAAAACAAAAACCCCATTTTCAGGTCGCCTGTGGAGTTGAGCTGCTGCGTGGAGACGTTGCTTCCCTACCACACGGCCACAGCCTCTGCATTGCTCACCTCGATGCTCTCCGTCTCGCAACGCTCCTACGGTTGGACCCCTGAAGTGAGTTTCATTTACTTGCGGCGTGCTCAATCTCGTTTCGTTTTGTGTACATTACAAGTTCTGCCGATCTTGGAAGTTGGAGTCGATGAGGTCATGATCAAGAGTATATTTACTTTTGTGCTCCAAACTGAAATGGGGGGGGTGATGTTAGATGATGATGGCTGGAAGTGTGGCCAAGACATTAAATGTGGCAAGACAAGACTAGATGAGGATCAAGCATCAAATATGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0140053 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

165

Amino Acids

18.13

Weight (kDa)

8.66

Isoelectric Point (pI)

57.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20090 AT4G20090
fragaria_vesca	FvH4_3g13070 FvH4_3g13070 FvH4_3g13070 FvH4_3g13070
malus_domestica	MD10G1226600.v1.1
prunus_persica	Prupe.4G118800_v2.0.a1
pyrus_communis	pycom05g22130 pycom05g22140 pycom10g19050
rosa_chinensis	RchiOBHm_Chr5g0021261
rosa_laevigata	RLG00000032600
rosa_multiflora	Rmu_sc0003392.1_g000013 Rmu_sc0004847.1_g000003
rosa_roxburghii	Rroxscaffold_1G00057240
rosa_rugosa	Rorug05G0065600 Rorug05G0065700 Rorug05G0065800 Rorug05G0065900 Rorug05G0065900
rosa_samantha	Rh5AG154600 Rh5BG154400 Rh5CG168000 Rh5DG154700
rosa_wichuraiana	Rw5G013780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	33
AccII	CGCG	1 cut(s)	41
AciI	CCGC	9 cut(s)	15, 31, 36, 39, 41, 75, 96, 99, 283
AclWI	GGATC	1 cut(s)	483
AcoI	YGGCCR	3 cut(s)	42, 195, 436
AcuI	CTGAAG	1 cut(s)	282
AfaI	GTAC	1 cut(s)	313
AfiI	CCNNNNNNNGG	2 cut(s)	141, 252
AluBI	AGCT	1 cut(s)	162
AluI	AGCT	1 cut(s)	162
Alw21I	GWGCWC	2 cut(s)	292, 387
Alw26I	GTCTC	2 cut(s)	167, 238
AlwI	GGATC	1 cut(s)	483
AlwNI	CAGNNNCTG	1 cut(s)	206
Ama87I	CYCGRG	1 cut(s)	63
AoxI	GGCC	4 cut(s)	3, 42, 195, 436
ApeKI	GCWGC	3 cut(s)	77, 162, 165
AspS9I	GGNCC	2 cut(s)	21, 255
AsuHPI	GGTGA	3 cut(s)	100, 208, 418
AvaI	CYCGRG	1 cut(s)	63
AvaII	GGWCC	2 cut(s)	21, 255
BalI	TGGCCA	1 cut(s)	438
Bbv12I	GWGCWC	2 cut(s)	292, 387
BbvI	GCAGC	3 cut(s)	89, 149, 152
BccI	CCATC	2 cut(s)	119, 416
BceAI	ACGGC	1 cut(s)	210
BclI	TGATCA	1 cut(s)	360
BcoDI	GTCTC	2 cut(s)	167, 238
BfaI	CTAG	2 cut(s)	18, 467
BisI	GCNGC	8 cut(s)	15, 39, 42, 78, 99, 163, 166, 284
BlsI	GCNGC	8 cut(s)	16, 40, 43, 79, 100, 164, 167, 285
Bme18I	GGWCC	2 cut(s)	21, 255
BmeT110I	CYCGRG	1 cut(s)	63
BmgT120I	GGNCC	2 cut(s)	21, 255
BmiI	GGNNCC	1 cut(s)	257
BmsI	GCATC	2 cut(s)	213, 491
BsaBI	GATNNNNATC	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 252
Bse3DI	GCAATG	1 cut(s)	209
Bse8I	GATNNNNATC	1 cut(s)	474
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	111
BseJI	GATNNNNATC	1 cut(s)	474
BseLI	CCNNNNNNNGG	2 cut(s)	141, 252
BseMI	GCAATG	1 cut(s)	209
BseXI	GCAGC	3 cut(s)	89, 149, 152
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	4 cut(s)	5, 44, 197, 438
BsiHKAI	GWGCWC	2 cut(s)	292, 387
BsiHKCI	CYCGRG	1 cut(s)	63
BslI	CCNNNNNNNGG	2 cut(s)	141, 252
BsmAI	GTCTC	2 cut(s)	167, 238
BsmBI	CGTCTC	2 cut(s)	167, 238
BsnI	GGCC	4 cut(s)	5, 44, 197, 438
BsoBI	CYCGRG	1 cut(s)	63
Bsp1286I	GDGCHC	2 cut(s)	292, 387
Bsp1407I	TGTACA	1 cut(s)	311
Bsp143I	GATC	3 cut(s)	330, 360, 475
BspACI	CCGC	9 cut(s)	15, 31, 36, 39, 41, 75, 96, 99, 283
BspANI	GGCC	4 cut(s)	5, 44, 197, 438
BspFNI	CGCG	1 cut(s)	41
BspHI	TCATGA	1 cut(s)	357
BspLI	GGNNCC	1 cut(s)	257
BspPI	GGATC	1 cut(s)	483
BsrBI	CCGCTC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	209
BsrGI	TGTACA	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	3 cut(s)	330, 360, 475
Bst4CI	ACNGT	1 cut(s)	251
BstAUI	TGTACA	1 cut(s)	311
BstC8I	GCNNGC	1 cut(s)	288
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	111
BstFNI	CGCG	1 cut(s)	41
BstKTI	GATC	3 cut(s)	333, 363, 478
BstMAI	GTCTC	2 cut(s)	167, 238
BstMBI	GATC	3 cut(s)	330, 360, 475
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 77
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	3 cut(s)	89, 149, 152
BsuRI	GGCC	4 cut(s)	5, 44, 197, 438
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	288
CaiI	CAGNNNCTG	1 cut(s)	206
CciI	TCATGA	1 cut(s)	357
Cfr13I	GGNCC	2 cut(s)	21, 255
Cfr42I	CCGCGG	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	312
CviAII	CATG	2 cut(s)	25, 358
CviJI	RGCY	8 cut(s)	5, 44, 80, 162, 197, 203, 426, 438
CviKI_1	RGCY	8 cut(s)	5, 44, 80, 162, 197, 203, 426, 438
CviQI	GTAC	1 cut(s)	312
DpnI	GATC	3 cut(s)	332, 362, 477
DpnII	GATC	3 cut(s)	330, 360, 475
EaeI	YGGCCR	3 cut(s)	42, 195, 436
EciI	GGCGGA	2 cut(s)	25, 85
Eco47I	GGWCC	2 cut(s)	21, 255
Eco57I	CTGAAG	1 cut(s)	282
Eco88I	CYCGRG	1 cut(s)	63
Esp3I	CGTCTC	2 cut(s)	167, 238
FaeI	CATG	2 cut(s)	28, 361
FaiI	YATR	4 cut(s)	26, 359, 371, 491
FatI	CATG	2 cut(s)	24, 357
FbaI	TGATCA	1 cut(s)	360
Fnu4HI	GCNGC	8 cut(s)	15, 39, 42, 78, 99, 163, 166, 284
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	8 cut(s)	15, 39, 42, 78, 99, 163, 166, 284
FspBI	CTAG	2 cut(s)	18, 467
GluI	GCNGC	8 cut(s)	15, 39, 42, 78, 99, 163, 166, 284
HaeIII	GGCC	4 cut(s)	5, 44, 197, 438
Hin1II	CATG	2 cut(s)	28, 361
HinfI	GANTC	1 cut(s)	345
HphI	GGTGA	3 cut(s)	100, 208, 418
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188III	TCNNGA	2 cut(s)	358, 364
Hpy8I	GTNNAC	1 cut(s)	312
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	1 cut(s)	209
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 77
HpySE526I	ACGT	1 cut(s)	176
Hsp92II	CATG	2 cut(s)	28, 361
Ksp22I	TGATCA	1 cut(s)	360
KspI	CCGCGG	1 cut(s)	42
Kzo9I	GATC	3 cut(s)	330, 360, 475
LmnI	GCTCC	4 cut(s)	33, 38, 248, 390
LpnPI	CCDG	6 cut(s)	41, 58, 127, 162, 273, 412
Lsp1109I	GCAGC	3 cut(s)	89, 149, 152
LweI	GCATC	2 cut(s)	213, 491
MaeI	CTAG	2 cut(s)	18, 467
MaeII	ACGT	1 cut(s)	176
MalI	GATC	3 cut(s)	332, 362, 477
MbiI	CCGCTC	1 cut(s)	33
MboI	GATC	3 cut(s)	330, 360, 475
MhlI	GDGCHC	2 cut(s)	292, 387
MlsI	TGGCCA	1 cut(s)	438
MluNI	TGGCCA	1 cut(s)	438
MlyI	GAGTC	1 cut(s)	354
MmeI	TCCRAC	2 cut(s)	233, 322
MnlI	CCTC	7 cut(s)	16, 82, 103, 214, 229, 346, 466
Mox20I	TGGCCA	1 cut(s)	438
MscI	TGGCCA	1 cut(s)	438
MseI	TTAA	1 cut(s)	447
MslI	CAYNNNNRTG	1 cut(s)	221
Msp20I	TGGCCA	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	41
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	11, 77
NdeII	GATC	3 cut(s)	330, 360, 475
NlaIII	CATG	2 cut(s)	28, 361
NlaIV	GGNNCC	1 cut(s)	257
PagI	TCATGA	1 cut(s)	357
PkrI	GCNGC	8 cut(s)	16, 40, 43, 79, 100, 164, 167, 285
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
PspN4I	GGNNCC	1 cut(s)	257
PspPI	GGNCC	2 cut(s)	21, 255
PstNI	CAGNNNCTG	1 cut(s)	206
RsaI	GTAC	1 cut(s)	313
RsaNI	GTAC	1 cut(s)	312
RseI	CAYNNNNRTG	1 cut(s)	221
SacII	CCGCGG	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	8 cut(s)	15, 39, 42, 78, 99, 163, 166, 284
Sau3AI	GATC	3 cut(s)	330, 360, 475
Sau96I	GGNCC	2 cut(s)	21, 255
SchI	GAGTC	1 cut(s)	354
SduI	GDGCHC	2 cut(s)	292, 387
SetI	ASST	6 cut(s)	23, 146, 164, 179, 221, 357
SfaNI	GCATC	2 cut(s)	213, 491
Sfr303I	CCGCGG	1 cut(s)	42
SgrBI	CCGCGG	1 cut(s)	42
SinI	GGWCC	2 cut(s)	21, 255
SmiMI	CAYNNNNRTG	1 cut(s)	221
SsiI	CCGC	9 cut(s)	15, 31, 36, 39, 41, 75, 96, 99, 283
SspMI	CTAG	2 cut(s)	18, 467
TaaI	ACNGT	1 cut(s)	251
TaiI	ACGT	1 cut(s)	179
TaqI	TCGA	2 cut(s)	221, 348
TatI	WGTACW	1 cut(s)	311
TauI	GCSGC	5 cut(s)	17, 41, 44, 101, 286
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TseI	GCWGC	3 cut(s)	77, 162, 165
TspDTI	ATGAA	1 cut(s)	262
TspGWI	ACGGA	1 cut(s)	220
VpaK11BI	GGWCC	2 cut(s)	21, 255
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XspI	CTAG	2 cut(s)	18, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.